data_6Z9U # _model_server_result.job_id P9l9cIZfF01b-eJ4eUAQXg _model_server_result.datetime_utc '2024-11-09 02:30:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6z9u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 6Z9U # _exptl.entry_id 6Z9U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.308 _cell.angle_gamma 90 _cell.entry_id 6Z9U _cell.length_a 34.848 _cell.length_b 69.277 _cell.length_c 94.79 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Z9U _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6Z9U _atom_sites.fract_transf_matrix[1][1] 0.028696 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00419 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014435 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010662 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL D 1 201 1 GOL GOL . F 3 GOL D 1 202 2 GOL GOL . G 4 HOH A 1 401 90 HOH HOH . G 4 HOH A 2 402 75 HOH HOH . G 4 HOH A 3 403 87 HOH HOH . G 4 HOH A 4 404 69 HOH HOH . G 4 HOH A 5 405 55 HOH HOH . G 4 HOH A 6 406 34 HOH HOH . G 4 HOH A 7 407 91 HOH HOH . G 4 HOH A 8 408 9 HOH HOH . G 4 HOH A 9 409 35 HOH HOH . G 4 HOH A 10 410 14 HOH HOH . G 4 HOH A 11 411 1 HOH HOH . G 4 HOH A 12 412 44 HOH HOH . G 4 HOH A 13 413 3 HOH HOH . G 4 HOH A 14 414 16 HOH HOH . G 4 HOH A 15 415 33 HOH HOH . G 4 HOH A 16 416 32 HOH HOH . G 4 HOH A 17 417 25 HOH HOH . G 4 HOH A 18 418 93 HOH HOH . G 4 HOH A 19 419 24 HOH HOH . G 4 HOH A 20 420 83 HOH HOH . G 4 HOH A 21 421 48 HOH HOH . G 4 HOH A 22 422 95 HOH HOH . G 4 HOH A 23 423 64 HOH HOH . G 4 HOH A 24 424 82 HOH HOH . G 4 HOH A 25 425 38 HOH HOH . G 4 HOH A 26 426 85 HOH HOH . H 4 HOH B 1 201 54 HOH HOH . H 4 HOH B 2 202 13 HOH HOH . H 4 HOH B 3 203 65 HOH HOH . H 4 HOH B 4 204 19 HOH HOH . H 4 HOH B 5 205 53 HOH HOH . H 4 HOH B 6 206 98 HOH HOH . H 4 HOH B 7 207 50 HOH HOH . H 4 HOH B 8 208 99 HOH HOH . H 4 HOH B 9 209 59 HOH HOH . H 4 HOH B 10 210 72 HOH HOH . H 4 HOH B 11 211 71 HOH HOH . H 4 HOH B 12 212 31 HOH HOH . H 4 HOH B 13 213 101 HOH HOH . H 4 HOH B 14 214 52 HOH HOH . H 4 HOH B 15 215 51 HOH HOH . H 4 HOH B 16 216 73 HOH HOH . H 4 HOH B 17 217 105 HOH HOH . H 4 HOH B 18 218 89 HOH HOH . H 4 HOH B 19 219 61 HOH HOH . H 4 HOH B 20 220 100 HOH HOH . H 4 HOH B 21 221 86 HOH HOH . H 4 HOH B 22 222 104 HOH HOH . H 4 HOH B 23 223 102 HOH HOH . H 4 HOH B 24 224 103 HOH HOH . I 4 HOH C 1 401 6 HOH HOH . I 4 HOH C 2 402 27 HOH HOH . I 4 HOH C 3 403 12 HOH HOH . I 4 HOH C 4 404 68 HOH HOH . I 4 HOH C 5 405 2 HOH HOH . I 4 HOH C 6 406 45 HOH HOH . I 4 HOH C 7 407 5 HOH HOH . I 4 HOH C 8 408 22 HOH HOH . I 4 HOH C 9 409 56 HOH HOH . I 4 HOH C 10 410 49 HOH HOH . I 4 HOH C 11 411 15 HOH HOH . I 4 HOH C 12 412 94 HOH HOH . I 4 HOH C 13 413 80 HOH HOH . I 4 HOH C 14 414 76 HOH HOH . I 4 HOH C 15 415 92 HOH HOH . I 4 HOH C 16 416 42 HOH HOH . I 4 HOH C 17 417 70 HOH HOH . I 4 HOH C 18 418 81 HOH HOH . I 4 HOH C 19 419 79 HOH HOH . J 4 HOH D 1 301 63 HOH HOH . J 4 HOH D 2 302 57 HOH HOH . J 4 HOH D 3 303 18 HOH HOH . J 4 HOH D 4 304 29 HOH HOH . J 4 HOH D 5 305 110 HOH HOH . J 4 HOH D 6 306 10 HOH HOH . J 4 HOH D 7 307 8 HOH HOH . J 4 HOH D 8 308 97 HOH HOH . J 4 HOH D 9 309 47 HOH HOH . J 4 HOH D 10 310 17 HOH HOH . J 4 HOH D 11 311 67 HOH HOH . J 4 HOH D 12 312 74 HOH HOH . J 4 HOH D 13 313 36 HOH HOH . J 4 HOH D 14 314 23 HOH HOH . J 4 HOH D 15 315 20 HOH HOH . J 4 HOH D 16 316 39 HOH HOH . J 4 HOH D 17 317 28 HOH HOH . J 4 HOH D 18 318 58 HOH HOH . J 4 HOH D 19 319 7 HOH HOH . J 4 HOH D 20 320 26 HOH HOH . J 4 HOH D 21 321 66 HOH HOH . J 4 HOH D 22 322 62 HOH HOH . J 4 HOH D 23 323 60 HOH HOH . J 4 HOH D 24 324 30 HOH HOH . J 4 HOH D 25 325 40 HOH HOH . J 4 HOH D 26 326 37 HOH HOH . J 4 HOH D 27 327 21 HOH HOH . J 4 HOH D 28 328 43 HOH HOH . J 4 HOH D 29 329 11 HOH HOH . J 4 HOH D 30 330 41 HOH HOH . J 4 HOH D 31 331 109 HOH HOH . J 4 HOH D 32 332 46 HOH HOH . J 4 HOH D 33 333 96 HOH HOH . J 4 HOH D 34 334 78 HOH HOH . J 4 HOH D 35 335 88 HOH HOH . J 4 HOH D 36 336 108 HOH HOH . J 4 HOH D 37 337 77 HOH HOH . J 4 HOH D 38 338 106 HOH HOH . J 4 HOH D 39 339 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 -26.067 -12.366 -21.866 1 68.12 ? C1 GOL 201 D 1 HETATM 2 O O1 GOL . . . E 3 -25.924 -11.01 -22.226 1 72.76 ? O1 GOL 201 D 1 HETATM 3 C C2 GOL . . . E 3 -26.488 -12.462 -20.409 1 64.71 ? C2 GOL 201 D 1 HETATM 4 O O2 GOL . . . E 3 -27.885 -12.259 -20.285 1 73.83 ? O2 GOL 201 D 1 HETATM 5 C C3 GOL . . . E 3 -26.095 -13.836 -19.875 1 50.23 ? C3 GOL 201 D 1 HETATM 6 O O3 GOL . . . E 3 -25.368 -13.672 -18.671 1 42.47 ? O3 GOL 201 D 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #