data_6ZB2 # _model_server_result.job_id jDnnCeUkQQ5Q1_2SU4sRUw _model_server_result.datetime_utc '2025-01-10 09:07:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zb2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 6ZB2 # _exptl.entry_id 6ZB2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 364.398 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}5-cyclopropyl-1-(1~{H}-indol-4-ylmethyl)-~{N}3-methyl-2-oxidanylidene-pyridine-3,5-dicarboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZB2 _cell.length_a 72.017 _cell.length_b 52.327 _cell.length_c 32.033 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZB2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H20 N4 O3' _chem_comp.formula_weight 364.398 _chem_comp.id QD5 _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}5-cyclopropyl-1-(1~{H}-indol-4-ylmethyl)-~{N}3-methyl-2-oxidanylidene-pyridine-3,5-dicarboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 N05 QD5 sing 302 n n O08 C07 QD5 doub 303 n n N05 C07 QD5 sing 304 n n C07 C09 QD5 sing 305 n n C09 C10 QD5 doub 306 n n C09 C34 QD5 sing 307 n n O35 C34 QD5 doub 308 n n C10 C12 QD5 sing 309 n n C34 N15 QD5 sing 310 n n C12 C36 QD5 sing 311 n n C12 C13 QD5 doub 312 n n N15 C13 QD5 sing 313 n n N15 C16 QD5 sing 314 n n N38 C36 QD5 sing 315 n n N38 C40 QD5 sing 316 n n C36 O37 QD5 doub 317 n n C42 C40 QD5 sing 318 n n C42 C45 QD5 sing 319 n n C40 C45 QD5 sing 320 n n C16 C19 QD5 sing 321 n n C20 C19 QD5 doub 322 n y C20 C22 QD5 sing 323 n y C19 C33 QD5 sing 324 n y C22 C24 QD5 doub 325 n y C33 C31 QD5 sing 326 n y C33 C26 QD5 doub 327 n y C31 C29 QD5 doub 328 n y C24 C26 QD5 sing 329 n y C26 N27 QD5 sing 330 n y C29 N27 QD5 sing 331 n y C10 H1 QD5 sing 332 n n C13 H2 QD5 sing 333 n n C20 H3 QD5 sing 334 n n C22 H4 QD5 sing 335 n n C24 H5 QD5 sing 336 n n C01 H6 QD5 sing 337 n n C01 H7 QD5 sing 338 n n C01 H8 QD5 sing 339 n n N05 H9 QD5 sing 340 n n C16 H10 QD5 sing 341 n n C16 H11 QD5 sing 342 n n N27 H12 QD5 sing 343 n n C29 H13 QD5 sing 344 n n C31 H14 QD5 sing 345 n n N38 H15 QD5 sing 346 n n C40 H16 QD5 sing 347 n n C42 H17 QD5 sing 348 n n C42 H18 QD5 sing 349 n n C45 H19 QD5 sing 350 n n C45 H20 QD5 sing 351 n n # _atom_sites.entry_id 6ZB2 _atom_sites.fract_transf_matrix[1][1] 0.013886 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019111 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031218 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO AAA 1 501 1 EDO EDO . C 2 EDO AAA 1 502 2 EDO EDO . D 2 EDO AAA 1 503 3 EDO EDO . E 3 QD5 AAA 1 504 1 QD5 LIG . F 4 PEG AAA 1 505 1 PEG PEG . G 5 HOH AAA 1 601 56 HOH HOH . G 5 HOH AAA 2 602 62 HOH HOH . G 5 HOH AAA 3 603 10 HOH HOH . G 5 HOH AAA 4 604 4 HOH HOH . G 5 HOH AAA 5 605 107 HOH HOH . G 5 HOH AAA 6 606 112 HOH HOH . G 5 HOH AAA 7 607 160 HOH HOH . G 5 HOH AAA 8 608 48 HOH HOH . G 5 HOH AAA 9 609 156 HOH HOH . G 5 HOH AAA 10 610 66 HOH HOH . G 5 HOH AAA 11 611 7 HOH HOH . G 5 HOH AAA 12 612 65 HOH HOH . G 5 HOH AAA 13 613 3 HOH HOH . G 5 HOH AAA 14 614 12 HOH HOH . G 5 HOH AAA 15 615 145 HOH HOH . G 5 HOH AAA 16 616 152 HOH HOH . G 5 HOH AAA 17 617 75 HOH HOH . G 5 HOH AAA 18 618 32 HOH HOH . G 5 HOH AAA 19 619 11 HOH HOH . G 5 HOH AAA 20 620 23 HOH HOH . G 5 HOH AAA 21 621 44 HOH HOH . G 5 HOH AAA 22 622 30 HOH HOH . G 5 HOH AAA 23 623 15 HOH HOH . G 5 HOH AAA 24 624 63 HOH HOH . G 5 HOH AAA 25 625 146 HOH HOH . G 5 HOH AAA 26 626 5 HOH HOH . G 5 HOH AAA 27 627 17 HOH HOH . G 5 HOH AAA 28 628 25 HOH HOH . G 5 HOH AAA 29 629 106 HOH HOH . G 5 HOH AAA 30 630 2 HOH HOH . G 5 HOH AAA 31 631 133 HOH HOH . G 5 HOH AAA 32 632 9 HOH HOH . G 5 HOH AAA 33 633 70 HOH HOH . G 5 HOH AAA 34 634 16 HOH HOH . G 5 HOH AAA 35 635 55 HOH HOH . G 5 HOH AAA 36 636 147 HOH HOH . G 5 HOH AAA 37 637 14 HOH HOH . G 5 HOH AAA 38 638 61 HOH HOH . G 5 HOH AAA 39 639 27 HOH HOH . G 5 HOH AAA 40 640 18 HOH HOH . G 5 HOH AAA 41 641 26 HOH HOH . G 5 HOH AAA 42 642 40 HOH HOH . G 5 HOH AAA 43 643 19 HOH HOH . G 5 HOH AAA 44 644 150 HOH HOH . G 5 HOH AAA 45 645 53 HOH HOH . G 5 HOH AAA 46 646 6 HOH HOH . G 5 HOH AAA 47 647 119 HOH HOH . G 5 HOH AAA 48 648 8 HOH HOH . G 5 HOH AAA 49 649 49 HOH HOH . G 5 HOH AAA 50 650 154 HOH HOH . G 5 HOH AAA 51 651 60 HOH HOH . G 5 HOH AAA 52 652 73 HOH HOH . G 5 HOH AAA 53 653 21 HOH HOH . G 5 HOH AAA 54 654 22 HOH HOH . G 5 HOH AAA 55 655 33 HOH HOH . G 5 HOH AAA 56 656 13 HOH HOH . G 5 HOH AAA 57 657 35 HOH HOH . G 5 HOH AAA 58 658 20 HOH HOH . G 5 HOH AAA 59 659 89 HOH HOH . G 5 HOH AAA 60 660 88 HOH HOH . G 5 HOH AAA 61 661 37 HOH HOH . G 5 HOH AAA 62 662 116 HOH HOH . G 5 HOH AAA 63 663 159 HOH HOH . G 5 HOH AAA 64 664 103 HOH HOH . G 5 HOH AAA 65 665 81 HOH HOH . G 5 HOH AAA 66 666 38 HOH HOH . G 5 HOH AAA 67 667 123 HOH HOH . G 5 HOH AAA 68 668 34 HOH HOH . G 5 HOH AAA 69 669 108 HOH HOH . G 5 HOH AAA 70 670 162 HOH HOH . G 5 HOH AAA 71 671 64 HOH HOH . G 5 HOH AAA 72 672 143 HOH HOH . G 5 HOH AAA 73 673 47 HOH HOH . G 5 HOH AAA 74 674 157 HOH HOH . G 5 HOH AAA 75 675 79 HOH HOH . G 5 HOH AAA 76 676 127 HOH HOH . G 5 HOH AAA 77 677 28 HOH HOH . G 5 HOH AAA 78 678 58 HOH HOH . G 5 HOH AAA 79 679 1 HOH HOH . G 5 HOH AAA 80 680 101 HOH HOH . G 5 HOH AAA 81 681 111 HOH HOH . G 5 HOH AAA 82 682 166 HOH HOH . G 5 HOH AAA 83 683 41 HOH HOH . G 5 HOH AAA 84 684 77 HOH HOH . G 5 HOH AAA 85 685 84 HOH HOH . G 5 HOH AAA 86 686 52 HOH HOH . G 5 HOH AAA 87 687 24 HOH HOH . G 5 HOH AAA 88 688 82 HOH HOH . G 5 HOH AAA 89 689 132 HOH HOH . G 5 HOH AAA 90 690 59 HOH HOH . G 5 HOH AAA 91 691 72 HOH HOH . G 5 HOH AAA 92 692 94 HOH HOH . G 5 HOH AAA 93 693 46 HOH HOH . G 5 HOH AAA 94 694 83 HOH HOH . G 5 HOH AAA 95 695 54 HOH HOH . G 5 HOH AAA 96 696 105 HOH HOH . G 5 HOH AAA 97 697 117 HOH HOH . G 5 HOH AAA 98 698 74 HOH HOH . G 5 HOH AAA 99 699 78 HOH HOH . G 5 HOH AAA 100 700 50 HOH HOH . G 5 HOH AAA 101 701 124 HOH HOH . G 5 HOH AAA 102 702 93 HOH HOH . G 5 HOH AAA 103 703 39 HOH HOH . G 5 HOH AAA 104 704 141 HOH HOH . G 5 HOH AAA 105 705 109 HOH HOH . G 5 HOH AAA 106 706 97 HOH HOH . G 5 HOH AAA 107 707 155 HOH HOH . G 5 HOH AAA 108 708 128 HOH HOH . G 5 HOH AAA 109 709 110 HOH HOH . G 5 HOH AAA 110 710 29 HOH HOH . G 5 HOH AAA 111 711 137 HOH HOH . G 5 HOH AAA 112 712 100 HOH HOH . G 5 HOH AAA 113 713 92 HOH HOH . G 5 HOH AAA 114 714 86 HOH HOH . G 5 HOH AAA 115 715 139 HOH HOH . G 5 HOH AAA 116 716 31 HOH HOH . G 5 HOH AAA 117 717 130 HOH HOH . G 5 HOH AAA 118 718 90 HOH HOH . G 5 HOH AAA 119 719 148 HOH HOH . G 5 HOH AAA 120 720 95 HOH HOH . G 5 HOH AAA 121 721 125 HOH HOH . G 5 HOH AAA 122 722 87 HOH HOH . G 5 HOH AAA 123 723 134 HOH HOH . G 5 HOH AAA 124 724 80 HOH HOH . G 5 HOH AAA 125 725 131 HOH HOH . G 5 HOH AAA 126 726 149 HOH HOH . G 5 HOH AAA 127 727 120 HOH HOH . G 5 HOH AAA 128 728 43 HOH HOH . G 5 HOH AAA 129 729 96 HOH HOH . G 5 HOH AAA 130 730 42 HOH HOH . G 5 HOH AAA 131 731 69 HOH HOH . G 5 HOH AAA 132 732 45 HOH HOH . G 5 HOH AAA 133 733 122 HOH HOH . G 5 HOH AAA 134 734 153 HOH HOH . G 5 HOH AAA 135 735 36 HOH HOH . G 5 HOH AAA 136 736 102 HOH HOH . G 5 HOH AAA 137 737 142 HOH HOH . G 5 HOH AAA 138 738 138 HOH HOH . G 5 HOH AAA 139 739 140 HOH HOH . G 5 HOH AAA 140 740 99 HOH HOH . G 5 HOH AAA 141 741 158 HOH HOH . G 5 HOH AAA 142 742 161 HOH HOH . G 5 HOH AAA 143 743 114 HOH HOH . G 5 HOH AAA 144 744 126 HOH HOH . G 5 HOH AAA 145 745 51 HOH HOH . G 5 HOH AAA 146 746 104 HOH HOH . G 5 HOH AAA 147 747 163 HOH HOH . G 5 HOH AAA 148 748 57 HOH HOH . G 5 HOH AAA 149 749 164 HOH HOH . G 5 HOH AAA 150 750 67 HOH HOH . G 5 HOH AAA 151 751 113 HOH HOH . G 5 HOH AAA 152 752 129 HOH HOH . G 5 HOH AAA 153 753 135 HOH HOH . G 5 HOH AAA 154 754 71 HOH HOH . G 5 HOH AAA 155 755 115 HOH HOH . G 5 HOH AAA 156 756 76 HOH HOH . G 5 HOH AAA 157 