data_6ZDL # _model_server_result.job_id '_bNMMpL3buXKF5Rt7CywbQ' _model_server_result.datetime_utc '2024-11-06 00:14:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zdl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 6ZDL # _exptl.entry_id 6ZDL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 1614.626 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-tungstotellurate(VI) _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZDL _cell.length_a 127.864 _cell.length_b 127.864 _cell.length_c 48.809 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZDL _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G O3 IFM . AAA IFM 506 1_555 H C1 GLC . AAA GLC 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? metalc ? metalc1 A OE1 GLU 77 AAA GLU 157 1_555 C MG MG . AAA MG 502 5_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc2 A OG1 THR 176 AAA THR 256 1_555 D W1 TEW . AAA TEW 503 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc3 C MG MG . AAA MG 502 1_555 I O HOH . AAA HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc4 C MG MG . AAA MG 502 1_555 I O HOH . AAA HOH 645 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc5 C MG MG . AAA MG 502 1_555 I O HOH . AAA HOH 652 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc6 C MG MG . AAA MG 502 1_555 I O HOH . AAA HOH 684 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc7 C MG MG . AAA MG 502 1_555 I O HOH . AAA HOH 689 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? # _chem_comp.formula 'O24 Te W6 -6' _chem_comp.formula_weight 1614.626 _chem_comp.id TEW _chem_comp.mon_nstd_flag . _chem_comp.name 6-tungstotellurate(VI) _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 TE1 TEW sing 370 n n O1 W1 TEW sing 371 n n O1 W2 TEW sing 372 n n O2 TE1 TEW sing 373 n n O2 W1 TEW sing 374 n n O2 W3 TEW sing 375 n n O3 W1 TEW sing 376 n n O3 W2 TEW sing 377 n n O4 W1 TEW sing 378 n n O4 W3 TEW sing 379 n n O5 W1 TEW sing 380 n n O6 W1 TEW doub 381 n n O7 TE1 TEW sing 382 n n O7 W2 TEW sing 383 n n O7 W4 TEW sing 384 n n O8 W2 TEW doub 385 n n O9 W2 TEW sing 386 n n O10 W2 TEW sing 387 n n O10 W4 TEW sing 388 n n O11 TE1 TEW sing 389 n n O11 W5 TEW sing 390 n n O11 W6 TEW sing 391 n n O12 TE1 TEW sing 392 n n O12 W4 TEW sing 393 n n O12 W5 TEW sing 394 n n O13 TE1 TEW sing 395 n n O13 W3 TEW sing 396 n n O13 W6 TEW sing 397 n n O14 W3 TEW sing 398 n n O14 W6 TEW sing 399 n n O15 W3 TEW doub 400 n n O16 W3 TEW sing 401 n n O17 W4 TEW sing 402 n n O17 W5 TEW sing 403 n n O18 W4 TEW doub 404 n n O19 W4 TEW sing 405 n n O20 W5 TEW sing 406 n n O20 W6 TEW sing 407 n n O21 W5 TEW doub 408 n n O22 W5 TEW sing 409 n n O23 W6 TEW doub 410 n n O31 W6 TEW sing 411 n n # _atom_sites.entry_id 6ZDL _atom_sites.fract_transf_matrix[1][1] 0.007821 _atom_sites.fract_transf_matrix[1][2] 0.004515 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009031 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EPE AAA 1 501 501 EPE EPE . C 3 MG AAA 1 502 502 MG MG . D 4 TEW AAA 1 503 503 TEW TEW . E 4 TEW AAA 1 504 504 TEW TEW . F 4 TEW AAA 1 505 505 TEW TEW . G 5 IFM AAA 1 506 507 IFM IFM . H 