data_6ZDF # _model_server_result.job_id tWPjaA2JBe9QiFWhmRoaiQ _model_server_result.datetime_utc '2024-11-06 03:15:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zdf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 6ZDF # _exptl.entry_id 6ZDF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZDF _cell.length_a 144.245 _cell.length_b 144.245 _cell.length_c 139.661 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZDF _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 6ZDF _atom_sites.fract_transf_matrix[1][1] 0.006933 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006933 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00716 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 EPE A 1 501 501 EPE EPE . E 2 EPE B 1 501 501 EPE EPE . F 2 EPE C 1 501 501 EPE EPE . G 3 HOH A 1 601 80 HOH HOH . G 3 HOH A 2 602 78 HOH HOH . G 3 HOH A 3 603 29 HOH HOH . G 3 HOH A 4 604 72 HOH HOH . G 3 HOH A 5 605 7 HOH HOH . G 3 HOH A 6 606 10 HOH HOH . G 3 HOH A 7 607 47 HOH HOH . G 3 HOH A 8 608 124 HOH HOH . G 3 HOH A 9 609 71 HOH HOH . G 3 HOH A 10 610 92 HOH HOH . G 3 HOH A 11 611 108 HOH HOH . G 3 HOH A 12 612 23 HOH HOH . G 3 HOH A 13 613 70 HOH HOH . G 3 HOH A 14 614 28 HOH HOH . G 3 HOH A 15 615 98 HOH HOH . G 3 HOH A 16 616 74 HOH HOH . G 3 HOH A 17 617 31 HOH HOH . G 3 HOH A 18 618 120 HOH HOH . G 3 HOH A 19 619 123 HOH HOH . G 3 HOH A 20 620 79 HOH HOH . G 3 HOH A 21 621 134 HOH HOH . G 3 HOH A 22 622 117 HOH HOH . G 3 HOH A 23 623 125 HOH HOH . G 3 HOH A 24 624 139 HOH HOH . G 3 HOH A 25 625 12 HOH HOH . G 3 HOH A 26 626 76 HOH HOH . G 3 HOH A 27 627 136 HOH HOH . G 3 HOH A 28 628 86 HOH HOH . G 3 HOH A 29 629 103 HOH HOH . G 3 HOH A 30 630 46 HOH HOH . G 3 HOH A 31 631 109 HOH HOH . G 3 HOH A 32 632 90 HOH HOH . G 3 HOH A 33 633 30 HOH HOH . G 3 HOH A 34 634 51 HOH HOH . G 3 HOH A 35 635 95 HOH HOH . G 3 HOH A 36 636 137 HOH HOH . G 3 HOH A 37 637 5 HOH HOH . G 3 HOH A 38 638 4 HOH HOH . G 3 HOH A 39 639 34 HOH HOH . G 3 HOH A 40 640 52 HOH HOH . G 3 HOH A 41 641 35 HOH HOH . G 3 HOH A 42 642 105 HOH HOH . G 3 HOH A 43 643 44 HOH HOH . G 3 HOH A 44 644 130 HOH HOH . G 3 HOH A 45 645 45 HOH HOH . G 3 HOH A 46 646 19 HOH HOH . G 3 HOH A 47 647 42 HOH HOH . G 3 HOH A 48 648 53 HOH HOH . H 3 HOH B 1 601 65 HOH HOH . H 3 HOH B 2 602 67 HOH HOH . H 3 HOH B 3 603 18 HOH HOH . H 3 HOH B 4 604 22 HOH HOH . H 3 HOH B 5 605 17 HOH HOH . H 3 HOH B 6 606 110 HOH HOH . H 3 HOH B 7 607 106 HOH HOH . H 3 HOH B 8 608 6 HOH HOH . H 3 HOH B 9 609 97 HOH HOH . H 3 HOH B 10 610 81 HOH HOH . H 3 HOH B 11 611 140 HOH HOH . H 3 HOH B 12 612 83 HOH HOH . H 3 HOH B 13 613 73 HOH HOH . H 3 HOH B 14 614 94 HOH HOH . H 3 HOH B 15 615 114 HOH HOH . H 3 HOH B 16 616 87 HOH HOH . H 3 HOH B 17 617 15 HOH HOH . H 3 HOH B 18 618 84 HOH HOH . H 3 HOH B 19 619 82 HOH HOH . H 3 HOH B 20 620 32 HOH HOH . H 3 HOH B 21 621 39 HOH HOH . H 3 HOH B 22 622 122 HOH HOH . H 3 HOH B 23 623 37 HOH HOH . H 3 HOH B 24 624 3 HOH HOH . H 3 HOH B 25 625 68 HOH HOH . H 3 HOH B 26 626 40 HOH HOH . H 3 HOH B 27 627 99 HOH HOH . H 3 HOH B 28 628 91 HOH HOH . H 3 HOH B 29 629 26 HOH HOH . H 3 HOH B 30 630 60 HOH HOH . H 3 HOH B 31 631 93 HOH HOH . H 3 HOH B 32 632 64 HOH HOH . H 3 HOH B 33 633 115 HOH HOH . H 3 HOH B 34 634 116 HOH HOH . H 3 HOH B 35 635 54 HOH HOH . H 3 HOH B 36 636 41 HOH HOH . H 3 HOH B 37 637 25 HOH HOH . H 3 HOH B 38 638 131 HOH HOH . H 3 HOH B 39 639 135 HOH HOH . H 3 HOH B 40 640 126 HOH HOH . I 3 HOH C 1 601 21 HOH HOH . I 3 HOH C 2 602 27 HOH HOH . I 3 HOH C 3 603 8 HOH HOH . I 3 HOH C 4 604 9 HOH HOH . I 3 HOH C 5 605 43 HOH HOH . I 3 HOH C 6 606 66 HOH HOH . I 3 HOH C 7 607 14 HOH HOH . I 3 HOH C 8 608 119 HOH HOH . I 3 HOH C 9 609 121 HOH HOH . I 3 HOH C 10 610 20 HOH HOH . I 3 HOH C 11 611 129 HOH HOH . I 3 HOH C 12 612 1 HOH HOH . I 3 HOH C 13 613 33 HOH HOH . I 3 HOH C 14 614 111 HOH HOH . I 3 HOH C 15 615 69 HOH HOH . I 3 HOH C 16 616 48 HOH HOH . I 3 HOH C 17 617 36 HOH HOH . I 3 HOH C 18 618 49 HOH HOH . I 3 HOH C 19 619 102 HOH HOH . I 3 HOH C 20 620 100 HOH HOH . I 3 HOH C 21 621 107 HOH HOH . I 3 HOH C 22 622 89 HOH HOH . I 3 HOH C 23 623 75 HOH HOH . I 3 HOH C 24 624 96 HOH HOH . I 3 HOH C 25 625 13 HOH HOH . I 3 HOH C 26 626 62 HOH HOH . I 3 HOH C 27 627 11 HOH HOH . I 3 HOH C 28 628 127 HOH HOH . I 3 HOH C 29 629 16 HOH HOH . I 3 HOH C 30 630 2 HOH HOH . I 3 HOH C 31 631 50 HOH HOH . I 3 HOH C 32 632 85 HOH HOH . I 3 HOH C 33 633 24 HOH HOH . I 3 HOH C 34 634 61 HOH HOH . I 3 HOH C 35 635 77 HOH HOH . I 3 HOH C 36 636 58 HOH HOH . I 3 HOH C 37 637 88 HOH HOH . I 3 HOH C 38 638 56 HOH HOH . I 3 HOH C 39 639 59 HOH HOH . I 3 HOH C 40 640 132 HOH HOH . I 3 HOH C 41 641 128 HOH HOH . I 3 HOH C 42 642 55 HOH HOH . I 3 HOH C 43 643 133 HOH HOH . I 3 HOH C 44 644 63 HOH HOH . I 3 HOH C 45 645 101 HOH HOH . I 3 HOH C 46 646 112 HOH HOH . I 3 HOH C 47 647 104 HOH HOH . I 3 HOH C 48 648 38 HOH HOH . I 3 HOH C 49 649 113 HOH HOH . I 3 HOH C 50 650 138 HOH HOH . I 3 HOH C 51 651 57 HOH HOH . I 3 HOH C 52 652 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . D 2 -16.913 -2.283 -40.885 1 46.24 ? N1 EPE 501 A 1 HETATM 2 C C2 EPE . . . D 2 -16.155 -3.52 -40.586 1 45.16 ? C2 EPE 501 A 1 HETATM 3 C C3 EPE . . . D 2 -16.95 -4.356 -39.594 1 45.49 ? C3 EPE 501 A 1 HETATM 4 N N4 EPE . . . D 2 -16.998 -3.533 -38.367 1 45.31 ? N4 EPE 501 A 1 HETATM 5 C C5 EPE . . . D 2 -17.929 -2.397 -38.539 1 45.41 ? C5 EPE 501 A 1 HETATM 6 C C6 EPE . . . D 2 -17.5 -1.541 -39.729 1 45.86 ? C6 EPE 501 A 1 HETATM 7 C C7 EPE . . . D 2 -17.177 -4.352 -37.138 1 43.52 ? C7 EPE 501 A 1 HETATM 8 C C8 EPE . . . D 2 -18.587 -4.737 -36.671 1 40.7 ? C8 EPE 501 A 1 HETATM 9 O O8 EPE . . . D 2 -19.301 -5.445 -37.692 1 37.13 ? O8 EPE 501 A 1 HETATM 10 C C9 EPE . . . D 2 -15.956 -1.393 -41.569 1 48.4 ? C9 EPE 501 A 1 HETATM 11 C C10 EPE . . . D 2 -16.677 -0.534 -42.618 1 48.45 ? C10 EPE 501 A 1 HETATM 12 S S EPE . . . D 2 -15.863 -0.297 -44.058 1 45.62 ? S EPE 501 A 1 HETATM 13 O O1S EPE . . . D 2 -16.935 0.037 -45.021 1 47.98 ? O1S EPE 501 A 1 HETATM 14 O O2S EPE . . . D 2 -15.14 -1.509 -44.506 1 44.84 ? O2S EPE 501 A 1 HETATM 15 O O3S EPE . . . D 2 -14.872 0.803 -43.966 1 45.22 ? O3S EPE 501 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #