data_6ZDK # _model_server_result.job_id -TnGyryeJrb7NBouPFJwAw _model_server_result.datetime_utc '2024-11-23 09:19:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zdk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6ZDK # _exptl.entry_id 6ZDK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZDK _cell.length_a 128.968 _cell.length_b 128.968 _cell.length_c 48.791 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZDK _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NZ LYS 57 AAA LYS 137 1_555 E W4 TEW . AAA TEW 504 4_655 ? ? ? ? B ? ? ? ? ? ? ? 3.29 ? metalc ? metalc2 A OE1 GLU 77 AAA GLU 157 1_555 C MG MG . AAA MG 502 5_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc3 C MG MG . AAA MG 502 1_555 G O HOH . AAA HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc4 C MG MG . AAA MG 502 1_555 G O HOH . AAA HOH 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc5 C MG MG . AAA MG 502 1_555 G O HOH . AAA HOH 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc6 C MG MG . AAA MG 502 1_555 G O HOH . AAA HOH 653 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc7 C MG MG . AAA MG 502 1_555 G O HOH . AAA HOH 694 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 6ZDK _atom_sites.fract_transf_matrix[1][1] 0.007754 _atom_sites.fract_transf_matrix[1][2] 0.004477 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008953 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020496 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EPE AAA 1 501 501 EPE EPE . C 3 MG AAA 1 502 502 MG MG . D 4 TEW AAA 1 503 503 TEW TEW . E 4 TEW AAA 1 504 504 TEW TEW . F 4 TEW AAA 1 505 505 TEW TEW . G 5 HOH AAA 1 601 760 HOH HOH . G 5 HOH AAA 2 602 765 HOH HOH . G 5 HOH AAA 3 603 656 HOH HOH . G 5 HOH AAA 4 604 702 HOH HOH . G 5 HOH AAA 5 605 671 HOH HOH . G 5 HOH AAA 6 606 716 HOH HOH . G 5 HOH AAA 7 607 646 HOH HOH . G 5 HOH AAA 8 608 655 HOH HOH . G 5 HOH AAA 9 609 651 HOH HOH . G 5 HOH AAA 10 610 738 HOH HOH . G 5 HOH AAA 11 611 648 HOH HOH . G 5 HOH AAA 12 612 677 HOH HOH . G 5 HOH AAA 13 613 762 HOH HOH . G 5 HOH AAA 14 614 718 HOH HOH . G 5 HOH AAA 15 615 619 HOH HOH . G 5 HOH AAA 16 616 681 HOH HOH . G 5 HOH AAA 17 617 694 HOH HOH . G 5 HOH AAA 18 618 622 HOH HOH . G 5 HOH AAA 19 619 707 HOH HOH . G 5 HOH AAA 20 620 763 HOH HOH . G 5 HOH AAA 21 621 621 HOH HOH . G 5 HOH AAA 22 622 755 HOH HOH . G 5 HOH AAA 23 623 652 HOH HOH . G 5 HOH AAA 24 624 633 HOH HOH . G 5 HOH AAA 25 625 654 HOH HOH . G 5 HOH AAA 26 626 695 HOH HOH . G 5 HOH AAA 27 627 670 HOH HOH . G 5 HOH AAA 28 628 639 HOH HOH . G 5 HOH AAA 29 629 747 HOH HOH . G 5 HOH AAA 30 630 666 HOH HOH . G 5 HOH AAA 31 631 758 HOH HOH . G 5 HOH AAA 32 632 741 HOH HOH . G 5 HOH AAA 33 633 730 HOH HOH . G 5 HOH AAA 34 634 614 HOH HOH . G 5 HOH AAA 35 635 640 HOH HOH . G 5 HOH AAA 36 636 615 HOH HOH . G 5 HOH AAA 37 637 647 HOH HOH . G 5 HOH AAA 38 638 721 HOH HOH . G 5 HOH AAA 39 639 664 HOH HOH . G 5 HOH AAA 40 640 683 HOH HOH . G 5 HOH AAA 41 641 627 HOH HOH . G 5 HOH AAA 42 642 732 HOH HOH . G 5 HOH AAA 43 643 684 HOH HOH . G 5 HOH AAA 44 644 653 HOH HOH . G 5 HOH AAA 45 645 650 HOH HOH . G 5 HOH AAA 46 646 645 HOH HOH . G 5 HOH AAA 47 647 706 HOH HOH . G 5 HOH AAA 48 648 750 HOH HOH . G 5 HOH AAA 49 649 734 HOH HOH . G 5 HOH AAA 50 650 634 HOH HOH . G 5 HOH AAA 51 651 759 HOH HOH . G 5 HOH AAA 52 652 673 HOH HOH . G 5 HOH AAA 53 653 761 HOH HOH . G 5 HOH AAA 54 654 726 HOH HOH . G 5 HOH AAA 55 655 737 HOH HOH . G 5 HOH AAA 56 656 754 HOH HOH . G 5 HOH AAA 57 657 742 HOH HOH . G 5 HOH AAA 58 658 649 HOH HOH . G 5 HOH AAA 59 659 729 HOH HOH . G 5 HOH AAA 60 660 612 HOH HOH . G 5 HOH AAA 61 661 723 HOH HOH . G 5 HOH AAA 62 662 605 HOH HOH . G 5 HOH AAA 63 663 663 HOH HOH . G 5 HOH AAA 64 664 672 HOH HOH . G 5 HOH AAA 65 665 715 HOH HOH . G 5 HOH AAA 66 666 617 HOH HOH . G 5 HOH AAA 67 667 637 HOH HOH . G 5 HOH AAA 68 668 625 HOH HOH . G 5 HOH AAA 69 669 616 HOH HOH . G 5 HOH AAA 70 670 745 HOH HOH . G 5 HOH AAA 71 671 669 HOH HOH . G 5 HOH AAA 72 672 749 HOH HOH . G 5 HOH AAA 73 673 606 HOH HOH . G 5 HOH AAA 74 674 630 HOH HOH . G 5 HOH AAA 75 675 724 HOH HOH . G 5 HOH AAA 76 676 613 HOH HOH . G 5 HOH AAA 77 677 740 HOH HOH . G 5 HOH AAA 78 678 725 HOH HOH . G 5 HOH AAA 79 679 696 HOH HOH . G 5 HOH AAA 80 680 687 HOH HOH . G 5 HOH AAA 81 681 661 HOH HOH . G 5 HOH AAA 82 682 628 HOH HOH . G 5 HOH AAA 83 683 631 HOH HOH . G 5 HOH AAA 84 684 624 HOH HOH . G 5 HOH AAA 85 685 602 HOH HOH . G 5 HOH AAA 86 686 682 HOH HOH . G 5 HOH AAA 87 687 751 HOH HOH . G 5 HOH AAA 88 688 748 HOH HOH . G 5 HOH AAA 89 689 699 HOH HOH . G 5 HOH AAA 90 690 676 HOH HOH . G 5 HOH AAA 91 691 636 HOH HOH . G 5 HOH AAA 92 692 618 HOH HOH . G 5 HOH AAA 93 693 608 HOH HOH . G 5 HOH AAA 94 694 764 HOH HOH . G 5 HOH AAA 95 695 698 HOH HOH . G 5 HOH AAA 96 696 644 HOH HOH . G 5 HOH AAA 97 697 722 HOH HOH . G 5 HOH AAA 98 698 626 HOH HOH . G 5 HOH AAA 99 699 752 HOH HOH . G 5 HOH AAA 100 700 757 HOH HOH . G 5 HOH AAA 101 701 704 HOH HOH . G 5 HOH AAA 102 702 686 HOH HOH . G 5 HOH AAA 103 703 643 HOH HOH . G 5 HOH AAA 104 704 693 HOH HOH . G 5 HOH AAA 105 705 689 HOH HOH . G 5 HOH AAA 106 706 731 HOH HOH . G 5 HOH AAA 107 707 660 HOH HOH . G 5 HOH AAA 108 708 635 HOH HOH . G 5 HOH AAA 109 709 743 HOH HOH . G 5 HOH AAA 110 710 610 HOH HOH . G 5 HOH AAA 111 711 667 HOH HOH . G 5 HOH AAA 112 712 736 HOH HOH . G 5 HOH AAA 113 713 675 HOH HOH . G 5 HOH AAA 114 714 674 HOH HOH . G 5 HOH AAA 115 715 756 HOH HOH . G 5 HOH AAA 116 716 744 HOH HOH . G 5 HOH AAA 117 717 623 HOH HOH . G 5 HOH AAA 118 718 641 HOH HOH . G 5 HOH AAA 119 719 720 HOH HOH . G 5 HOH AAA 120 720 657 HOH HOH . G 5 HOH AAA 121 721 685 HOH HOH . G 5 HOH AAA 122 722 703 HOH HOH . G 5 HOH AAA 123 723 688 HOH HOH . G 5 HOH AAA 124 724 727 HOH HOH . G 5 HOH AAA 125 725 662 HOH HOH . G 5 HOH AAA 126 726 609 HOH HOH . G 5 HOH AAA 127 727 719 HOH HOH . G 5 HOH AAA 128 728 701 HOH HOH . G 5 HOH AAA 129 729 620 HOH HOH . G 5 HOH AAA 130 730 601 HOH HOH . G 5 HOH AAA 131 731 604 HOH HOH . G 5 HOH AAA 132 732 629 HOH HOH . G 5 HOH AAA 133 733 728 HOH HOH . G 5 HOH AAA 134 734 611 HOH HOH . G 5 HOH AAA 135 735 746 HOH HOH . G 5 HOH AAA 136 736 607 HOH HOH . G 5 HOH AAA 137 737 697 HOH HOH . G 5 HOH AAA 138 738 642 HOH HOH . G 5 HOH AAA 139 739 603 HOH HOH . G 5 HOH AAA 140 740 710 HOH HOH . G 5 HOH AAA 141 741 753 HOH HOH . G 5 HOH AAA 142 742 638 HOH HOH . G 5 HOH AAA 143 743 708 HOH HOH . G 5 HOH AAA 144 744 658 HOH HOH . G 5 HOH AAA 145 745 680 HOH HOH . G 5 HOH AAA 146 746 700 HOH HOH . G 5 HOH AAA 147 747 659 HOH HOH . G 5 HOH AAA 148 748 739 HOH HOH . G 5 HOH AAA 149 749 712 HOH HOH . G 5 HOH AAA 150 750 735 HOH HOH . G 5 HOH AAA 151 751 692 HOH HOH . G 5 HOH AAA 152 752 678 HOH HOH . G 5 HOH AAA 153 753 668 HOH HOH . G 5 HOH AAA 154 754 717 HOH HOH . G 5 HOH AAA 155 755 733 HOH HOH . G 5 HOH AAA 156 756 632 HOH HOH . G 5 HOH AAA 157 757 679 HOH HOH . G 5 HOH AAA 158 758 691 HOH HOH . G 5 HOH AAA 159 759 690 HOH HOH . G 5 HOH AAA 160 760 709 HOH HOH . G 5 HOH AAA 161 761 714 HOH HOH . G 5 HOH AAA 162 762 665 HOH HOH . G 5 HOH AAA 163 763 711 HOH HOH . G 5 HOH AAA 164 764 705 HOH HOH . G 5 HOH AAA 165 765 713 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . B 2 51.584 21.549 -9.434 1 40.64 ? N1 EPE 501 AAA 1 HETATM 2 C C2 EPE . . . B 2 50.979 20.207 -9.37 1 40.42 ? C2 EPE 501 AAA 1 HETATM 3 C C3 EPE . . . B 2 49.539 20.243 -8.892 1 40.79 ? C3 EPE 501 AAA 1 HETATM 4 N N4 EPE . . . B 2 49.519 20.706 -7.478 1 41.85 ? N4 EPE 501 AAA 1 HETATM 5 C C5 EPE . . . B 2 50.444 21.842 -7.221 1 40.34 ? C5 EPE 501 AAA 1 HETATM 6 C C6 EPE . . . B 2 50.989 22.507 -8.475 1 39.3 ? C6 EPE 501 AAA 1 HETATM 7 C C7 EPE . . . B 2 48.195 21.004 -6.904 1 41.72 ? C7 EPE 501 AAA 1 HETATM 8 C C8 EPE . . . B 2 47.164 19.895 -7.04 1 40.72 ? C8 EPE 501 AAA 1 HETATM 9 O O8 EPE . . . B 2 46.277 20.186 -8.108 1 37.67 ? O8 EPE 501 AAA 1 HETATM 10 C C9 EPE . . . B 2 53.053 21.483 -9.32 1 40.9 ? C9 EPE 501 AAA 1 HETATM 11 C C10 EPE . . . B 2 53.612 22.675 -10.076 1 43.26 ? C10 EPE 501 AAA 1 HETATM 12 S S EPE . . . B 2 55.08 22.498 -10.844 1 43.11 ? S EPE 501 AAA 1 HETATM 13 O O1S EPE . . . B 2 54.837 22.973 -12.235 1 43.1 ? O1S EPE 501 AAA 1 HETATM 14 O O2S EPE . . . B 2 55.613 21.107 -10.882 1 39.46 ? O2S EPE 501 AAA 1 HETATM 15 O O3S EPE . . . B 2 56.023 23.381 -10.136 1 39.98 ? O3S EPE 501 AAA 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 15 #