data_6ZDK # _model_server_result.job_id HQ4WpeRt_omasyjtJMdpMg _model_server_result.datetime_utc '2024-11-06 00:53:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zdk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 6ZDK # _exptl.entry_id 6ZDK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 1614.626 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-tungstotellurate(VI) _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZDK _cell.length_a 128.968 _cell.length_b 128.968 _cell.length_c 48.791 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZDK _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NZ LYS 57 AAA LYS 137 1_555 E W4 TEW . AAA TEW 504 4_655 ? ? ? ? B ? ? ? ? ? ? ? 3.29 ? metalc ? metalc2 A OE1 GLU 77 AAA GLU 157 1_555 C MG MG . AAA MG 502 5_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc3 C MG MG . AAA MG 502 1_555 G O HOH . AAA HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc4 C MG MG . AAA MG 502 1_555 G O HOH . AAA HOH 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc5 C MG MG . AAA MG 502 1_555 G O HOH . AAA HOH 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc6 C MG MG . AAA MG 502 1_555 G O HOH . AAA HOH 653 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc7 C MG MG . AAA MG 502 1_555 G O HOH . AAA HOH 694 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? # _chem_comp.formula 'O24 Te W6 -6' _chem_comp.formula_weight 1614.626 _chem_comp.id TEW _chem_comp.mon_nstd_flag . _chem_comp.name 6-tungstotellurate(VI) _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 TE1 TEW sing 323 n n O1 W1 TEW sing 324 n n O1 W2 TEW sing 325 n n O2 TE1 TEW sing 326 n n O2 W1 TEW sing 327 n n O2 W3 TEW sing 328 n n O3 W1 TEW sing 329 n n O3 W2 TEW sing 330 n n O4 W1 TEW sing 331 n n O4 W3 TEW sing 332 n n O5 W1 TEW sing 333 n n O6 W1 TEW doub 334 n n O7 TE1 TEW sing 335 n n O7 W2 TEW sing 336 n n O7 W4 TEW sing 337 n n O8 W2 TEW doub 338 n n O9 W2 TEW sing 339 n n O10 W2 TEW sing 340 n n O10 W4 TEW sing 341 n n O11 TE1 TEW sing 342 n n O11 W5 TEW sing 343 n n O11 W6 TEW sing 344 n n O12 TE1 TEW sing 345 n n O12 W4 TEW sing 346 n n O12 W5 TEW sing 347 n n O13 TE1 TEW sing 348 n n O13 W3 TEW sing 349 n n O13 W6 TEW sing 350 n n O14 W3 TEW sing 351 n n O14 W6 TEW sing 352 n n O15 W3 TEW doub 353 n n O16 W3 TEW sing 354 n n O17 W4 TEW sing 355 n n O17 W5 TEW sing 356 n n O18 W4 TEW doub 357 n n O19 W4 TEW sing 358 n n O20 W5 TEW sing 359 n n O20 W6 TEW sing 360 n n O21 W5 TEW doub 361 n n O22 W5 TEW sing 362 n n O23 W6 TEW doub 363 n n O31 W6 TEW sing 364 n n # _atom_sites.entry_id 6ZDK _atom_sites.fract_transf_matrix[1][1] 0.007754 _atom_sites.fract_transf_matrix[1][2] 0.004477 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008953 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020496 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EPE AAA 1 501 501 EPE EPE . C 3 MG AAA 1 502 502 MG MG . D 4 TEW AAA 1 503 503 TEW TEW . E 4 TEW AAA 1 504 504 TEW TEW . F 4 TEW AAA 1 505 505 TEW TEW . G 5 HOH AAA 1 601 760 HOH HOH . G 5 HOH AAA 2 602 765 HOH HOH . G 5 HOH AAA 3 603 656 HOH HOH . G 5 HOH AAA 4 604 702 HOH HOH . G 5 HOH AAA 5 605 671 HOH HOH . G 5 HOH AAA 6 606 716 HOH HOH . G 5 HOH AAA 7 607 646 HOH HOH . G 5 HOH AAA 8 608 655 HOH HOH . G 5 HOH AAA 9 609 651 HOH HOH . G 5 HOH AAA 10 610 738 HOH HOH . G 5 HOH AAA 11 611 648 HOH HOH . G 5 HOH AAA 12 612 677 HOH HOH . G 5 HOH AAA 13 613 762 HOH HOH . G 5 HOH AAA 14 614 718 HOH HOH . G 5 HOH AAA 15 615 619 HOH HOH . G 5 HOH AAA 16 616 681 HOH HOH . G 5 HOH AAA 17 617 694 HOH HOH . G 5 HOH AAA 18 618 622 HOH HOH . G 5 HOH AAA 19 619 707 HOH HOH . G 5 HOH AAA 20 620 763 HOH HOH . G 5 HOH AAA 21 621 621 HOH HOH . G 5 HOH AAA 22 622 755 HOH HOH . G 5 HOH AAA 23 623 652 HOH HOH . G 5 HOH AAA 24 624 633 HOH HOH . G 5 HOH AAA 25 625 654 HOH HOH . G 5 HOH AAA 26 626 695 HOH HOH . G 5 HOH AAA 27 627 670 HOH HOH . G 5 HOH AAA 28 628 639 HOH HOH . G 5 HOH AAA 29 629 747 HOH HOH . G 5 HOH AAA 30 630 666 HOH HOH . G 5 HOH AAA 31 631 758 HOH HOH . G 5 HOH AAA 32 632 741 HOH HOH . G 5 HOH AAA 33 633 730 HOH HOH . G 5 HOH AAA 34 634 614 HOH HOH . G 5 HOH AAA 35 635 640 HOH HOH . G 5 HOH AAA 36 636 615 HOH HOH . G 5 HOH AAA 37 637 647 HOH HOH . G 5 HOH AAA 38 638 721 HOH HOH . G 5 HOH AAA 39 639 664 HOH HOH . G 5 HOH AAA 40 640 683 HOH HOH . G 5 HOH AAA 41 641 627 HOH HOH . G 5 HOH AAA 42 642 732 HOH HOH . G 5 HOH AAA 43 643 684 HOH HOH . G 5 HOH AAA 44 644 653 HOH HOH . G 5 HOH AAA 45 645 650 HOH HOH . G 5 HOH AAA 46 646 645 HOH HOH . G 5 HOH AAA 47 647 706 HOH HOH . G 5 HOH AAA 48 648 750 HOH HOH . G 5 HOH AAA 49 649 734 HOH HOH . G 5 HOH AAA 50 650 634 HOH HOH . G 5 HOH AAA 51 651 759 HOH HOH . G 5 HOH AAA 52 652 673 HOH HOH . G 5 HOH AAA 53 653 761 HOH HOH . G 5 HOH AAA 54 654 726 HOH HOH . G 5 HOH AAA 55 655 737 HOH HOH . G 5 HOH AAA 56 656 754 HOH HOH . G 5 HOH AAA 57 657 742 HOH HOH . G 5 HOH AAA 58 658 649 HOH HOH . G 5 HOH AAA 59 659 729 HOH HOH . G 5 HOH AAA 60 660 612 HOH HOH . G 5 HOH AAA 61 661 723 HOH HOH . G 5 HOH AAA 62 662 605 HOH HOH . G 5 HOH AAA 63 663 663 HOH HOH . G 5 HOH AAA 64 664 672 HOH HOH . G 5 HOH AAA 65 665 715 HOH HOH . G 5 HOH AAA 66 666 617 HOH HOH . G 5 HOH AAA 67 667 637 HOH HOH . G 5 HOH AAA 68 668 625 HOH HOH . G 5 HOH AAA 69 669 616 HOH HOH . G 5 HOH AAA 70 670 745 HOH HOH . G 5 HOH AAA 71 671 669 HOH HOH . G 5 HOH AAA 72 672 749 HOH HOH . G 5 HOH AAA 73 673 606 HOH HOH . G 5 HOH AAA 74 674 630 HOH HOH . G 5 HOH AAA 75 675 724 HOH HOH . G 5 HOH AAA 76 676 613 HOH HOH . G 5 HOH AAA 77 677 740 HOH HOH . G 5 HOH AAA 78 678 725 HOH HOH . G 5 HOH AAA 79 679 696 HOH HOH . G 5 HOH AAA 80 680 687 HOH HOH . G 5 HOH AAA 81 681 661 HOH HOH . G 5 HOH AAA 82 682 628 HOH HOH . G 5 HOH AAA 83 683 631 HOH HOH . G 5 HOH AAA 84 684 624 HOH HOH . G 5 HOH AAA 85 685 602 HOH HOH . G 5 HOH AAA 86 686 682 HOH HOH . G 5 HOH AAA 87 687 751 HOH HOH . G 5 HOH AAA 88 688 748 HOH HOH . G 5 HOH AAA 89 689 699 HOH HOH . G 5 HOH AAA 90 690 676 HOH HOH . G 5 HOH AAA 91 691 636 HOH HOH . G 5 HOH AAA 92 692 618 HOH HOH . G 5 HOH AAA 93 693 608 HOH HOH . G 5 HOH AAA 94 694 764 HOH HOH . G 5 HOH AAA 95 695 698 HOH HOH . G 5 HOH AAA 96 696 644 HOH HOH . G 5 HOH AAA 97 697 722 HOH HOH . G 5 HOH AAA 98 698 626 HOH HOH . G 5 HOH AAA 99 699 752 HOH HOH . G 5 HOH AAA 100 700 757 HOH HOH . G 5 HOH AAA 101 701 704 HOH HOH . G 5 HOH AAA 102 702 686 HOH HOH . G 5 HOH AAA 103 703 643 HOH HOH . G 5 HOH AAA 104 704 693 HOH HOH . G 5 HOH AAA 105 705 689 HOH HOH . G 5 HOH AAA 106 706 731 HOH HOH . G 5 HOH AAA 107 707 660 HOH HOH . G 5 HOH AAA 108 708 635 HOH HOH . G 5 HOH AAA 109 709 743 HOH HOH . G 5 HOH AAA 110 710 610 HOH HOH . G 5 HOH AAA 111 711 667 HOH HOH . G 5 HOH AAA 112 712 736 HOH HOH . G 5 HOH AAA 113 713 675 HOH HOH . G 5 HOH AAA 114 714 674 HOH HOH . G 5 HOH AAA 115 715 756 HOH HOH . G 5 HOH AAA 116 716 744 HOH HOH . G 5 HOH AAA 117 717 623 HOH HOH . G 5 HOH AAA 118 718 641 HOH HOH . G 5 HOH AAA 119 719 720 HOH HOH . G 5 HOH AAA 120 720 657 HOH HOH . G 5 HOH AAA 121 721 685 HOH HOH . G 5 HOH AAA 122 722 703 HOH HOH . G 5 HOH AAA 123 723 688 HOH HOH . G 5 HOH AAA 124 724 727 HOH HOH . G 5 HOH AAA 125 725 662 HOH HOH . G 5 HOH AAA 126 726 609 HOH HOH . G 5 HOH AAA 127 727 719 HOH HOH . G 5 HOH AAA 128 728 701 HOH HOH . G 5 HOH AAA 129 729 620 HOH HOH . G 5 HOH AAA 130 730 601 HOH HOH . G 5 HOH AAA 131 731 604 HOH HOH . G 5 HOH AAA 132 732 629 HOH HOH . G 5 HOH AAA 133 733 728 HOH HOH . G 5 HOH AAA 134 734 611 HOH HOH . G 5 HOH AAA 135 735 746 HOH HOH . G 5 HOH AAA 136 736 607 HOH HOH . G 5 HOH AAA 137 737 697 HOH HOH . G 5 HOH AAA 138 738 642 HOH HOH . G 5 HOH AAA 139 739 603 HOH HOH . G 5 HOH AAA 140 740 710 HOH HOH . G 5 HOH AAA 141 741 753 HOH HOH . G 5 HOH AAA 142 742 638 HOH HOH . G 5 HOH AAA 143 743 708 HOH HOH . G 5 HOH AAA 144 744 658 HOH HOH . G 5 HOH AAA 145 745 680 HOH HOH . G 5 HOH AAA 146 746 700 HOH HOH . G 5 HOH AAA 147 747 659 HOH HOH . G 5 HOH AAA 148 748 739 HOH HOH . G 5 HOH AAA 149 749 712 HOH HOH . G 5 HOH AAA 150 750 735 HOH HOH . G 5 HOH AAA 151 751 692 HOH HOH . G 5 HOH AAA 152 752 678 HOH HOH . G 5 HOH AAA 153 753 668 HOH HOH . G 5 HOH AAA 154 754 717 HOH HOH . G 5 HOH AAA 155 755 733 HOH HOH . G 5 HOH AAA 156 756 632 HOH HOH . G 5 HOH AAA 157 757 679 HOH HOH . G 5 HOH AAA 158 758 691 HOH HOH . G 5 HOH AAA 159 759 690 HOH HOH . G 5 HOH AAA 160 760 709 HOH HOH . G 5 HOH AAA 161 761 714 HOH HOH . G 5 HOH AAA 162 762 665 HOH HOH . G 5 HOH AAA 163 763 711 HOH HOH . G 5 HOH AAA 164 764 705 HOH HOH . G 5 HOH AAA 165 765 713 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 TEW . . . D 4 20.842 28.471 0.696 0.9 37.74 ? O1 TEW 503 AAA 1 HETATM 2 O O2 TEW . . . D 4 18.462 28.614 -0.159 0.9 37.46 ? O2 TEW 503 AAA 1 HETATM 3 O O3 TEW . . . D 4 20.567 27.629 -1.736 0.9 38.33 ? O3 TEW 503 AAA 1 HETATM 4 O O4 TEW . . . D 4 19.728 30.947 0.069 0.9 43.72 ? O4 TEW 503 AAA 1 HETATM 5 O O5 TEW . . . D 4 19.581 29.996 -2.677 0.9 31.51 ? O5 TEW 503 AAA 1 HETATM 6 O O6 TEW . . . D 4 21.894 30.111 -1.324 0.9 42.04 ? O6 TEW 503 AAA 1 HETATM 7 O O7 TEW . . . D 4 19.672 26.056 0.53 0.9 43.17 ? O7 TEW 503 AAA 1 HETATM 8 O O8 TEW . . . D 4 23.07 27.605 -0.867 0.9 41.88 ? O8 TEW 503 AAA 1 HETATM 9 O O9 TEW . . . D 4 21.652 25.121 -1.309 0.9 49.17 ? O9 TEW 503 AAA 1 HETATM 10 O O10 TEW . . . D 4 22.12 26.083 1.316 0.9 35.85 ? O10 TEW 503 AAA 1 HETATM 11 O O11 TEW . . . D 4 17.485 27.24 2.168 0.9 40.43 ? O11 TEW 503 AAA 1 HETATM 12 O O12 TEW . . . D 4 19.914 27.075 2.987 0.9 38.09 ? O12 TEW 503 AAA 1 HETATM 13 O O13 TEW . . . D 4 18.925 29.478 2.33 0.9 39.91 ? O13 TEW 503 AAA 1 HETATM 14 O O14 TEW . . . D 4 16.542 29.643 1.637 0.9 34.8 ? O14 TEW 503 AAA 1 HETATM 15 O O15 TEW . . . D 4 17.324 31.19 -0.77 0.9 25.87 ? O15 TEW 503 AAA 1 HETATM 16 O O16 TEW . . . D 4 18.02 32.094 1.858 0.9 43.25 ? O16 TEW 503 AAA 1 HETATM 17 O O17 TEW . . . D 4 18.853 24.776 2.79 0.9 47.19 ? O17 TEW 503 AAA 1 HETATM 18 O O18 TEW . . . D 4 21.324 24.824 3.82 0.9 28.45 ? O18 TEW 503 AAA 1 HETATM 19 O O19 TEW . . . D 4 20.743 23.491 1.359 0.9 50.18 ? O19 TEW 503 AAA 1 HETATM 20 O O20 TEW . . . D 4 17.773 27.991 4.721 0.9 39.51 ? O20 TEW 503 AAA 1 HETATM 21 O O21 TEW . . . D 4 18.899 25.828 5.517 0.9 29.26 ? O21 TEW 503 AAA 1 HETATM 22 O O22 TEW . . . D 4 16.531 25.408 4.149 0.9 44.41 ? O22 TEW 503 AAA 1 HETATM 23 O O23 TEW . . . D 4 15.321 28.583 3.777 0.9 48.41 ? O23 TEW 503 AAA 1 HETATM 24 O O31 TEW . . . D 4 17.211 30.6 4.295 0.9 51.05 ? O31 TEW 503 AAA 1 HETATM 25 TE TE1 TEW . . . D 4 19.175 27.761 1.382 0.9 40.36 ? TE1 TEW 503 AAA 1 HETATM 26 W W1 TEW . . . D 4 20.249 29.517 -1.183 0.9 38.02 ? W1 TEW 503 AAA 1 HETATM 27 W W2 TEW . . . D 4 21.673 26.651 -0.456 0.9 43.09 ? W2 TEW 503 AAA 1 HETATM 28 W W3 TEW . . . D 4 17.915 30.706 0.794 0.9 37.67 ? W3 TEW 503 AAA 1 HETATM 29 W W4 TEW . . . D 4 20.712 25.014 2.185 0.9 48.11 ? W4 TEW 503 AAA 1 HETATM 30 W W5 TEW . . . D 4 18.114 26.15 4.013 0.9 43.45 ? W5 TEW 503 AAA 1 HETATM 31 W W6 TEW . . . D 4 16.926 29.134 3.418 0.9 39.23 ? W6 TEW 503 AAA 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 31 #