data_6ZAQ # _model_server_result.job_id lJ6GFftD3z3B46u01YkVmg _model_server_result.datetime_utc '2024-11-25 03:45:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zaq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 6ZAQ # _exptl.entry_id 6ZAQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 359.398 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ISOPENICILLIN N' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZAQ _cell.length_a 41.991 _cell.length_b 75.552 _cell.length_c 102.348 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZAQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 214 A HIS 214 1_555 B FE FE2 . A FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc2 A OD1 ASP 216 A ASP 216 1_555 B FE FE2 . A FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc3 A NE2 HIS 270 A HIS 270 1_555 B FE FE2 . A FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc4 B FE FE2 . A FE2 401 1_555 E O HOH . A HOH 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? # _chem_comp.formula 'C14 H21 N3 O6 S' _chem_comp.formula_weight 359.398 _chem_comp.id IP1 _chem_comp.mon_nstd_flag . _chem_comp.name 'ISOPENICILLIN N' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IP1 sing 173 n n C1 O19 IP1 sing 174 n n C1 O20 IP1 doub 175 n n C2 C3 IP1 sing 176 n n C2 N14 IP1 sing 177 n n C2 H2 IP1 sing 178 n n C3 C4 IP1 sing 179 n n C3 H32 IP1 sing 180 n n C3 H31 IP1 sing 181 n n C4 C7 IP1 sing 182 n n C4 H42A IP1 sing 183 n n C4 H41 IP1 sing 184 n n C7 C10 IP1 sing 185 n n C7 H72 IP1 sing 186 n n C7 H71 IP1 sing 187 n n C10 N11 IP1 sing 188 n n C10 O15 IP1 doub 189 n n N11 C12 IP1 sing 190 n n N11 H11 IP1 sing 191 n n C12 C13 IP1 sing 192 n n C12 C16 IP1 sing 193 n n C12 H12 IP1 sing 194 n n C13 O18 IP1 doub 195 n n C13 N29 IP1 sing 196 n n N14 H142 IP1 sing 197 n n N14 H141 IP1 sing 198 n n C16 S17 IP1 sing 199 n n C16 N29 IP1 sing 200 n n C16 H16 IP1 sing 201 n n S17 C32 IP1 sing 202 n n O19 H19 IP1 sing 203 n n N29 C30 IP1 sing 204 n n C30 C31 IP1 sing 205 n n C30 C32 IP1 sing 206 n n C30 H30 IP1 sing 207 n n C31 O42 IP1 sing 208 n n C31 O43 IP1 doub 209 n n C32 C33 IP1 sing 210 n n C32 C37 IP1 sing 211 n n C33 H333 IP1 sing 212 n n C33 H332 IP1 sing 213 n n C33 H331 IP1 sing 214 n n C37 H373 IP1 sing 215 n n C37 H372 IP1 sing 216 n n C37 H371 IP1 sing 217 n n O42 H42 IP1 sing 218 n n # _atom_sites.entry_id 6ZAQ _atom_sites.fract_transf_matrix[1][1] 0.023815 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013236 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009771 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE2 A 1 401 1 FE2 FE . C 3 SO4 A 1 402 1 SO4 SO4 . D 4 IP1 A 1 403 1 IP1 IP1 . E 5 HOH A 1 501 109 HOH HOH . E 5 HOH A 2 502 123 HOH HOH . E 5 HOH A 3 503 44 HOH HOH . E 5 HOH A 4 504 90 HOH HOH . E 5 HOH A 5 505 59 HOH HOH . E 5 HOH A 6 506 88 HOH HOH . E 5 HOH A 7 507 19 HOH HOH . E 5 HOH A 8 508 29 HOH HOH . E 5 HOH A 9 509 26 HOH HOH . E 5 HOH A 10 510 129 HOH HOH . E 5 HOH A 11 511 56 HOH HOH . E 5 HOH A 12 512 28 HOH HOH . E 5 HOH A 13 513 1 HOH HOH . E 5 HOH A 14 514 50 HOH HOH . E 5 HOH A 15 515 82 HOH HOH . E 5 HOH A 16 516 18 HOH HOH . E 5 HOH A 17 517 117 HOH HOH . E 5 HOH A 18 518 43 HOH HOH . E 5 HOH A 19 519 68 HOH HOH . E 5 HOH A 20 520 37 HOH HOH . E 5 HOH A 21 521 103 HOH HOH . E 5 HOH A 22 522 122 HOH HOH . E 5 HOH A 23 523 36 HOH HOH . E 5 HOH A 24 524 74 HOH HOH . E 5 HOH A 25 525 12 HOH HOH . E 5 HOH A 26 526 52 HOH HOH . E 5 HOH A 27 527 8 HOH HOH . E 5 HOH A 28 528 27 HOH HOH . E 5 HOH A 29 529 120 HOH HOH . E 5 HOH A 30 530 114 HOH HOH . E 5 HOH A 31 531 16 HOH HOH . E 5 HOH A 32 532 5 HOH HOH . E 5 HOH A 33 533 134 HOH HOH . E 5 HOH A 34 534 80 HOH HOH . E 5 HOH A 35 535 76 HOH HOH . E 5 HOH A 36 536 7 HOH HOH . E 5 HOH A 37 537 131 HOH HOH . E 5 HOH A 38 538 60 HOH HOH . E 5 HOH A 39 539 111 HOH HOH . E 5 HOH A 40 540 20 HOH HOH . E 5 HOH A 41 541 34 HOH HOH . E 5 HOH A 42 542 81 HOH HOH . E 5 HOH A 43 543 89 HOH HOH . E 5 HOH A 44 544 39 HOH HOH . E 5 HOH A 45 545 124 HOH HOH . E 5 HOH A 46 546 49 HOH HOH . E 5 HOH A 47 547 54 HOH HOH . E 5 HOH A 48 548 87 HOH HOH . E 5 HOH A 49 549 94 HOH HOH . E 5 HOH A 50 550 72 HOH HOH . E 5 HOH A 51 551 6 HOH HOH . E 5 HOH A 52 552 78 HOH HOH . E 5 HOH A 53 553 21 HOH HOH . E 5 HOH A 54 554 84 HOH HOH . E 5 HOH A 55 555 47 HOH HOH . E 5 HOH A 56 556 67 HOH HOH . E 5 HOH A 57 557 15 HOH HOH . E 5 HOH A 58 558 14 HOH HOH . E 5 HOH A 59 559 38 HOH HOH . E 5 HOH A 60 560 9 HOH HOH . E 5 HOH A 61 561 13 HOH HOH . E 5 HOH A 62 562 46 HOH HOH . E 5 HOH A 63 563 102 HOH HOH . E 5 HOH A 64 564 51 HOH HOH . E 5 HOH A 65 565 83 HOH HOH . E 5 HOH A 66 566 63 HOH HOH . E 5 HOH A 67 567 99 HOH HOH . E 5 HOH A 68 568 71 HOH HOH . E 5 HOH A 69 569 17 HOH HOH . E 5 HOH A 70 570 108 HOH HOH . E 5 HOH A 71 571 2 HOH HOH . E 5 HOH A 72 572 41 HOH HOH . E 5 HOH A 73 573 95 HOH HOH . E 5 HOH A 74 574 4 HOH HOH . E 5 HOH A 75 575 116 HOH HOH . E 5 HOH A 76 576 133 HOH HOH . E 5 HOH A 77 577 65 HOH HOH . E 5 HOH A 78 578 31 HOH HOH . E 5 HOH A 79 579 62 HOH HOH . E 5 HOH A 80 580 135 HOH HOH . E 5 HOH A 81 581 104 HOH HOH . E 5 HOH A 82 582 30 HOH HOH . E 5 HOH A 83 583 105 HOH HOH . E 5 HOH A 84 584 86 HOH HOH . E 5 HOH A 85 585 142 HOH HOH . E 5 HOH A 86 586 93 HOH HOH . E 5 HOH A 87 587 25 HOH HOH . E 5 HOH A 88 588 42 HOH HOH . E 5 HOH A 89 589 3 HOH HOH . E 5 HOH A 90 590 11 HOH HOH . E 5 HOH A 91 591 79 HOH HOH . E 5 HOH A 92 592 24 HOH HOH . E 5 HOH A 93 593 22 HOH HOH . E 5 HOH A 94 594 66 HOH HOH . E 5 HOH A 95 595 77 HOH HOH . E 5 HOH A 96 596 23 HOH HOH . E 5 HOH A 97 597 69 HOH HOH . E 5 HOH A 98 598 53 HOH HOH . E 5 HOH A 99 599 57 HOH HOH . E 5 HOH A 100 600 45 HOH HOH . E 5 HOH A 101 601 10 HOH HOH . E 5 HOH A 102 602 92 HOH HOH . E 5 HOH A 103 603 64 HOH HOH . E 5 HOH A 104 604 126 HOH HOH . E 5 HOH A 105 605 101 HOH HOH . E 5 HOH A 106 606 97 HOH HOH . E 5 HOH A 107 607 32 HOH HOH . E 5 HOH A 108 608 100 HOH HOH . E 5 HOH A 109 609 70 HOH HOH . E 5 HOH A 110 610 91 HOH HOH . E 5 HOH A 111 611 35 HOH HOH . E 5 HOH A 112 612 110 HOH HOH . E 5 HOH A 113 613 40 HOH HOH . E 5 HOH A 114 614 33 HOH HOH . E 5 HOH A 115 615 61 HOH HOH . E 5 HOH A 116 616 48 HOH HOH . E 5 HOH A 117 617 125 HOH HOH . E 5 HOH A 118 618 96 HOH HOH . E 5 HOH A 119 619 132 HOH HOH . E 5 HOH A 120 620 55 HOH HOH . E 5 HOH A 121 621 118 HOH HOH . E 5 HOH A 122 622 98 HOH HOH . E 5 HOH A 123 623 75 HOH HOH . E 5 HOH A 124 624 106 HOH HOH . E 5 HOH A 125 625 127 HOH HOH . E 5 HOH A 126 626 112 HOH HOH . E 5 HOH A 127 627 121 HOH HOH . E 5 HOH A 128 628 107 HOH HOH . E 5 HOH A 129 629 119 HOH HOH . E 5 HOH A 130 630 113 HOH HOH . E 5 HOH A 131 631 139 HOH HOH . E 5 HOH A 132 632 128 HOH HOH . E 5 HOH A 133 633 136 HOH HOH . E 5 HOH A 134 634 137 HOH HOH . E 5 HOH A 135 635 130 HOH HOH . E 5 HOH A 136 636 138 HOH HOH . E 5 HOH A 137 637 140 HOH HOH . E 5 HOH A 138 638 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IP1 . . . D 4 14.942 3.66 -8.536 1 40.51 ? C1 IP1 403 A 1 HETATM 2 C C2 IP1 . . . D 4 14.053 2.532 -9.041 1 40.2 ? C2 IP1 403 A 1 HETATM 3 C C3 IP1 . . . D 4 14.447 1.238 -8.267 1 47.32 ? C3 IP1 403 A 1 HETATM 4 C C4 IP1 . . . D 4 13.719 -0.015 -8.722 1 57.36 ? C4 IP1 403 A 1 HETATM 5 C C7 IP1 . . . D 4 14.211 -1.28 -8.037 1 68.62 ? C7 IP1 403 A 1 HETATM 6 C C10 IP1 . . . D 4 13.649 -2.538 -8.658 1 78.79 ? C10 IP1 403 A 1 HETATM 7 N N11 IP1 . . . D 4 12.858 -3.268 -7.868 1 81.84 ? N11 IP1 403 A 1 HETATM 8 C C12 IP1 . . . D 4 12.138 -4.413 -8.382 1 80.12 ? C12 IP1 403 A 1 HETATM 9 C C13 IP1 . . . D 4 10.75 -4.133 -8.98 1 80.97 ? C13 IP1 403 A 1 HETATM 10 N N14 IP1 . . . D 4 14.105 2.446 -10.515 1 35.48 ? N14 IP1 403 A 1 HETATM 11 O O15 IP1 . . . D 4 13.902 -2.858 -9.817 1 82.89 ? O15 IP1 403 A 1 HETATM 12 C C16 IP1 . . . D 4 11.344 -5.317 -7.365 1 77.04 ? C16 IP1 403 A 1 HETATM 13 S S17 IP1 . . . D 4 10.849 -4.658 -5.765 1 62.41 ? S17 IP1 403 A 1 HETATM 14 O O18 IP1 . . . D 4 10.3 -3.359 -9.806 1 86.5 ? O18 IP1 403 A 1 HETATM 15 O O19 IP1 . . . D 4 14.735 3.871 -7.272 1 40.86 ? O19 IP1 403 A 1 HETATM 16 O O20 IP1 . . . D 4 15.738 4.274 -9.222 1 38.03 ? O20 IP1 403 A 1 HETATM 17 N N29 IP1 . . . D 4 10.164 -5.119 -8.224 1 75.72 ? N29 IP1 403 A 1 HETATM 18 C C30 IP1 . . . D 4 8.871 -5.126 -7.53 1 60.63 ? C30 IP1 403 A 1 HETATM 19 C C31 IP1 . . . D 4 7.886 -6.099 -8.167 1 47.25 ? C31 IP1 403 A 1 HETATM 20 C C32 IP1 . . . D 4 9.172 -5.422 -6.018 1 58.56 ? C32 IP1 403 A 1 HETATM 21 C C33 IP1 . . . D 4 9.228 -6.923 -5.721 1 50.88 ? C33 IP1 403 A 1 HETATM 22 C C37 IP1 . . . D 4 8.159 -4.744 -5.099 1 57.87 ? C37 IP1 403 A 1 HETATM 23 O O42 IP1 . . . D 4 6.726 -6.136 -7.544 1 39.53 ? O42 IP1 403 A 1 HETATM 24 O O43 IP1 . . . D 4 8.153 -6.753 -9.141 1 40.76 ? O43 IP1 403 A 1 HETATM 25 H H2 IP1 . . . D 4 13.022 2.778 -8.79 1 48.42 ? H2 IP1 403 A 1 HETATM 26 H H32 IP1 . . . D 4 14.261 1.402 -7.207 1 56.96 ? H32 IP1 403 A 1 HETATM 27 H H31 IP1 . . . D 4 15.523 1.085 -8.339 1 56.96 ? H31 IP1 403 A 1 HETATM 28 H H42A IP1 . . . D 4 13.817 -0.146 -9.799 1 69 ? H42A IP1 403 A 1 HETATM 29 H H41 IP1 . . . D 4 12.648 0.096 -8.559 1 69 ? H41 IP1 403 A 1 HETATM 30 H H72 IP1 . . . D 4 13.946 -1.248 -6.981 1 82.52 ? H72 IP1 403 A 1 HETATM 31 H H71 IP1 . . . D 4 15.299 -1.308 -8.058 1 82.52 ? H71 IP1 403 A 1 HETATM 32 H H11 IP1 . . . D 4 12.729 -3.052 -6.885 1 98.38 ? H11 IP1 403 A 1 HETATM 33 H H12 IP1 . . . D 4 12.776 -4.998 -9.043 1 96.31 ? H12 IP1 403 A 1 HETATM 34 H H142 IP1 . . . D 4 15.009 2.175 -10.889 1 42.76 ? H142 IP1 403 A 1 HETATM 35 H H141 IP1 . . . D 4 13.334 1.934 -10.931 1 42.76 ? H141 IP1 403 A 1 HETATM 36 H H16 IP1 . . . D 4 11.698 -6.342 -7.266 1 92.62 ? H16 IP1 403 A 1 HETATM 37 H H19 IP1 . . . D 4 15.308 4.605 -6.927 1 49.2 ? H19 IP1 403 A 1 HETATM 38 H H30 IP1 . . . D 4 8.434 -4.131 -7.598 1 72.93 ? H30 IP1 403 A 1 HETATM 39 H H333 IP1 . . . D 4 9.429 -7.114 -4.668 1 61.23 ? H333 IP1 403 A 1 HETATM 40 H H332 IP1 . . . D 4 8.281 -7.408 -5.956 1 61.23 ? H332 IP1 403 A 1 HETATM 41 H H331 IP1 . . . D 4 10 -7.434 -6.294 1 61.23 ? H331 IP1 403 A 1 HETATM 42 H H373 IP1 . . . D 4 8.36 -4.957 -4.05 1 69.62 ? H373 IP1 403 A 1 HETATM 43 H H372 IP1 . . . D 4 8.155 -3.661 -5.213 1 69.62 ? H372 IP1 403 A 1 HETATM 44 H H371 IP1 . . . D 4 7.147 -5.091 -5.306 1 69.62 ? H371 IP1 403 A 1 HETATM 45 H H42 IP1 . . . D 4 6.099 -6.775 -7.973 1 47.61 ? H42 IP1 403 A 1 # _model_server_stats.io_time_ms 116 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 45 #