data_6Z8C # _model_server_result.job_id '_KV2y2UZ8xiKRWJbRzgapQ' _model_server_result.datetime_utc '2024-11-08 20:50:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6z8c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":307}' # _entry.id 6Z8C # _exptl.entry_id 6Z8C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 357.488 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[4-[(~{Z})-1,2-diphenylbut-1-enyl]phenoxy]-~{N}-methyl-ethanamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Z8C _cell.length_a 109.221 _cell.length_b 109.221 _cell.length_c 211.161 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Z8C _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N # _chem_comp.formula 'C25 H27 N O' _chem_comp.formula_weight 357.488 _chem_comp.id QBN _chem_comp.mon_nstd_flag . _chem_comp.name 2-[4-[(~{Z})-1,2-diphenylbut-1-enyl]phenoxy]-~{N}-methyl-ethanamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C18 QBN sing 425 n n C17 O1 QBN sing 426 n n C18 N1 QBN sing 427 n n C13 C12 QBN doub 428 n y C13 C14 QBN sing 429 n y O1 C14 QBN sing 430 n n C12 C11 QBN sing 431 n y C14 C15 QBN doub 432 n y N1 C19 QBN sing 433 n n C10 C9 QBN doub 434 n y C10 C5 QBN sing 435 n y C24 C25 QBN doub 436 n y C24 C23 QBN sing 437 n y C11 C4 QBN sing 438 n n C11 C16 QBN doub 439 n y C9 C8 QBN sing 440 n y C25 C20 QBN sing 441 n y C15 C16 QBN sing 442 n y C23 C22 QBN doub 443 n y C4 C5 QBN sing 444 n n C4 C3 QBN doub 445 z n C5 C6 QBN doub 446 n y C20 C3 QBN sing 447 n n C20 C21 QBN doub 448 n y C3 C2 QBN sing 449 n n C8 C7 QBN doub 450 n y C22 C21 QBN sing 451 n y C2 C1 QBN sing 452 n n C6 C7 QBN sing 453 n y N1 H1 QBN sing 454 n n C6 H3 QBN sing 455 n n C7 H4 QBN sing 456 n n C8 H5 QBN sing 457 n n C10 H6 QBN sing 458 n n C13 H7 QBN sing 459 n n C15 H8 QBN sing 460 n n C17 H9 QBN sing 461 n n C17 H10 QBN sing 462 n n C21 H11 QBN sing 463 n n C22 H12 QBN sing 464 n n C24 H13 QBN sing 465 n n C1 H14 QBN sing 466 n n C1 H15 QBN sing 467 n n C1 H16 QBN sing 468 n n C2 H17 QBN sing 469 n n C2 H18 QBN sing 470 n n C9 H19 QBN sing 471 n n C12 H20 QBN sing 472 n n C16 H21 QBN sing 473 n n C18 H22 QBN sing 474 n n C18 H23 QBN sing 475 n n C19 H24 QBN sing 476 n n C19 H25 QBN sing 477 n n C19 H26 QBN sing 478 n n C23 H27 QBN sing 479 n n C25 H28 QBN sing 480 n n # _atom_sites.entry_id 6Z8C _atom_sites.fract_transf_matrix[1][1] 0.009156 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009156 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004736 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 301 301 NA NA . C 2 NA A 1 302 302 NA NA . D 2 NA A 1 303 303 NA NA . E 3 2CV A 1 304 501 2CV 2CV . F 4 12P A 1 305 1001 12P 12P . G 3 2CV A 1 306 1201 2CV 2CV . H 5 QBN A 1 307 1301 QBN LIG . I 5 QBN A 1 308 1501 QBN LIG . J 6 HOH A 1 401 35 HOH HOH . J 6 HOH A 2 402 29 HOH HOH . J 6 HOH A 3 403 28 HOH HOH . J 6 HOH A 4 404 3 HOH HOH . J 6 HOH A 5 405 32 HOH HOH . J 6 HOH A 6 406 54 HOH HOH . J 6 HOH A 7 407 24 HOH HOH . J 6 HOH A 8 408 10 HOH HOH . J 6 HOH A 9 409 11 HOH HOH . J 6 HOH A 10 410 