data_6ZDC
#
_model_server_result.job_id            A0rk5r6GGS_9ULt2jRgVYg 
_model_server_result.datetime_utc      '2024-11-06 02:56:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zdc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    6ZDC 
#
_exptl.entry_id    6ZDC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6ZDC 
_cell.length_a            38.467 
_cell.length_b            86.535 
_cell.length_c            135.916 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZDC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 16 A HIS 96 1_555 B NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
metalc ? metalc2 A NE2 HIS 42 A HIS 122 1_555 B NI NI . A NI 501 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? 
metalc ? metalc3 A NE2 HIS 45 A HIS 125 1_555 B NI NI . A NI 501 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? 
metalc ? metalc4 B NI NI . A NI 501 1_555 C O HOH . A HOH 775 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6ZDC 
_atom_sites.fract_transf_matrix[1][1]    0.025996 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011556 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007357 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NI A 1 501 501 NI NI . 
C 3 HOH A 1 601 686 HOH HOH . 
C 3 HOH A 2 602 729 HOH HOH . 
C 3 HOH A 3 603 628 HOH HOH . 
C 3 HOH A 4 604 627 HOH HOH . 
C 3 HOH A 5 605 716 HOH HOH . 
C 3 HOH A 6 606 667 HOH HOH . 
C 3 HOH A 7 607 775 HOH HOH . 
C 3 HOH A 8 608 661 HOH HOH . 
C 3 HOH A 9 609 703 HOH HOH . 
C 3 HOH A 10 610 688 HOH HOH . 
C 3 HOH A 11 611 650 HOH HOH . 
C 3 HOH A 12 612 651 HOH HOH . 
C 3 HOH A 13 613 653 HOH HOH . 
C 3 HOH A 14 614 761 HOH HOH . 
C 3 HOH A 15 615 630 HOH HOH . 
C 3 HOH A 16 616 680 HOH HOH . 
C 3 HOH A 17 617 614 HOH HOH . 
C 3 HOH A 18 618 708 HOH HOH . 
C 3 HOH A 19 619 612 HOH HOH . 
C 3 HOH A 20 620 759 HOH HOH . 
C 3 HOH A 21 621 601 HOH HOH . 
C 3 HOH A 22 622 743 HOH HOH . 
C 3 HOH A 23 623 715 HOH HOH . 
C 3 HOH A 24 624 646 HOH HOH . 
C 3 HOH A 25 625 710 HOH HOH . 
C 3 HOH A 26 626 611 HOH HOH . 
C 3 HOH A 27 627 672 HOH HOH . 
C 3 HOH A 28 628 702 HOH HOH . 
C 3 HOH A 29 629 658 HOH HOH . 
C 3 HOH A 30 630 734 HOH HOH . 
C 3 HOH A 31 631 684 HOH HOH . 
C 3 HOH A 32 632 784 HOH HOH . 
C 3 HOH A 33 633 625 HOH HOH . 
C 3 HOH A 34 634 657 HOH HOH . 
C 3 HOH A 35 635 615 HOH HOH . 
C 3 HOH A 36 636 779 HOH HOH . 
C 3 HOH A 37 637 679 HOH HOH . 
C 3 HOH A 38 638 740 HOH HOH . 
C 3 HOH A 39 639 659 HOH HOH . 
C 3 HOH A 40 640 608 HOH HOH . 
C 3 HOH A 41 641 648 HOH HOH . 
C 3 HOH A 42 642 783 HOH HOH . 
C 3 HOH A 43 643 616 HOH HOH . 
C 3 HOH A 44 644 668 HOH HOH . 
C 3 HOH A 45 645 760 HOH HOH . 
C 3 HOH A 46 646 678 HOH HOH . 
C 3 HOH A 47 647 765 HOH HOH . 
C 3 HOH A 48 648 709 HOH HOH . 
C 3 HOH A 49 649 693 HOH HOH . 
C 3 HOH A 50 650 634 HOH HOH . 
C 3 HOH A 51 651 707 HOH HOH . 
C 3 HOH A 52 652 626 HOH HOH . 
C 3 HOH A 53 653 624 HOH HOH . 
C 3 HOH A 54 654 689 HOH HOH . 
C 3 HOH A 55 655 762 HOH HOH . 
C 3 HOH A 56 656 654 HOH HOH . 
C 3 HOH A 57 657 777 HOH HOH . 
C 3 HOH A 58 658 652 HOH HOH . 
C 3 HOH A 59 659 636 HOH HOH . 
C 3 HOH A 60 660 732 HOH HOH . 
C 3 HOH A 61 661 602 HOH HOH . 
C 3 HOH A 62 662 756 HOH HOH . 
C 3 HOH A 63 663 676 HOH HOH . 
C 3 HOH A 64 664 726 HOH HOH . 
C 3 HOH A 65 665 609 HOH HOH . 
C 3 HOH A 66 666 749 HOH HOH . 
C 3 HOH A 67 667 752 HOH HOH . 
C 3 HOH A 68 668 606 HOH HOH . 
C 3 HOH A 69 669 685 HOH HOH . 
C 3 HOH A 70 670 758 HOH HOH . 
C 3 HOH A 71 671 720 HOH HOH . 
C 3 HOH A 72 672 631 HOH HOH . 
C 3 HOH A 73 673 682 HOH HOH . 
C 3 HOH A 74 674 607 HOH HOH . 
C 3 HOH A 75 675 619 HOH HOH . 
C 3 HOH A 76 676 687 HOH HOH . 
C 3 HOH A 77 677 747 HOH HOH . 
C 3 HOH A 78 678 670 HOH HOH . 
C 3 HOH A 79 679 738 HOH HOH . 
C 3 HOH A 80 680 681 HOH HOH . 
C 3 HOH A 81 681 674 HOH HOH . 
C 3 HOH A 82 682 610 HOH HOH . 
C 3 HOH A 83 683 723 HOH HOH . 
C 3 HOH A 84 684 733 HOH HOH . 
C 3 HOH A 85 685 741 HOH HOH . 
C 3 HOH A 86 686 633 HOH HOH . 
C 3 HOH A 87 687 660 HOH HOH . 
C 3 HOH A 88 688 727 HOH HOH . 
C 3 HOH A 89 689 764 HOH HOH . 
C 3 HOH A 90 690 713 HOH HOH . 
C 3 HOH A 91 691 629 HOH HOH . 
C 3 HOH A 92 692 768 HOH HOH . 
C 3 HOH A 93 693 635 HOH HOH . 
C 3 HOH A 94 694 662 HOH HOH . 
C 3 HOH A 95 695 604 HOH HOH . 
C 3 HOH A 96 696 671 HOH HOH . 
C 3 HOH A 97 697 632 HOH HOH . 
C 3 HOH A 98 698 637 HOH HOH . 
C 3 HOH A 99 699 697 HOH HOH . 
C 3 HOH A 100 700 696 HOH HOH . 
C 3 HOH A 101 701 683 HOH HOH . 
C 3 HOH A 102 702 700 HOH HOH . 
C 3 HOH A 103 703 731 HOH HOH . 
C 3 HOH A 104 704 656 HOH HOH . 
C 3 HOH A 105 705 718 HOH HOH . 
C 3 HOH A 106 706 724 HOH HOH . 
C 3 HOH A 107 707 692 HOH HOH . 
C 3 HOH A 108 708 745 HOH HOH . 
C 3 HOH A 109 709 776 HOH HOH . 
C 3 HOH A 110 710 767 HOH HOH . 
C 3 HOH A 111 711 638 HOH HOH . 
C 3 HOH A 112 712 728 HOH HOH . 
C 3 HOH A 113 713 755 HOH HOH . 
C 3 HOH A 114 714 717 HOH HOH . 
C 3 HOH A 115 715 773 HOH HOH . 
C 3 HOH A 116 716 640 HOH HOH . 
C 3 HOH A 117 717 617 HOH HOH . 
C 3 HOH A 118 718 770 HOH HOH . 
C 3 HOH A 119 719 669 HOH HOH . 
C 3 HOH A 120 720 641 HOH HOH . 
C 3 HOH A 121 721 704 HOH HOH . 
C 3 HOH A 122 722 603 HOH HOH . 
C 3 HOH A 123 723 748 HOH HOH . 
C 3 HOH A 124 724 771 HOH HOH . 
C 3 HOH A 125 725 711 HOH HOH . 
C 3 HOH A 126 726 705 HOH HOH . 
C 3 HOH A 127 727 644 HOH HOH . 
C 3 HOH A 128 728 712 HOH HOH . 
C 3 HOH A 129 729 769 HOH HOH . 
C 3 HOH A 130 730 666 HOH HOH . 
C 3 HOH A 131 731 622 HOH HOH . 
C 3 HOH A 132 732 623 HOH HOH . 
C 3 HOH A 133 733 665 HOH HOH . 
C 3 HOH A 134 734 746 HOH HOH . 
C 3 HOH A 135 735 647 HOH HOH . 
C 3 HOH A 136 736 677 HOH HOH . 
C 3 HOH A 137 737 706 HOH HOH . 
C 3 HOH A 138 738 618 HOH HOH . 
C 3 HOH A 139 739 663 HOH HOH . 
C 3 HOH A 140 740 722 HOH HOH . 
C 3 HOH A 141 741 751 HOH HOH . 
C 3 HOH A 142 742 645 HOH HOH . 
C 3 HOH A 143 743 782 HOH HOH . 
C 3 HOH A 144 744 735 HOH HOH . 
C 3 HOH A 145 745 613 HOH HOH . 
C 3 HOH A 146 746 620 HOH HOH . 
C 3 HOH A 147 747 725 HOH HOH . 
C 3 HOH A 148 748 714 HOH HOH . 
C 3 HOH A 149 749 643 HOH HOH . 
C 3 HOH A 150 750 694 HOH HOH . 
C 3 HOH A 151 751 739 HOH HOH . 
C 3 HOH A 152 752 781 HOH HOH . 
C 3 HOH A 153 753 736 HOH HOH . 
C 3 HOH A 154 754 690 HOH HOH . 
C 3 HOH A 155 755 742 HOH HOH . 
C 3 HOH A 156 756 642 HOH HOH . 
C 3 HOH A 157 757 664 HOH HOH . 
C 3 HOH A 158 758 763 HOH HOH . 
C 3 HOH A 159 759 778 HOH HOH . 
C 3 HOH A 160 760 780 HOH HOH . 
C 3 HOH A 161 761 673 HOH HOH . 
C 3 HOH A 162 762 701 HOH HOH . 
C 3 HOH A 163 763 730 HOH HOH . 
C 3 HOH A 164 764 695 HOH HOH . 
C 3 HOH A 165 765 655 HOH HOH . 
C 3 HOH A 166 766 744 HOH HOH . 
C 3 HOH A 167 767 721 HOH HOH . 
C 3 HOH A 168 768 621 HOH HOH . 
C 3 HOH A 169 769 605 HOH HOH . 
C 3 HOH A 170 770 774 HOH HOH . 
C 3 HOH A 171 771 757 HOH HOH . 
C 3 HOH A 172 772 698 HOH HOH . 
C 3 HOH A 173 773 719 HOH HOH . 
C 3 HOH A 174 774 699 HOH HOH . 
C 3 HOH A 175 775 772 HOH HOH . 
C 3 HOH A 176 776 750 HOH HOH . 
C 3 HOH A 177 777 737 HOH HOH . 
C 3 HOH A 178 778 675 HOH HOH . 
C 3 HOH A 179 779 753 HOH HOH . 
C 3 HOH A 180 780 691 HOH HOH . 
C 3 HOH A 181 781 754 HOH HOH . 
C 3 HOH A 182 782 766 HOH HOH . 
C 3 HOH A 183 783 639 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -26.644 
_atom_site.Cartn_y               -1.389 
_atom_site.Cartn_z               33.878 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        88.35 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#