757 85 HOH HOH . G 5 HOH AAA 158 758 165 HOH HOH . G 5 HOH AAA 159 759 91 HOH HOH . G 5 HOH AAA 160 760 136 HOH HOH . G 5 HOH AAA 161 761 68 HOH HOH . G 5 HOH AAA 162 762 121 HOH HOH . G 5 HOH AAA 163 763 118 HOH HOH . G 5 HOH AAA 164 764 98 HOH HOH . G 5 HOH AAA 165 765 151 HOH HOH . G 5 HOH AAA 166 766 144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 QD5 . . . E 3 43.365 16.776 7.998 1 26.04 ? C10 QD5 504 AAA 1 HETATM 2 C C13 QD5 . . . E 3 42.945 18.472 9.662 1 25.35 ? C13 QD5 504 AAA 1 HETATM 3 C C20 QD5 . . . E 3 39.338 17.561 11.075 1 36.7 ? C20 QD5 504 AAA 1 HETATM 4 C C22 QD5 . . . E 3 38.929 16.758 12.124 1 36.99 ? C22 QD5 504 AAA 1 HETATM 5 C C24 QD5 . . . E 3 39.444 16.945 13.391 1 35.89 ? C24 QD5 504 AAA 1 HETATM 6 C C26 QD5 . . . E 3 40.381 17.952 13.587 1 41.72 ? C26 QD5 504 AAA 1 HETATM 7 C C01 QD5 . . . E 3 39.735 14.979 5.211 1 19.41 ? C01 QD5 504 AAA 1 HETATM 8 N N05 QD5 . . . E 3 40.303 15.892 6.185 1 19.2 ? N05 QD5 504 AAA 1 HETATM 9 C C07 QD5 . . . E 3 41.589 15.862 6.509 1 21.36 ? C07 QD5 504 AAA 1 HETATM 10 O O08 QD5 . . . E 3 42.344 15.01 6.039 1 21.6 ? O08 QD5 504 AAA 1 HETATM 11 C C09 QD5 . . . E 3 42.062 16.805 7.58 1 24.66 ? C09 QD5 504 AAA 1 HETATM 12 C C12 QD5 . . . E 3 43.835 17.635 9.079 1 25.67 ? C12 QD5 504 AAA 1 HETATM 13 N N15 QD5 . . . E 3 41.637 18.554 9.279 1 27.76 ? N15 QD5 504 AAA 1 HETATM 14 C C16 QD5 . . . E 3 40.718 19.412 10.048 1 31.15 ? C16 QD5 504 AAA 1 HETATM 15 C C19 QD5 . . . E 3 40.249 18.598 11.241 1 34.54 ? C19 QD5 504 AAA 1 HETATM 16 N N27 QD5 . . . E 3 41.045 18.353 14.719 1 48.67 ? N27 QD5 504 AAA 1 HETATM 17 C C29 QD5 . . . E 3 41.873 19.401 14.402 1 52.53 ? C29 QD5 504 AAA 1 HETATM 18 C C31 QD5 . . . E 3 41.759 19.695 13.081 1 52.77 ? C31 QD5 504 AAA 1 HETATM 19 C C33 QD5 . . . E 3 40.806 18.776 12.522 1 42.04 ? C33 QD5 504 AAA 1 HETATM 20 C C34 QD5 . . . E 3 41.106 17.73 8.283 1 25.19 ? C34 QD5 504 AAA 1 HETATM 21 O O35 QD5 . . . E 3 39.929 17.817 7.973 1 23.68 ? O35 QD5 504 AAA 1 HETATM 22 C C36 QD5 . . . E 3 45.225 17.685 9.582 1 24.35 ? C36 QD5 504 AAA 1 HETATM 23 O O37 QD5 . . . E 3 45.601 18.695 10.179 1 23.9 ? O37 QD5 504 AAA 1 HETATM 24 N N38 QD5 . . . E 3 46.049 16.639 9.428 1 23.89 ? N38 QD5 504 AAA 1 HETATM 25 C C40 QD5 . . . E 3 47.42 16.697 9.929 1 23.5 ? C40 QD5 504 AAA 1 HETATM 26 C C42 QD5 . . . E 3 48.295 15.545 9.664 1 22.83 ? C42 QD5 504 AAA 1 HETATM 27 C C45 QD5 . . . E 3 47.808 15.816 11.041 1 23.54 ? C45 QD5 504 AAA 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 42 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 27 #