57 HOH HOH . J 6 HOH A 11 411 16 HOH HOH . J 6 HOH A 12 412 22 HOH HOH . J 6 HOH A 13 413 58 HOH HOH . J 6 HOH A 14 414 52 HOH HOH . J 6 HOH A 15 415 14 HOH HOH . J 6 HOH A 16 416 5 HOH HOH . J 6 HOH A 17 417 12 HOH HOH . J 6 HOH A 18 418 17 HOH HOH . J 6 HOH A 19 419 7 HOH HOH . J 6 HOH A 20 420 39 HOH HOH . J 6 HOH A 21 421 47 HOH HOH . J 6 HOH A 22 422 50 HOH HOH . J 6 HOH A 23 423 37 HOH HOH . J 6 HOH A 24 424 18 HOH HOH . J 6 HOH A 25 425 53 HOH HOH . J 6 HOH A 26 426 26 HOH HOH . J 6 HOH A 27 427 21 HOH HOH . J 6 HOH A 28 428 4 HOH HOH . J 6 HOH A 29 429 60 HOH HOH . J 6 HOH A 30 430 8 HOH HOH . J 6 HOH A 31 431 46 HOH HOH . J 6 HOH A 32 432 25 HOH HOH . J 6 HOH A 33 433 49 HOH HOH . J 6 HOH A 34 434 27 HOH HOH . J 6 HOH A 35 435 6 HOH HOH . J 6 HOH A 36 436 38 HOH HOH . J 6 HOH A 37 437 15 HOH HOH . J 6 HOH A 38 438 55 HOH HOH . J 6 HOH A 39 439 34 HOH HOH . J 6 HOH A 40 440 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 QBN . . . H 5 16.784 -7.314 44.647 1 168.46 ? N1 QBN 307 A 1 HETATM 2 C C4 QBN . . . H 5 13.906 -1.303 46.09 1 170.03 ? C4 QBN 307 A 1 HETATM 3 C C5 QBN . . . H 5 12.508 -0.808 46.242 1 170.29 ? C5 QBN 307 A 1 HETATM 4 C C6 QBN . . . H 5 11.651 -1.356 47.198 1 170.47 ? C6 QBN 307 A 1 HETATM 5 C C7 QBN . . . H 5 10.354 -0.894 47.335 1 170.42 ? C7 QBN 307 A 1 HETATM 6 C C8 QBN . . . H 5 9.89 0.118 46.526 1 170.45 ? C8 QBN 307 A 1 HETATM 7 C C10 QBN . . . H 5 12.016 0.217 45.432 1 170.4 ? C10 QBN 307 A 1 HETATM 8 C C13 QBN . . . H 5 14.383 -4.02 43.494 1 168.96 ? C13 QBN 307 A 1 HETATM 9 C C15 QBN . . . H 5 14.131 -5.059 45.644 1 168.94 ? C15 QBN 307 A 1 HETATM 10 C C17 QBN . . . H 5 15.47 -6.568 42.699 1 168.64 ? C17 QBN 307 A 1 HETATM 11 C C20 QBN . . . H 5 16.382 -1.048 46.338 1 169.95 ? C20 QBN 307 A 1 HETATM 12 C C21 QBN . . . H 5 16.817 -2.225 46.935 1 169.96 ? C21 QBN 307 A 1 HETATM 13 C C22 QBN . . . H 5 18.124 -2.656 46.79 1 169.94 ? C22 QBN 307 A 1 HETATM 14 C C24 QBN . . . H 5 18.606 -0.75 45.448 1 169.89 ? C24 QBN 307 A 1 HETATM 15 C C1 QBN . . . H 5 15.74 0.984 48.339 1 169.95 ? C1 QBN 307 A 1 HETATM 16 C C2 QBN . . . H 5 14.816 0.778 47.142 1 169.99 ? C2 QBN 307 A 1 HETATM 17 C C3 QBN . . . H 5 14.969 -0.581 46.493 1 170 ? C3 QBN 307 A 1 HETATM 18 C C9 QBN . . . H 5 10.717 0.673 45.576 1 170.4 ? C9 QBN 307 A 1 HETATM 19 C C11 QBN . . . H 5 14.052 -2.646 45.459 1 169.48 ? C11 QBN 307 A 1 HETATM 20 C C12 QBN . . . H 5 14.247 -2.779 44.084 1 169.23 ? C12 QBN 307 A 1 HETATM 21 C C14 QBN . . . H 5 14.325 -5.164 44.276 1 168.9 ? C14 QBN 307 A 1 HETATM 22 C C16 QBN . . . H 5 13.997 -3.812 46.224 1 169.27 ? C16 QBN 307 A 1 HETATM 23 O O1 QBN . . . H 5 14.459 -6.397 43.695 1 168.75 ? O1 QBN 307 A 1 HETATM 24 C C18 QBN . . . H 5 16.814 -6.575 43.385 1 168.5 ? C18 QBN 307 A 1 HETATM 25 C C19 QBN . . . H 5 17.78 -6.826 45.612 1 168.43 ? C19 QBN 307 A 1 HETATM 26 C C23 QBN . . . H 5 19.017 -1.918 46.048 1 169.93 ? C23 QBN 307 A 1 HETATM 27 C C25 QBN . . . H 5 17.299 -0.317 45.591 1 169.92 ? C25 QBN 307 A 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #