data_6ZBP
#
_model_server_result.job_id            RqHfiKIsXf1O1lGEyxrWYQ 
_model_server_result.datetime_utc      '2024-10-11 19:26:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zbp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    6ZBP 
#
_exptl.entry_id    6ZBP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6ZBP 
_cell.length_a            73.15 
_cell.length_b            73.15 
_cell.length_c            131.67 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZBP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 EEE CYS 336 1_555 A SG CYS 32 EEE CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf2 A SG CYS 50 EEE CYS 379 1_555 A SG CYS 103 EEE CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
disulf ? disulf3 A SG CYS 62 EEE CYS 391 1_555 A SG CYS 196 EEE CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
disulf ? disulf4 A SG CYS 151 EEE CYS 480 1_555 A SG CYS 159 EEE CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
disulf ? disulf5 B SG CYS 22 FFF CYS 22 1_555 B SG CYS 96 FFF CYS 96 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.093 ? 
covale ? covale1 A ND2 ASN 14 EEE ASN 343 1_555 C C1 NAG . EEE NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6ZBP 
_atom_sites.fract_transf_matrix[1][1]    0.013671 
_atom_sites.fract_transf_matrix[1][2]    0.007893 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015785 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007595 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG EEE 1 601 601 NAG NAG . 
D 4 SO4 FFF 1 201 1 SO4 SO4 . 
E 5 HOH EEE 1 701 58 HOH HOH . 
E 5 HOH EEE 2 702 46 HOH HOH . 
E 5 HOH EEE 3 703 1 HOH HOH . 
E 5 HOH EEE 4 704 8 HOH HOH . 
E 5 HOH EEE 5 705 52 HOH HOH . 
E 5 HOH EEE 6 706 59 HOH HOH . 
E 5 HOH EEE 7 707 15 HOH HOH . 
E 5 HOH EEE 8 708 32 HOH HOH . 
E 5 HOH EEE 9 709 19 HOH HOH . 
E 5 HOH EEE 10 710 67 HOH HOH . 
E 5 HOH EEE 11 711 12 HOH HOH . 
E 5 HOH EEE 12 712 27 HOH HOH . 
E 5 HOH EEE 13 713 60 HOH HOH . 
E 5 HOH EEE 14 714 3 HOH HOH . 
E 5 HOH EEE 15 715 5 HOH HOH . 
E 5 HOH EEE 16 716 58 HOH HOH . 
E 5 HOH EEE 17 717 17 HOH HOH . 
E 5 HOH EEE 18 718 48 HOH HOH . 
E 5 HOH EEE 19 719 30 HOH HOH . 
E 5 HOH EEE 20 720 3 HOH HOH . 
E 5 HOH EEE 21 721 38 HOH HOH . 
E 5 HOH EEE 22 722 2 HOH HOH . 
E 5 HOH EEE 23 723 44 HOH HOH . 
E 5 HOH EEE 24 724 61 HOH HOH . 
E 5 HOH EEE 25 725 18 HOH HOH . 
E 5 HOH EEE 26 726 35 HOH HOH . 
E 5 HOH EEE 27 727 44 HOH HOH . 
E 5 HOH EEE 28 728 40 HOH HOH . 
E 5 HOH EEE 29 729 31 HOH HOH . 
E 5 HOH EEE 30 730 29 HOH HOH . 
E 5 HOH EEE 31 731 10 HOH HOH . 
E 5 HOH EEE 32 732 1 HOH HOH . 
E 5 HOH EEE 33 733 7 HOH HOH . 
E 5 HOH EEE 34 734 24 HOH HOH . 
E 5 HOH EEE 35 735 43 HOH HOH . 
E 5 HOH EEE 36 736 28 HOH HOH . 
E 5 HOH EEE 37 737 57 HOH HOH . 
E 5 HOH EEE 38 738 17 HOH HOH . 
E 5 HOH EEE 39 739 55 HOH HOH . 
E 5 HOH EEE 40 740 34 HOH HOH . 
E 5 HOH EEE 41 741 3 HOH HOH . 
E 5 HOH EEE 42 742 11 HOH HOH . 
E 5 HOH EEE 43 743 57 HOH HOH . 
E 5 HOH EEE 44 744 64 HOH HOH . 
E 5 HOH EEE 45 745 33 HOH HOH . 
E 5 HOH EEE 46 746 20 HOH HOH . 
E 5 HOH EEE 47 747 15 HOH HOH . 
E 5 HOH EEE 48 748 21 HOH HOH . 
E 5 HOH EEE 49 749 7 HOH HOH . 
E 5 HOH EEE 50 750 24 HOH HOH . 
E 5 HOH EEE 51 751 47 HOH HOH . 
E 5 HOH EEE 52 752 15 HOH HOH . 
E 5 HOH EEE 53 753 7 HOH HOH . 
E 5 HOH EEE 54 754 25 HOH HOH . 
E 5 HOH EEE 55 755 25 HOH HOH . 
E 5 HOH EEE 56 756 9 HOH HOH . 
E 5 HOH EEE 57 757 53 HOH HOH . 
E 5 HOH EEE 58 758 41 HOH HOH . 
E 5 HOH EEE 59 759 23 HOH HOH . 
E 5 HOH EEE 60 760 14 HOH HOH . 
E 5 HOH EEE 61 761 26 HOH HOH . 
E 5 HOH EEE 62 762 8 HOH HOH . 
E 5 HOH EEE 63 763 1 HOH HOH . 
E 5 HOH EEE 64 764 39 HOH HOH . 
E 5 HOH EEE 65 765 52 HOH HOH . 
E 5 HOH EEE 66 766 49 HOH HOH . 
E 5 HOH EEE 67 767 19 HOH HOH . 
E 5 HOH EEE 68 768 32 HOH HOH . 
E 5 HOH EEE 69 769 31 HOH HOH . 
E 5 HOH EEE 70 770 28 HOH HOH . 
E 5 HOH EEE 71 771 50 HOH HOH . 
E 5 HOH EEE 72 772 51 HOH HOH . 
F 5 HOH FFF 1 301 63 HOH HOH . 
F 5 HOH FFF 2 302 62 HOH HOH . 
F 5 HOH FFF 3 303 37 HOH HOH . 
F 5 HOH FFF 4 304 16 HOH HOH . 
F 5 HOH FFF 5 305 45 HOH HOH . 
F 5 HOH FFF 6 306 75 HOH HOH . 
F 5 HOH FFF 7 307 31 HOH HOH . 
F 5 HOH FFF 8 308 42 HOH HOH . 
F 5 HOH FFF 9 309 4 HOH HOH . 
F 5 HOH FFF 10 310 43 HOH HOH . 
F 5 HOH FFF 11 311 59 HOH HOH . 
F 5 HOH FFF 12 312 20 HOH HOH . 
F 5 HOH FFF 13 313 17 HOH HOH . 
F 5 HOH FFF 14 314 31 HOH HOH . 
F 5 HOH FFF 15 315 55 HOH HOH . 
F 5 HOH FFF 16 316 26 HOH HOH . 
F 5 HOH FFF 17 317 27 HOH HOH . 
F 5 HOH FFF 18 318 47 HOH HOH . 
F 5 HOH FFF 19 319 6 HOH HOH . 
F 5 HOH FFF 20 320 36 HOH HOH . 
F 5 HOH FFF 21 321 10 HOH HOH . 
F 5 HOH FFF 22 322 68 HOH HOH . 
F 5 HOH FFF 23 323 8 HOH HOH . 
F 5 HOH FFF 24 324 49 HOH HOH . 
F 5 HOH FFF 25 325 54 HOH HOH . 
F 5 HOH FFF 26 326 6 HOH HOH . 
F 5 HOH FFF 27 327 22 HOH HOH . 
F 5 HOH FFF 28 328 54 HOH HOH . 
F 5 HOH FFF 29 329 8 HOH HOH . 
F 5 HOH FFF 30 330 53 HOH HOH . 
F 5 HOH FFF 31 331 56 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 3 40.831 5.775 -4.762 1 70.58 ? C1 NAG 601 EEE 1 
HETATM 2 C C2 NAG . . . C 3 40.978 4.282 -4.504 1 72.68 ? C2 NAG 601 EEE 1 
HETATM 3 C C3 NAG . . . C 3 41.161 4.031 -2.999 1 76.97 ? C3 NAG 601 EEE 1 
HETATM 4 C C4 NAG . . . C 3 42.238 4.921 -2.37 1 86.95 ? C4 NAG 601 EEE 1 
HETATM 5 C C5 NAG . . . C 3 42.243 6.358 -2.902 1 89.09 ? C5 NAG 601 EEE 1 
HETATM 6 C C6 NAG . . . C 3 43.581 7.036 -2.606 1 83.87 ? C6 NAG 601 EEE 1 
HETATM 7 C C7 NAG . . . C 3 39.804 2.437 -5.604 1 70.23 ? C7 NAG 601 EEE 1 
HETATM 8 C C8 NAG . . . C 3 38.478 1.743 -5.735 1 62.22 ? C8 NAG 601 EEE 1 
HETATM 9 N N2 NAG . . . C 3 39.781 3.567 -4.9 1 68.29 ? N2 NAG 601 EEE 1 
HETATM 10 O O3 NAG . . . C 3 41.481 2.646 -2.747 1 74.59 ? O3 NAG 601 EEE 1 
HETATM 11 O O4 NAG . . . C 3 42.039 4.99 -0.95 1 88.22 ? O4 NAG 601 EEE 1 
HETATM 12 O O5 NAG . . . C 3 42.023 6.418 -4.313 1 80.5 ? O5 NAG 601 EEE 1 
HETATM 13 O O6 NAG . . . C 3 43.305 8.275 -1.96 1 79.19 ? O6 NAG 601 EEE 1 
HETATM 14 O O7 NAG . . . C 3 40.823 1.967 -6.085 1 71.92 ? O7 NAG 601 EEE 1 
HETATM 15 H H1 NAG . . . C 3 40.007 6.103 -4.114 1 73.02 ? H1 NAG 601 EEE 1 
HETATM 16 H H2 NAG . . . C 3 41.857 3.907 -5.046 1 72.2 ? H2 NAG 601 EEE 1 
HETATM 17 H H3 NAG . . . C 3 40.207 4.267 -2.507 1 77.46 ? H3 NAG 601 EEE 1 
HETATM 18 H H4 NAG . . . C 3 43.216 4.467 -2.581 1 85.57 ? H4 NAG 601 EEE 1 
HETATM 19 H H5 NAG . . . C 3 41.446 6.914 -2.387 1 85.94 ? H5 NAG 601 EEE 1 
HETATM 20 H H61 NAG . . . C 3 44.131 7.212 -3.533 1 83.92 ? H61 NAG 601 EEE 1 
HETATM 21 H H62 NAG . . . C 3 44.195 6.412 -1.954 1 83.93 ? H62 NAG 601 EEE 1 
HETATM 22 H H81 NAG . . . C 3 37.884 2.245 -6.453 1 64.35 ? H81 NAG 601 EEE 1 
HETATM 23 H H82 NAG . . . C 3 38.636 0.743 -6.044 1 64.38 ? H82 NAG 601 EEE 1 
HETATM 24 H H83 NAG . . . C 3 37.982 1.748 -4.798 1 64.51 ? H83 NAG 601 EEE 1 
HETATM 25 H HN2 NAG . . . C 3 38.901 3.913 -4.547 1 69.68 ? HN2 NAG 601 EEE 1 
HETATM 26 H HO3 NAG . . . C 3 41.49 2.483 -1.796 0 73.49 ? HO3 NAG 601 EEE 1 
HETATM 27 H HO4 NAG . . . C 3 42.754 5.49 -0.54 0 86.89 ? HO4 NAG 601 EEE 1 
HETATM 28 H HO6 NAG . . . C 3 44.152 8.732 -1.789 0 77.35 ? HO6 NAG 601 EEE 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           28 
#