data_6ZDI # _model_server_result.job_id fnpM40_e1u1j49R_LlYNrw _model_server_result.datetime_utc '2025-01-05 12:06:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zdi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6ZDI # _exptl.entry_id 6ZDI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 157.099 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-fluoranyl-5-nitro-phenol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZDI _cell.length_a 91.254 _cell.length_b 91.254 _cell.length_c 133.167 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZDI _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 91.254 0 3 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 6_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 91.254 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 255 A CYS 255 1_555 A SG CYS 255 A CYS 255 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A O GLU 50 A GLU 50 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc2 A O LEU 53 A LEU 53 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc3 A O PRO 54 A PRO 54 1_555 C NA NA . A NA 302 1_555 ? B ? ? ? ? ? ? ? ? ? ? 3.114 ? metalc ? metalc4 A O ALA 56 A ALA 56 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc5 C NA NA . A NA 302 1_555 E O HOH . A HOH 447 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.251 ? metalc ? metalc6 C NA NA . A NA 302 1_555 E O HOH . A HOH 447 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.388 ? # _chem_comp.formula 'C6 H4 F N O3' _chem_comp.formula_weight 157.099 _chem_comp.id QFT _chem_comp.mon_nstd_flag . _chem_comp.name 2-fluoranyl-5-nitro-phenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 N QFT doub 352 n n N O2 QFT doub 353 n n N C2 QFT sing 354 n n C1 C2 QFT doub 355 n y C1 C QFT sing 356 n y C2 C3 QFT sing 357 n y O C QFT sing 358 n n C C5 QFT doub 359 n y C3 C4 QFT doub 360 n y C5 C4 QFT sing 361 n y C5 F QFT sing 362 n n O H1 QFT sing 363 n n C1 H2 QFT sing 364 n n C3 H3 QFT sing 365 n n C4 H4 QFT sing 366 n n # _atom_sites.entry_id 6ZDI _atom_sites.fract_transf_matrix[1][1] 0.010958 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010958 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007509 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 301 1 NAD NAD . C 3 NA A 1 302 1 NA NA . D 4 QFT A 1 303 1 QFT B27 . E 5 HOH A 1 401 14 HOH HOH . E 5 HOH A 2 402 22 HOH HOH . E 5 HOH A 3 403 5 HOH HOH . E 5 HOH A 4 404 10 HOH HOH . E 5 HOH A 5 405 42 HOH HOH . E 5 HOH A 6 406 47 HOH HOH . E 5 HOH A 7 407 7 HOH HOH . E 5 HOH A 8 408 60 HOH HOH . E 5 HOH A 9 409 53 HOH HOH . E 5 HOH A 10 410 30 HOH HOH . E 5 HOH A 11 411 51 HOH HOH . E 5 HOH A 12 412 6 HOH HOH . E 5 HOH A 13 413 55 HOH HOH . E 5 HOH A 14 414 19 HOH HOH . E 5 HOH A 15 415 17 HOH HOH . E 5 HOH A 16 416 12 HOH HOH . E 5 HOH A 17 417 48 HOH HOH . E 5 HOH A 18 418 16 HOH HOH . E 5 HOH A 19 419 59 HOH HOH . E 5 HOH A 20 420 25 HOH HOH . E 5 HOH A 21 421 21 HOH HOH . E 5 HOH A 22 422 39 HOH HOH . E 5 HOH A 23 423 57 HOH HOH . E 5 HOH A 24 424 61 HOH HOH . E 5 HOH A 25 425 50 HOH HOH . E 5 HOH A 26 426 35 HOH HOH . E 5 HOH A 27 427 40 HOH HOH . E 5 HOH A 28 428 41 HOH HOH . E 5 HOH A 29 429 28 HOH HOH . E 5 HOH A 30 430 29 HOH HOH . E 5 HOH A 31 431 18 HOH HOH . E 5 HOH A 32 432 13 HOH HOH . E 5 HOH A 33 433 58 HOH HOH . E 5 HOH A 34 434 36 HOH HOH . E 5 HOH A 35 435 24 HOH HOH . E 5 HOH A 36 436 49 HOH HOH . E 5 HOH A 37 437 56 HOH HOH . E 5 HOH A 38 438 38 HOH HOH . E 5 HOH A 39 439 27 HOH HOH . E 5 HOH A 40 440 54 HOH HOH . E 5 HOH A 41 441 26 HOH HOH . E 5 HOH A 42 442 8 HOH HOH . E 5 HOH A 43 443 15 HOH HOH . E 5 HOH A 44 444 46 HOH HOH . E 5 HOH A 45 445 34 HOH HOH . E 5 HOH A 46 446 31 HOH HOH . E 5 HOH A 47 447 52 HOH HOH . E 5 HOH A 48 448 32 HOH HOH . E 5 HOH A 49 449 23 HOH HOH . E 5 HOH A 50 450 37 HOH HOH . E 5 HOH A 51 451 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N QFT . . . D 4 -9.147 30.838 -13.975 1 32.35 ? N QFT 303 A 1 HETATM 2 C C QFT . . . D 4 -7.81 33.754 -12.097 1 27.84 ? C QFT 303 A 1 HETATM 3 O O QFT . . . D 4 -7.544 35.068 -12.329 1 29.19 ? O QFT 303 A 1 HETATM 4 C C1 QFT . . . D 4 -8.317 32.978 -13.127 1 27.59 ? C1 QFT 303 A 1 HETATM 5 C C2 QFT . . . D 4 -8.608 31.648 -12.88 1 31.04 ? C2 QFT 303 A 1 HETATM 6 C C3 QFT . . . D 4 -8.409 31.05 -11.65 1 29.39 ? C3 QFT 303 A 1 HETATM 7 C C4 QFT . . . D 4 -7.893 31.808 -10.615 1 29.12 ? C4 QFT 303 A 1 HETATM 8 C C5 QFT . . . D 4 -7.612 33.133 -10.843 1 30.97 ? C5 QFT 303 A 1 HETATM 9 F F QFT . . . D 4 -7.175 33.886 -9.804 1 33.78 ? F QFT 303 A 1 HETATM 10 O O1 QFT . . . D 4 -9.291 31.368 -15.07 1 31.94 -1 O1 QFT 303 A 1 HETATM 11 O O2 QFT . . . D 4 -9.444 29.674 -13.741 1 34.68 ? O2 QFT 303 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 462 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 11 #