data_6ZBM
#
_model_server_result.job_id            0kcBmqv0tGfbW7nDAzendA 
_model_server_result.datetime_utc      '2024-11-27 04:14:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zbm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    6ZBM 
#
_exptl.entry_id    6ZBM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.23 
_cell.angle_gamma         90 
_cell.entry_id            6ZBM 
_cell.length_a            43.768 
_cell.length_b            66.121 
_cell.length_c            49.397 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZBM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OD2 ASP 111 A ASP 124 1_555 D C1 QE8 . A QE8 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale2 D O61 QE8 . A QE8 403 1_555 E C1 MAN . A MAN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6ZBM 
_atom_sites.fract_transf_matrix[1][1]    0.022848 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004124 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015124 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020571 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 401 401 EDO EDO . 
C 2 EDO A 1 402 501 EDO EDO . 
D 3 QE8 A 1 403 601 QE8 XXX . 
E 4 MAN A 1 404 701 MAN MAN . 
F 5 HOH A 1 501 149 HOH HOH . 
F 5 HOH A 2 502 177 HOH HOH . 
F 5 HOH A 3 503 148 HOH HOH . 
F 5 HOH A 4 504 156 HOH HOH . 
F 5 HOH A 5 505 39 HOH HOH . 
F 5 HOH A 6 506 134 HOH HOH . 
F 5 HOH A 7 507 76 HOH HOH . 
F 5 HOH A 8 508 99 HOH HOH . 
F 5 HOH A 9 509 130 HOH HOH . 
F 5 HOH A 10 510 25 HOH HOH . 
F 5 HOH A 11 511 28 HOH HOH . 
F 5 HOH A 12 512 11 HOH HOH . 
F 5 HOH A 13 513 119 HOH HOH . 
F 5 HOH A 14 514 114 HOH HOH . 
F 5 HOH A 15 515 110 HOH HOH . 
F 5 HOH A 16 516 81 HOH HOH . 
F 5 HOH A 17 517 105 HOH HOH . 
F 5 HOH A 18 518 158 HOH HOH . 
F 5 HOH A 19 519 180 HOH HOH . 
F 5 HOH A 20 520 48 HOH HOH . 
F 5 HOH A 21 521 161 HOH HOH . 
F 5 HOH A 22 522 174 HOH HOH . 
F 5 HOH A 23 523 126 HOH HOH . 
F 5 HOH A 24 524 150 HOH HOH . 
F 5 HOH A 25 525 131 HOH HOH . 
F 5 HOH A 26 526 21 HOH HOH . 
F 5 HOH A 27 527 133 HOH HOH . 
F 5 HOH A 28 528 55 HOH HOH . 
F 5 HOH A 29 529 184 HOH HOH . 
F 5 HOH A 30 530 34 HOH HOH . 
F 5 HOH A 31 531 188 HOH HOH . 
F 5 HOH A 32 532 70 HOH HOH . 
F 5 HOH A 33 533 86 HOH HOH . 
F 5 HOH A 34 534 4 HOH HOH . 
F 5 HOH A 35 535 20 HOH HOH . 
F 5 HOH A 36 536 16 HOH HOH . 
F 5 HOH A 37 537 33 HOH HOH . 
F 5 HOH A 38 538 32 HOH HOH . 
F 5 HOH A 39 539 168 HOH HOH . 
F 5 HOH A 40 540 132 HOH HOH . 
F 5 HOH A 41 541 30 HOH HOH . 
F 5 HOH A 42 542 57 HOH HOH . 
F 5 HOH A 43 543 9 HOH HOH . 
F 5 HOH A 44 544 40 HOH HOH . 
F 5 HOH A 45 545 111 HOH HOH . 
F 5 HOH A 46 546 2 HOH HOH . 
F 5 HOH A 47 547 1 HOH HOH . 
F 5 HOH A 48 548 90 HOH HOH . 
F 5 HOH A 49 549 124 HOH HOH . 
F 5 HOH A 50 550 41 HOH HOH . 
F 5 HOH A 51 551 107 HOH HOH . 
F 5 HOH A 52 552 23 HOH HOH . 
F 5 HOH A 53 553 18 HOH HOH . 
F 5 HOH A 54 554 75 HOH HOH . 
F 5 HOH A 55 555 44 HOH HOH . 
F 5 HOH A 56 556 127 HOH HOH . 
F 5 HOH A 57 557 66 HOH HOH . 
F 5 HOH A 58 558 26 HOH HOH . 
F 5 HOH A 59 559 172 HOH HOH . 
F 5 HOH A 60 560 122 HOH HOH . 
F 5 HOH A 61 561 95 HOH HOH . 
F 5 HOH A 62 562 98 HOH HOH . 
F 5 HOH A 63 563 17 HOH HOH . 
F 5 HOH A 64 564 88 HOH HOH . 
F 5 HOH A 65 565 64 HOH HOH . 
F 5 HOH A 66 566 113 HOH HOH . 
F 5 HOH A 67 567 61 HOH HOH . 
F 5 HOH A 68 568 91 HOH HOH . 
F 5 HOH A 69 569 106 HOH HOH . 
F 5 HOH A 70 570 77 HOH HOH . 
F 5 HOH A 71 571 53 HOH HOH . 
F 5 HOH A 72 572 151 HOH HOH . 
F 5 HOH A 73 573 82 HOH HOH . 
F 5 HOH A 74 574 36 HOH HOH . 
F 5 HOH A 75 575 31 HOH HOH . 
F 5 HOH A 76 576 52 HOH HOH . 
F 5 HOH A 77 577 170 HOH HOH . 
F 5 HOH A 78 578 164 HOH HOH . 
F 5 HOH A 79 579 185 HOH HOH . 
F 5 HOH A 80 580 7 HOH HOH . 
F 5 HOH A 81 581 27 HOH HOH . 
F 5 HOH A 82 582 29 HOH HOH . 
F 5 HOH A 83 583 147 HOH HOH . 
F 5 HOH A 84 584 24 HOH HOH . 
F 5 HOH A 85 585 83 HOH HOH . 
F 5 HOH A 86 586 35 HOH HOH . 
F 5 HOH A 87 587 94 HOH HOH . 
F 5 HOH A 88 588 13 HOH HOH . 
F 5 HOH A 89 589 8 HOH HOH . 
F 5 HOH A 90 590 47 HOH HOH . 
F 5 HOH A 91 591 182 HOH HOH . 
F 5 HOH A 92 592 120 HOH HOH . 
F 5 HOH A 93 593 128 HOH HOH . 
F 5 HOH A 94 594 108 HOH HOH . 
F 5 HOH A 95 595 136 HOH HOH . 
F 5 HOH A 96 596 71 HOH HOH . 
F 5 HOH A 97 597 19 HOH HOH . 
F 5 HOH A 98 598 80 HOH HOH . 
F 5 HOH A 99 599 74 HOH HOH . 
F 5 HOH A 100 600 3 HOH HOH . 
F 5 HOH A 101 601 166 HOH HOH . 
F 5 HOH A 102 602 12 HOH HOH . 
F 5 HOH A 103 603 176 HOH HOH . 
F 5 HOH A 104 604 14 HOH HOH . 
F 5 HOH A 105 605 72 HOH HOH . 
F 5 HOH A 106 606 97 HOH HOH . 
F 5 HOH A 107 607 175 HOH HOH . 
F 5 HOH A 108 608 116 HOH HOH . 
F 5 HOH A 109 609 145 HOH HOH . 
F 5 HOH A 110 610 68 HOH HOH . 
F 5 HOH A 111 611 54 HOH HOH . 
F 5 HOH A 112 612 101 HOH HOH . 
F 5 HOH A 113 613 60 HOH HOH . 
F 5 HOH A 114 614 103 HOH HOH . 
F 5 HOH A 115 615 46 HOH HOH . 
F 5 HOH A 116 616 100 HOH HOH . 
F 5 HOH A 117 617 59 HOH HOH . 
F 5 HOH A 118 618 169 HOH HOH . 
F 5 HOH A 119 619 123 HOH HOH . 
F 5 HOH A 120 620 62 HOH HOH . 
F 5 HOH A 121 621 178 HOH HOH . 
F 5 HOH A 122 622 92 HOH HOH . 
F 5 HOH A 123 623 85 HOH HOH . 
F 5 HOH A 124 624 10 HOH HOH . 
F 5 HOH A 125 625 73 HOH HOH . 
F 5 HOH A 126 626 186 HOH HOH . 
F 5 HOH A 127 627 37 HOH HOH . 
F 5 HOH A 128 628 129 HOH HOH . 
F 5 HOH A 129 629 138 HOH HOH . 
F 5 HOH A 130 630 167 HOH HOH . 
F 5 HOH A 131 631 56 HOH HOH . 
F 5 HOH A 132 632 6 HOH HOH . 
F 5 HOH A 133 633 43 HOH HOH . 
F 5 HOH A 134 634 154 HOH HOH . 
F 5 HOH A 135 635 160 HOH HOH . 
F 5 HOH A 136 636 78 HOH HOH . 
F 5 HOH A 137 637 121 HOH HOH . 
F 5 HOH A 138 638 79 HOH HOH . 
F 5 HOH A 139 639 187 HOH HOH . 
F 5 HOH A 140 640 102 HOH HOH . 
F 5 HOH A 141 641 42 HOH HOH . 
F 5 HOH A 142 642 115 HOH HOH . 
F 5 HOH A 143 643 58 HOH HOH . 
F 5 HOH A 144 644 63 HOH HOH . 
F 5 HOH A 145 645 96 HOH HOH . 
F 5 HOH A 146 646 69 HOH HOH . 
F 5 HOH A 147 647 50 HOH HOH . 
F 5 HOH A 148 648 171 HOH HOH . 
F 5 HOH A 149 649 84 HOH HOH . 
F 5 HOH A 150 650 104 HOH HOH . 
F 5 HOH A 151 651 159 HOH HOH . 
F 5 HOH A 152 652 165 HOH HOH . 
F 5 HOH A 153 653 51 HOH HOH . 
F 5 HOH A 154 654 117 HOH HOH . 
F 5 HOH A 155 655 5 HOH HOH . 
F 5 HOH A 156 656 155 HOH HOH . 
F 5 HOH A 157 657 109 HOH HOH . 
F 5 HOH A 158 658 142 HOH HOH . 
F 5 HOH A 159 659 135 HOH HOH . 
F 5 HOH A 160 660 173 HOH HOH . 
F 5 HOH A 161 661 139 HOH HOH . 
F 5 HOH A 162 662 140 HOH HOH . 
F 5 HOH A 163 663 65 HOH HOH . 
F 5 HOH A 164 664 67 HOH HOH . 
F 5 HOH A 165 665 144 HOH HOH . 
F 5 HOH A 166 666 183 HOH HOH . 
F 5 HOH A 167 667 137 HOH HOH . 
F 5 HOH A 168 668 38 HOH HOH . 
F 5 HOH A 169 669 87 HOH HOH . 
F 5 HOH A 170 670 179 HOH HOH . 
F 5 HOH A 171 671 181 HOH HOH . 
F 5 HOH A 172 672 125 HOH HOH . 
F 5 HOH A 173 673 112 HOH HOH . 
F 5 HOH A 174 674 118 HOH HOH . 
F 5 HOH A 175 675 143 HOH HOH . 
F 5 HOH A 176 676 93 HOH HOH . 
F 5 HOH A 177 677 146 HOH HOH . 
F 5 HOH A 178 678 153 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . B 2 -20.305 -4.906 11.907 1 21.94 ? C1 EDO 401 A 1 
HETATM 2 O O1 EDO . . . B 2 -19.3 -4.341 12.717 1 24.41 ? O1 EDO 401 A 1 
HETATM 3 C C2 EDO . . . B 2 -20.354 -6.359 12.099 1 25.36 ? C2 EDO 401 A 1 
HETATM 4 O O2 EDO . . . B 2 -20.524 -6.575 13.468 1 23.63 ? O2 EDO 401 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#