data_6ZAB # _model_server_result.job_id zLJuvQ6C0p4tIlOv5g6brA _model_server_result.datetime_utc '2024-10-20 07:47:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zab # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 6ZAB # _exptl.entry_id 6ZAB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZAB _cell.length_a 179.18 _cell.length_b 179.18 _cell.length_c 96.74 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZAB _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -89.59 155.174432 -32.246667 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 137 A ASN 137 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc2 A NE2 HIS 141 A HIS 141 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc3 A NE2 HIS 192 A HIS 192 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc4 A NE2 HIS 214 A HIS 214 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc5 C ZN ZN . A ZN 501 1_555 D O7 CIT . A CIT 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? hydrog HOOGSTEEN hydrog1 B N6 DA 1 B DA 1 1_555 B O4 DT 10 B DT 10 12_564 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog HOOGSTEEN hydrog2 B N7 DA 1 B DA 1 1_555 B N3 DT 10 B DT 10 12_564 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N3 DT 2 B DT 2 1_555 B N1 DA 9 B DA 9 12_564 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B O4 DT 2 B DT 2 1_555 B N6 DA 9 B DA 9 12_564 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N1 DG 3 B DG 3 1_555 B N3 DC 8 B DC 8 12_564 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N2 DG 3 B DG 3 1_555 B O2 DC 8 B DC 8 12_564 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B O6 DG 3 B DG 3 1_555 B N4 DC 8 B DC 8 12_564 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N3 DT 4 B DT 4 1_555 B N1 DA 7 B DA 7 12_564 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O4 DT 4 B DT 4 1_555 B N6 DA 7 B DA 7 12_564 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N1 DA 5 B DA 5 1_555 B N3 DT 6 B DT 6 12_564 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N6 DA 5 B DA 5 1_555 B O4 DT 6 B DT 6 12_564 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N3 DT 6 B DT 6 1_555 B N1 DA 5 B DA 5 12_564 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O4 DT 6 B DT 6 1_555 B N6 DA 5 B DA 5 12_564 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N1 DA 7 B DA 7 1_555 B N3 DT 4 B DT 4 12_564 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N6 DA 7 B DA 7 1_555 B O4 DT 4 B DT 4 12_564 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N3 DC 8 B DC 8 1_555 B N1 DG 3 B DG 3 12_564 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N4 DC 8 B DC 8 1_555 B O6 DG 3 B DG 3 12_564 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B O2 DC 8 B DC 8 1_555 B N2 DG 3 B DG 3 12_564 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N1 DA 9 B DA 9 1_555 B N3 DT 2 B DT 2 12_564 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N6 DA 9 B DA 9 1_555 B O4 DT 2 B DT 2 12_564 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog HOOGSTEEN hydrog21 B N3 DT 10 B DT 10 1_555 B N7 DA 1 B DA 1 12_564 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog HOOGSTEEN hydrog22 B O4 DT 10 B DT 10 1_555 B N6 DA 1 B DA 1 12_564 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 6ZAB _atom_sites.fract_transf_matrix[1][1] 0.005581 _atom_sites.fract_transf_matrix[1][2] 0.003222 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006444 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010337 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 501 501 ZN ZN . D 4 CIT A 1 502 502 CIT CIT . E 5 PEG A 1 503 1 PEG PEG . F 6 EDO A 1 504 1 EDO EDO . G 7 HOH A 1 601 12 HOH HOH . G 7 HOH A 2 602 44 HOH HOH . G 7 HOH A 3 603 23 HOH HOH . G 7 HOH A 4 604 32 HOH HOH . G 7 HOH A 5 605 6 HOH HOH . G 7 HOH A 6 606 36 HOH HOH . G 7 HOH A 7 607 35 HOH HOH . G 7 HOH A 8 608 13 HOH HOH . G 7 HOH A 9 609 40 HOH HOH . G 7 HOH A 10 610 21 HOH HOH . G 7 HOH A 11 611 41 HOH HOH . G 7 HOH A 12 612 16 HOH HOH . G 7 HOH A 13 613 43 HOH HOH . G 7 HOH A 14 614 42 HOH HOH . G 7 HOH A 15 615 37 HOH HOH . G 7 HOH A 16 616 31 HOH HOH . G 7 HOH A 17 617 22 HOH HOH . G 7 HOH A 18 618 27 HOH HOH . H 7 HOH B 1 101 14 HOH HOH . H 7 HOH B 2 102 18 HOH HOH . H 7 HOH B 3 103 9 HOH HOH . H 7 HOH B 4 104 45 HOH HOH . H 7 HOH B 5 105 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . D 4 -26.687 69.841 -15.618 1 125.54 ? C1 CIT 502 A 1 HETATM 2 O O1 CIT . . . D 4 -26.733 70.613 -16.67 1 125.29 ? O1 CIT 502 A 1 HETATM 3 O O2 CIT . . . D 4 -26.781 70.254 -14.485 1 124.96 ? O2 CIT 502 A 1 HETATM 4 C C2 CIT . . . D 4 -26.536 68.38 -15.942 1 126.87 ? C2 CIT 502 A 1 HETATM 5 C C3 CIT . . . D 4 -25.232 67.943 -16.63 1 127.35 ? C3 CIT 502 A 1 HETATM 6 O O7 CIT . . . D 4 -24.992 68.811 -17.737 1 125.44 ? O7 CIT 502 A 1 HETATM 7 C C4 CIT . . . D 4 -24.001 68.065 -15.714 1 129.19 ? C4 CIT 502 A 1 HETATM 8 C C5 CIT . . . D 4 -24.034 67.406 -14.359 1 131.93 ? C5 CIT 502 A 1 HETATM 9 O O3 CIT . . . D 4 -23.695 66.147 -14.383 1 134.03 ? O3 CIT 502 A 1 HETATM 10 O O4 CIT . . . D 4 -24.322 67.997 -13.341 1 132.57 ? O4 CIT 502 A 1 HETATM 11 C C6 CIT . . . D 4 -25.392 66.518 -17.16 1 128.51 ? C6 CIT 502 A 1 HETATM 12 O O5 CIT . . . D 4 -25.3 66.24 -18.339 1 128.56 ? O5 CIT 502 A 1 HETATM 13 O O6 CIT . . . D 4 -25.644 65.638 -16.22 1 129.67 ? O6 CIT 502 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 367 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #