data_6ZAY
#
_model_server_result.job_id            Lqgr_gLrBxV-2iswX_DFhw 
_model_server_result.datetime_utc      '2024-11-26 05:34:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zay 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":303}' 
#
_entry.id    6ZAY 
#
_exptl.entry_id    6ZAY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6ZAY 
_cell.length_a            57.01 
_cell.length_b            132.11 
_cell.length_c            154.37 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZAY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 O N N 
? 5 P N N 
? 5 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 21 A THR 47 1_555 J MG MG . A MG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? 
metalc ? metalc2 A OG1 THR 39 A THR 65 1_555 J MG MG . A MG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? 
metalc ? metalc3 J MG MG . A MG 306 1_555 K O1B GDP . A GDP 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? 
metalc ? metalc4 J MG MG . A MG 306 1_555 X O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? 
metalc ? metalc5 J MG MG . A MG 306 1_555 X O HOH . A HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? 
metalc ? metalc6 C OG1 THR 21 B THR 47 1_555 V MG MG . B MG 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? 
metalc ? metalc7 C O GLU 37 B GLU 63 1_555 V MG MG . B MG 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? 
metalc ? metalc8 C OG1 THR 39 B THR 65 1_555 V MG MG . B MG 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? 
metalc ? metalc9 V MG MG . B MG 310 1_555 W O1B GDP . B GDP 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.971 ? 
metalc ? metalc10 V MG MG . B MG 310 1_555 W O2A GDP . B GDP 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? 
metalc ? metalc11 V MG MG . B MG 310 1_555 Z O HOH . B HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6ZAY 
_atom_sites.fract_transf_matrix[1][1]    0.017541 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007569 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006478 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 PO4 A 1 301 7 PO4 PO4 . 
F 3 PO4 A 1 302 9 PO4 PO4 . 
G 4 PEG A 1 303 10 PEG PEG . 
H 4 PEG A 1 304 20 PEG PEG . 
I 5 EDO A 1 305 21 EDO EDO . 
J 6 MG A 1 306 1 MG MG . 
K 7 GDP A 1 307 3 GDP GDP . 
L 3 PO4 C 1 301 5 PO4 PO4 . 
M 3 PO4 B 1 301 6 PO4 PO4 . 
N 3 PO4 B 1 302 8 PO4 PO4 . 
O 5 EDO B 1 303 11 EDO EDO . 
P 5 EDO B 1 304 12 EDO EDO . 
Q 4 PEG B 1 305 13 PEG PEG . 
R 5 EDO B 1 306 16 EDO EDO . 
S 4 PEG B 1 307 17 PEG PEG . 
T 4 PEG B 1 308 18 PEG PEG . 
U 4 PEG B 1 309 19 PEG PEG . 
V 6 MG B 1 310 2 MG MG . 
W 7 GDP B 1 311 4 GDP GDP . 
X 8 HOH A 1 401 2 HOH HOH . 
X 8 HOH A 2 402 153 HOH HOH . 
X 8 HOH A 3 403 42 HOH HOH . 
X 8 HOH A 4 404 28 HOH HOH . 
X 8 HOH A 5 405 146 HOH HOH . 
X 8 HOH A 6 406 95 HOH HOH . 
X 8 HOH A 7 407 105 HOH HOH . 
X 8 HOH A 8 408 54 HOH HOH . 
X 8 HOH A 9 409 180 HOH HOH . 
X 8 HOH A 10 410 65 HOH HOH . 
X 8 HOH A 11 411 172 HOH HOH . 
X 8 HOH A 12 412 115 HOH HOH . 
X 8 HOH A 13 413 137 HOH HOH . 
X 8 HOH A 14 414 103 HOH HOH . 
X 8 HOH A 15 415 142 HOH HOH . 
X 8 HOH A 16 416 57 HOH HOH . 
X 8 HOH A 17 417 125 HOH HOH . 
X 8 HOH A 18 418 116 HOH HOH . 
X 8 HOH A 19 419 34 HOH HOH . 
X 8 HOH A 20 420 120 HOH HOH . 
X 8 HOH A 21 421 29 HOH HOH . 
X 8 HOH A 22 422 91 HOH HOH . 
X 8 HOH A 23 423 87 HOH HOH . 
X 8 HOH A 24 424 89 HOH HOH . 
X 8 HOH A 25 425 97 HOH HOH . 
X 8 HOH A 26 426 26 HOH HOH . 
X 8 HOH A 27 427 128 HOH HOH . 
X 8 HOH A 28 428 22 HOH HOH . 
X 8 HOH A 29 429 52 HOH HOH . 
X 8 HOH A 30 430 20 HOH HOH . 
X 8 HOH A 31 431 60 HOH HOH . 
X 8 HOH A 32 432 53 HOH HOH . 
X 8 HOH A 33 433 58 HOH HOH . 
X 8 HOH A 34 434 19 HOH HOH . 
X 8 HOH A 35 435 78 HOH HOH . 
X 8 HOH A 36 436 56 HOH HOH . 
X 8 HOH A 37 437 140 HOH HOH . 
X 8 HOH A 38 438 94 HOH HOH . 
X 8 HOH A 39 439 12 HOH HOH . 
X 8 HOH A 40 440 9 HOH HOH . 
X 8 HOH A 41 441 170 HOH HOH . 
X 8 HOH A 42 442 45 HOH HOH . 
X 8 HOH A 43 443 109 HOH HOH . 
X 8 HOH A 44 444 39 HOH HOH . 
X 8 HOH A 45 445 107 HOH HOH . 
X 8 HOH A 46 446 5 HOH HOH . 
X 8 HOH A 47 447 171 HOH HOH . 
X 8 HOH A 48 448 100 HOH HOH . 
X 8 HOH A 49 449 44 HOH HOH . 
X 8 HOH A 50 450 40 HOH HOH . 
X 8 HOH A 51 451 6 HOH HOH . 
X 8 HOH A 52 452 18 HOH HOH . 
X 8 HOH A 53 453 32 HOH HOH . 
X 8 HOH A 54 454 37 HOH HOH . 
X 8 HOH A 55 455 159 HOH HOH . 
X 8 HOH A 56 456 14 HOH HOH . 
X 8 HOH A 57 457 41 HOH HOH . 
X 8 HOH A 58 458 164 HOH HOH . 
X 8 HOH A 59 459 123 HOH HOH . 
X 8 HOH A 60 460 154 HOH HOH . 
X 8 HOH A 61 461 119 HOH HOH . 
X 8 HOH A 62 462 133 HOH HOH . 
X 8 HOH A 63 463 96 HOH HOH . 
X 8 HOH A 64 464 92 HOH HOH . 
X 8 HOH A 65 465 173 HOH HOH . 
X 8 HOH A 66 466 11 HOH HOH . 
X 8 HOH A 67 467 117 HOH HOH . 
X 8 HOH A 68 468 85 HOH HOH . 
X 8 HOH A 69 469 108 HOH HOH . 
X 8 HOH A 70 470 178 HOH HOH . 
X 8 HOH A 71 471 46 HOH HOH . 
X 8 HOH A 72 472 80 HOH HOH . 
X 8 HOH A 73 473 144 HOH HOH . 
X 8 HOH A 74 474 184 HOH HOH . 
X 8 HOH A 75 475 68 HOH HOH . 
X 8 HOH A 76 476 150 HOH HOH . 
X 8 HOH A 77 477 166 HOH HOH . 
X 8 HOH A 78 478 138 HOH HOH . 
X 8 HOH A 79 479 134 HOH HOH . 
X 8 HOH A 80 480 74 HOH HOH . 
X 8 HOH A 81 481 139 HOH HOH . 
X 8 HOH A 82 482 177 HOH HOH . 
X 8 HOH A 83 483 75 HOH HOH . 
Y 8 HOH C 1 401 147 HOH HOH . 
Y 8 HOH C 2 402 118 HOH HOH . 
Y 8 HOH C 3 403 132 HOH HOH . 
Y 8 HOH C 4 404 168 HOH HOH . 
Y 8 HOH C 5 405 99 HOH HOH . 
Y 8 HOH C 6 406 62 HOH HOH . 
Y 8 HOH C 7 407 4 HOH HOH . 
Y 8 HOH C 8 408 163 HOH HOH . 
Y 8 HOH C 9 409 181 HOH HOH . 
Y 8 HOH C 10 410 31 HOH HOH . 
Z 8 HOH B 1 401 72 HOH HOH . 
Z 8 HOH B 2 402 59 HOH HOH . 
Z 8 HOH B 3 403 114 HOH HOH . 
Z 8 HOH B 4 404 67 HOH HOH . 
Z 8 HOH B 5 405 113 HOH HOH . 
Z 8 HOH B 6 406 71 HOH HOH . 
Z 8 HOH B 7 407 69 HOH HOH . 
Z 8 HOH B 8 408 24 HOH HOH . 
Z 8 HOH B 9 409 8 HOH HOH . 
Z 8 HOH B 10 410 84 HOH HOH . 
Z 8 HOH B 11 411 131 HOH HOH . 
Z 8 HOH B 12 412 21 HOH HOH . 
Z 8 HOH B 13 413 151 HOH HOH . 
Z 8 HOH B 14 414 121 HOH HOH . 
Z 8 HOH B 15 415 66 HOH HOH . 
Z 8 HOH B 16 416 51 HOH HOH . 
Z 8 HOH B 17 417 157 HOH HOH . 
Z 8 HOH B 18 418 30 HOH HOH . 
Z 8 HOH B 19 419 63 HOH HOH . 
Z 8 HOH B 20 420 25 HOH HOH . 
Z 8 HOH B 21 421 174 HOH HOH . 
Z 8 HOH B 22 422 13 HOH HOH . 
Z 8 HOH B 23 423 90 HOH HOH . 
Z 8 HOH B 24 424 179 HOH HOH . 
Z 8 HOH B 25 425 110 HOH HOH . 
Z 8 HOH B 26 426 23 HOH HOH . 
Z 8 HOH B 27 427 49 HOH HOH . 
Z 8 HOH B 28 428 101 HOH HOH . 
Z 8 HOH B 29 429 38 HOH HOH . 
Z 8 HOH B 30 430 15 HOH HOH . 
Z 8 HOH B 31 431 130 HOH HOH . 
Z 8 HOH B 32 432 61 HOH HOH . 
Z 8 HOH B 33 433 135 HOH HOH . 
Z 8 HOH B 34 434 155 HOH HOH . 
Z 8 HOH B 35 435 48 HOH HOH . 
Z 8 HOH B 36 436 76 HOH HOH . 
Z 8 HOH B 37 437 70 HOH HOH . 
Z 8 HOH B 38 438 148 HOH HOH . 
Z 8 HOH B 39 439 17 HOH HOH . 
Z 8 HOH B 40 440 10 HOH HOH . 
Z 8 HOH B 41 441 7 HOH HOH . 
Z 8 HOH B 42 442 3 HOH HOH . 
Z 8 HOH B 43 443 88 HOH HOH . 
Z 8 HOH B 44 444 16 HOH HOH . 
Z 8 HOH B 45 445 82 HOH HOH . 
Z 8 HOH B 46 446 98 HOH HOH . 
Z 8 HOH B 47 447 111 HOH HOH . 
Z 8 HOH B 48 448 27 HOH HOH . 
Z 8 HOH B 49 449 79 HOH HOH . 
Z 8 HOH B 50 450 182 HOH HOH . 
Z 8 HOH B 51 451 93 HOH HOH . 
Z 8 HOH B 52 452 73 HOH HOH . 
Z 8 HOH B 53 453 33 HOH HOH . 
Z 8 HOH B 54 454 104 HOH HOH . 
Z 8 HOH B 55 455 112 HOH HOH . 
Z 8 HOH B 56 456 64 HOH HOH . 
Z 8 HOH B 57 457 106 HOH HOH . 
Z 8 HOH B 58 458 126 HOH HOH . 
Z 8 HOH B 59 459 35 HOH HOH . 
Z 8 HOH B 60 460 129 HOH HOH . 
Z 8 HOH B 61 461 83 HOH HOH . 
Z 8 HOH B 62 462 47 HOH HOH . 
Z 8 HOH B 63 463 156 HOH HOH . 
Z 8 HOH B 64 464 124 HOH HOH . 
Z 8 HOH B 65 465 169 HOH HOH . 
Z 8 HOH B 66 466 136 HOH HOH . 
Z 8 HOH B 67 467 160 HOH HOH . 
Z 8 HOH B 68 468 143 HOH HOH . 
Z 8 HOH B 69 469 77 HOH HOH . 
Z 8 HOH B 70 470 122 HOH HOH . 
Z 8 HOH B 71 471 141 HOH HOH . 
AA 8 HOH D 1 301 50 HOH HOH . 
AA 8 HOH D 2 302 86 HOH HOH . 
AA 8 HOH D 3 303 81 HOH HOH . 
AA 8 HOH D 4 304 43 HOH HOH . 
AA 8 HOH D 5 305 162 HOH HOH . 
AA 8 HOH D 6 306 1 HOH HOH . 
AA 8 HOH D 7 307 102 HOH HOH . 
AA 8 HOH D 8 308 149 HOH HOH . 
AA 8 HOH D 9 309 183 HOH HOH . 
AA 8 HOH D 10 310 175 HOH HOH . 
AA 8 HOH D 11 311 152 HOH HOH . 
AA 8 HOH D 12 312 158 HOH HOH . 
AA 8 HOH D 13 313 165 HOH HOH . 
AA 8 HOH D 14 314 176 HOH HOH . 
AA 8 HOH D 15 315 161 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . O 5 -28.193 0.273 -36.81 1 63.31 ? C1 EDO 303 B 1 
HETATM 2 O O1 EDO . . . O 5 -27.739 -0.621 -35.788 1 66.74 ? O1 EDO 303 B 1 
HETATM 3 C C2 EDO . . . O 5 -27.4 1.587 -36.798 1 53.14 ? C2 EDO 303 B 1 
HETATM 4 O O2 EDO . . . O 5 -27.901 2.38 -37.859 1 45.42 ? O2 EDO 303 B 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           358 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#