6 GLC AAA 1 507 506 GLC GLC . I 7 HOH AAA 1 601 702 HOH HOH . I 7 HOH AAA 2 602 687 HOH HOH . I 7 HOH AAA 3 603 675 HOH HOH . I 7 HOH AAA 4 604 609 HOH HOH . I 7 HOH AAA 5 605 656 HOH HOH . I 7 HOH AAA 6 606 672 HOH HOH . I 7 HOH AAA 7 607 652 HOH HOH . I 7 HOH AAA 8 608 682 HOH HOH . I 7 HOH AAA 9 609 677 HOH HOH . I 7 HOH AAA 10 610 713 HOH HOH . I 7 HOH AAA 11 611 623 HOH HOH . I 7 HOH AAA 12 612 618 HOH HOH . I 7 HOH AAA 13 613 628 HOH HOH . I 7 HOH AAA 14 614 657 HOH HOH . I 7 HOH AAA 15 615 621 HOH HOH . I 7 HOH AAA 16 616 668 HOH HOH . I 7 HOH AAA 17 617 705 HOH HOH . I 7 HOH AAA 18 618 632 HOH HOH . I 7 HOH AAA 19 619 651 HOH HOH . I 7 HOH AAA 20 620 685 HOH HOH . I 7 HOH AAA 21 621 640 HOH HOH . I 7 HOH AAA 22 622 634 HOH HOH . I 7 HOH AAA 23 623 671 HOH HOH . I 7 HOH AAA 24 624 700 HOH HOH . I 7 HOH AAA 25 625 631 HOH HOH . I 7 HOH AAA 26 626 642 HOH HOH . I 7 HOH AAA 27 627 649 HOH HOH . I 7 HOH AAA 28 628 680 HOH HOH . I 7 HOH AAA 29 629 611 HOH HOH . I 7 HOH AAA 30 630 678 HOH HOH . I 7 HOH AAA 31 631 619 HOH HOH . I 7 HOH AAA 32 632 699 HOH HOH . I 7 HOH AAA 33 633 627 HOH HOH . I 7 HOH AAA 34 634 708 HOH HOH . I 7 HOH AAA 35 635 679 HOH HOH . I 7 HOH AAA 36 636 701 HOH HOH . I 7 HOH AAA 37 637 638 HOH HOH . I 7 HOH AAA 38 638 604 HOH HOH . I 7 HOH AAA 39 639 704 HOH HOH . I 7 HOH AAA 40 640 641 HOH HOH . I 7 HOH AAA 41 641 683 HOH HOH . I 7 HOH AAA 42 642 660 HOH HOH . I 7 HOH AAA 43 643 643 HOH HOH . I 7 HOH AAA 44 644 616 HOH HOH . I 7 HOH AAA 45 645 688 HOH HOH . I 7 HOH AAA 46 646 674 HOH HOH . I 7 HOH AAA 47 647 698 HOH HOH . I 7 HOH AAA 48 648 639 HOH HOH . I 7 HOH AAA 49 649 691 HOH HOH . I 7 HOH AAA 50 650 605 HOH HOH . I 7 HOH AAA 51 651 673 HOH HOH . I 7 HOH AAA 52 652 690 HOH HOH . I 7 HOH AAA 53 653 625 HOH HOH . I 7 HOH AAA 54 654 614 HOH HOH . I 7 HOH AAA 55 655 633 HOH HOH . I 7 HOH AAA 56 656 710 HOH HOH . I 7 HOH AAA 57 657 697 HOH HOH . I 7 HOH AAA 58 658 622 HOH HOH . I 7 HOH AAA 59 659 711 HOH HOH . I 7 HOH AAA 60 660 644 HOH HOH . I 7 HOH AAA 61 661 694 HOH HOH . I 7 HOH AAA 62 662 646 HOH HOH . I 7 HOH AAA 63 663 709 HOH HOH . I 7 HOH AAA 64 664 620 HOH HOH . I 7 HOH AAA 65 665 647 HOH HOH . I 7 HOH AAA 66 666 696 HOH HOH . I 7 HOH AAA 67 667 684 HOH HOH . I 7 HOH AAA 68 668 606 HOH HOH . I 7 HOH AAA 69 669 629 HOH HOH . I 7 HOH AAA 70 670 648 HOH HOH . I 7 HOH AAA 71 671 666 HOH HOH . I 7 HOH AAA 72 672 607 HOH HOH . I 7 HOH AAA 73 673 624 HOH HOH . I 7 HOH AAA 74 674 664 HOH HOH . I 7 HOH AAA 75 675 610 HOH HOH . I 7 HOH AAA 76 676 630 HOH HOH . I 7 HOH AAA 77 677 707 HOH HOH . I 7 HOH AAA 78 678 613 HOH HOH . I 7 HOH AAA 79 679 661 HOH HOH . I 7 HOH AAA 80 680 681 HOH HOH . I 7 HOH AAA 81 681 692 HOH HOH . I 7 HOH AAA 82 682 650 HOH HOH . I 7 HOH AAA 83 683 667 HOH HOH . I 7 HOH AAA 84 684 686 HOH HOH . I 7 HOH AAA 85 685 669 HOH HOH . I 7 HOH AAA 86 686 662 HOH HOH . I 7 HOH AAA 87 687 676 HOH HOH . I 7 HOH AAA 88 688 693 HOH HOH . I 7 HOH AAA 89 689 689 HOH HOH . I 7 HOH AAA 90 690 695 HOH HOH . I 7 HOH AAA 91 691 712 HOH HOH . I 7 HOH AAA 92 692 608 HOH HOH . I 7 HOH AAA 93 693 665 HOH HOH . I 7 HOH AAA 94 694 617 HOH HOH . I 7 HOH AAA 95 695 636 HOH HOH . I 7 HOH AAA 96 696 615 HOH HOH . I 7 HOH AAA 97 697 706 HOH HOH . I 7 HOH AAA 98 698 612 HOH HOH . I 7 HOH AAA 99 699 654 HOH HOH . I 7 HOH AAA 100 700 626 HOH HOH . I 7 HOH AAA 101 701 645 HOH HOH . I 7 HOH AAA 102 702 637 HOH HOH . I 7 HOH AAA 103 703 703 HOH HOH . I 7 HOH AAA 104 704 655 HOH HOH . I 7 HOH AAA 105 705 635 HOH HOH . I 7 HOH AAA 106 706 602 HOH HOH . I 7 HOH AAA 107 707 603 HOH HOH . I 7 HOH AAA 108 708 601 HOH HOH . I 7 HOH AAA 109 709 659 HOH HOH . I 7 HOH AAA 110 710 670 HOH HOH . I 7 HOH AAA 111 711 653 HOH HOH . I 7 HOH AAA 112 712 658 HOH HOH . I 7 HOH AAA 113 713 663 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 TEW . . . D 4 18.188 28.251 0.085 1 35.07 ? O1 TEW 503 AAA 1 HETATM 2 O O2 TEW . . . D 4 20.664 28.038 0.779 1 36.84 ? O2 TEW 503 AAA 1 HETATM 3 O O3 TEW . . . D 4 19.551 30.481 0.334 1 40.17 ? O3 TEW 503 AAA 1 HETATM 4 O O4 TEW . . . D 4 20.257 27.284 -1.664 1 36.08 ? O4 TEW 503 AAA 1 HETATM 5 O O5 TEW . . . D 4 21.484 29.789 -1.397 1 39.99 ? O5 TEW 503 AAA 1 HETATM 6 O O6 TEW . . . D 4 19.032 29.774 -2.314 1 30.35 ? O6 TEW 503 AAA 1 HETATM 7 O O7 TEW . . . D 4 18.694 29.028 2.583 1 38.42 ? O7 TEW 503 AAA 1 HETATM 8 O O8 TEW . . . D 4 17.029 30.928 -0.378 1 27.32 ? O8 TEW 503 AAA 1 HETATM 9 O O9 TEW . . . D 4 17.942 31.716 2.061 1 41.56 ? O9 TEW 503 AAA 1 HETATM 10 O O10 TEW . . . D 4 16.298 29.39 1.928 1 33.81 ? O10 TEW 503 AAA 1 HETATM 11 O O11 TEW . . . D 4 19.806 26.507 2.995 1 34.81 ? O11 TEW 503 AAA 1 HETATM 12 O O12 TEW . . . D 4 17.338 26.749 2.256 1 36.52 ? O12 TEW 503 AAA 1 HETATM 13 O O13 TEW . . . D 4 19.357 25.738 0.511 1 40.13 ? O13 TEW 503 AAA 1 HETATM 14 O O14 TEW . . . D 4 21.718 25.42 1.186 1 33.29 ? O14 TEW 503 AAA 1 HETATM 15 O O15 TEW . . . D 4 22.846 26.951 -0.834 1 39.2 ? O15 TEW 503 AAA 1 HETATM 16 O O16 TEW . . . D 4 21.2 24.756 -1.453 1 47.2 ? O16 TEW 503 AAA 1 HETATM 17 O O17 TEW . . . D 4 17.585 27.396 4.701 1 33.5 ? O17 TEW 503 AAA 1 HETATM 18 O O18 TEW . . . D 4 15.078 27.939 3.74 1 47.02 ? O18 TEW 503 AAA 1 HETATM 19 O O19 TEW . . . D 4 16.789 29.963 4.611 1 49.64 ? O19 TEW 503 AAA 1 HETATM 20 O O20 TEW . . . D 4 18.493 24.227 2.704 1 44.48 ? O20 TEW 503 AAA 1 HETATM 21 O O21 TEW . . . D 4 16.249 24.961 4.091 1 42.82 ? O21 TEW 503 AAA 1 HETATM 22 O O22 TEW . . . D 4 18.766 25.011 5.309 1 30.57 ? O22 TEW 503 AAA 1 HETATM 23 O O23 TEW . . . D 4 21.181 23.981 3.487 1 34.13 ? O23 TEW 503 AAA 1 HETATM 24 O O31 TEW . . . D 4 20.124 23.033 1.071 1 45.75 ? O31 TEW 503 AAA 1 HETATM 25 TE TE1 TEW . . . D 4 19.026 27.385 1.537 1 38.51 ? TE1 TEW 503 AAA 1 HETATM 26 W W1 TEW . . . D 4 19.91 29.128 -1.018 1 35.32 ? W1 TEW 503 AAA 1 HETATM 27 W W2 TEW . . . D 4 17.702 30.306 1.018 1 36.19 ? W2 TEW 503 AAA 1 HETATM 28 W W3 TEW . . . D 4 21.309 26.204 -0.5 1 38.7 ? W3 TEW 503 AAA 1 HETATM 29 W W4 TEW . . . D 4 16.71 28.587 3.56 1 38.44 ? W4 TEW 503 AAA 1 HETATM 30 W W5 TEW . . . D 4 17.887 25.567 3.974 1 42.32 ? W5 TEW 503 AAA 1 HETATM 31 W W6 TEW . . . D 4 20.335 24.44 2.091 1 43.92 ? W6 TEW 503 AAA 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 31 #