data_6ZDL # _model_server_result.job_id HgOdjGaTWdhrx9fz6DaOvw _model_server_result.datetime_utc '2024-11-23 11:04:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zdl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":507}' # _entry.id 6ZDL # _exptl.entry_id 6ZDL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZDL _cell.length_a 127.864 _cell.length_b 127.864 _cell.length_c 48.809 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZDL _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G O3 IFM . AAA IFM 506 1_555 H C1 GLC . AAA GLC 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? metalc ? metalc1 A OE1 GLU 77 AAA GLU 157 1_555 C MG MG . AAA MG 502 5_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc2 A OG1 THR 176 AAA THR 256 1_555 D W1 TEW . AAA TEW 503 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc3 C MG MG . AAA MG 502 1_555 I O HOH . AAA HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc4 C MG MG . AAA MG 502 1_555 I O HOH . AAA HOH 645 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc5 C MG MG . AAA MG 502 1_555 I O HOH . AAA HOH 652 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc6 C MG MG . AAA MG 502 1_555 I O HOH . AAA HOH 684 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc7 C MG MG . AAA MG 502 1_555 I O HOH . AAA HOH 689 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GLC _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GLC sing 116 n n C1 O1 GLC sing 117 n n C1 O5 GLC sing 118 n n C1 H1 GLC sing 119 n n C2 C3 GLC sing 120 n n C2 O2 GLC sing 121 n n C2 H2 GLC sing 122 n n C3 C4 GLC sing 123 n n C3 O3 GLC sing 124 n n C3 H3 GLC sing 125 n n C4 C5 GLC sing 126 n n C4 O4 GLC sing 127 n n C4 H4 GLC sing 128 n n C5 C6 GLC sing 129 n n C5 O5 GLC sing 130 n n C5 H5 GLC sing 131 n n C6 O6 GLC sing 132 n n C6 H61 GLC sing 133 n n C6 H62 GLC sing 134 n n O1 HO1 GLC sing 135 n n O2 HO2 GLC sing 136 n n O3 HO3 GLC sing 137 n n O4 HO4 GLC sing 138 n n O6 HO6 GLC sing 139 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GLC DGlcpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GLC a-D-glucopyranose 'COMMON NAME' GMML 1 GLC a-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GLC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6ZDL _atom_sites.fract_transf_matrix[1][1] 0.007821 _atom_sites.fract_transf_matrix[1][2] 0.004515 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009031 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EPE AAA 1 501 501 EPE EPE . C 3 MG AAA 1 502 502 MG MG . D 4 TEW AAA 1 503 503 TEW TEW . E 4 TEW AAA 1 504 504 TEW TEW . F 4 TEW AAA 1 505 505 TEW TEW . G 5 IFM AAA 1 506 507 IFM IFM . H 6 GLC AAA 1 507 506 GLC GLC . I 7 HOH AAA 1 601 702 HOH HOH . I 7 HOH AAA 2 602 687 HOH HOH . I 7 HOH AAA 3 603 675 HOH HOH . I 7 HOH AAA 4 604 609 HOH HOH . I 7 HOH AAA 5 605 656 HOH HOH . I 7 HOH AAA 6 606 672 HOH HOH . I 7 HOH AAA 7 607 652 HOH HOH . I 7 HOH AAA 8 608 682 HOH HOH . I 7 HOH AAA 9 609 677 HOH HOH . I 7 HOH AAA 10 610 713 HOH HOH . I 7 HOH AAA 11 611 623 HOH HOH . I 7 HOH AAA 12 612 618 HOH HOH . I 7 HOH AAA 13 613 628 HOH HOH . I 7 HOH AAA 14 614 657 HOH HOH . I 7 HOH AAA 15 615 621 HOH HOH . I 7 HOH AAA 16 616 668 HOH HOH . I 7 HOH AAA 17 617 705 HOH HOH . I 7 HOH AAA 18 618 632 HOH HOH . I 7 HOH AAA 19 619 651 HOH HOH . I 7 HOH AAA 20 620 685 HOH HOH . I 7 HOH AAA 21 621 640 HOH HOH . I 7 HOH AAA 22 622 634 HOH HOH . I 7 HOH AAA 23 623 671 HOH HOH . I 7 HOH AAA 24 624 700 HOH HOH . I 7 HOH AAA 25 625 631 HOH HOH . I 7 HOH AAA 26 626 642 HOH HOH . I 7 HOH AAA 27 627 649 HOH HOH . I 7 HOH AAA 28 628 680 HOH HOH . I 7 HOH AAA 29 629 611 HOH HOH . I 7 HOH AAA 30 630 678 HOH HOH . I 7 HOH AAA 31 631 619 HOH HOH . I 7 HOH AAA 32 632 699 HOH HOH . I 7 HOH AAA 33 633 627 HOH HOH . I 7 HOH AAA 34 634 708 HOH HOH . I 7 HOH AAA 35 635 679 HOH HOH . I 7 HOH AAA 36 636 701 HOH HOH . I 7 HOH AAA 37 637 638 HOH HOH . I 7 HOH AAA 38 638 604 HOH HOH . I 7 HOH AAA 39 639 704 HOH HOH . I 7 HOH AAA 40 640 641 HOH HOH . I 7 HOH AAA 41 641 683 HOH HOH . I 7 HOH AAA 42 642 660 HOH HOH . I 7 HOH AAA 43 643 643 HOH HOH . I 7 HOH AAA 44 644 616 HOH HOH . I 7 HOH AAA 45 645 688 HOH HOH . I 7 HOH AAA 46 646 674 HOH HOH . I 7 HOH AAA 47 647 698 HOH HOH . I 7 HOH AAA 48 648 639 HOH HOH . I 7 HOH AAA 49 649 691 HOH HOH . I 7 HOH AAA 50 650 605 HOH HOH . I 7 HOH AAA 51 651 673 HOH HOH . I 7 HOH AAA 52 652 690 HOH HOH . I 7 HOH AAA 53 653 625 HOH HOH . I 7 HOH AAA 54 654 614 HOH HOH . I 7 HOH AAA 55 655 633 HOH HOH . I 7 HOH AAA 56 656 710 HOH HOH . I 7 HOH AAA 57 657 697 HOH HOH . I 7 HOH AAA 58 658 622 HOH HOH . I 7 HOH AAA 59 659 711 HOH HOH . I 7 HOH AAA 60 660 644 HOH HOH . I 7 HOH AAA 61 661 694 HOH HOH . I 7 HOH AAA 62 662 646 HOH HOH . I 7 HOH AAA 63 663 709 HOH HOH . I 7 HOH AAA 64 664 620 HOH HOH . I 7 HOH AAA 65 665 647 HOH HOH . I 7 HOH AAA 66 666 696 HOH HOH . I 7 HOH AAA 67 667 684 HOH HOH . I 7 HOH AAA 68 668 606 HOH HOH . I 7 HOH AAA 69 669 629 HOH HOH . I 7 HOH AAA 70 670 648 HOH HOH . I 7 HOH AAA 71 671 666 HOH HOH . I 7 HOH AAA 72 672 607 HOH HOH . I 7 HOH AAA 73 673 624 HOH HOH . I 7 HOH AAA 74 674 664 HOH HOH . I 7 HOH AAA 75 675 610 HOH HOH . I 7 HOH AAA 76 676 630 HOH HOH . I 7 HOH AAA 77 677 707 HOH HOH . I 7 HOH AAA 78 678 613 HOH HOH . I 7 HOH AAA 79 679 661 HOH HOH . I 7 HOH AAA 80 680 681 HOH HOH . I 7 HOH AAA 81 681 692 HOH HOH . I 7 HOH AAA 82 682 650 HOH HOH . I 7 HOH AAA 83 683 667 HOH HOH . I 7 HOH AAA 84 684 686 HOH HOH . I 7 HOH AAA 85 685 669 HOH HOH . I 7 HOH AAA 86 686 662 HOH HOH . I 7 HOH AAA 87 687 676 HOH HOH . I 7 HOH AAA 88 688 693 HOH HOH . I 7 HOH AAA 89 689 689 HOH HOH . I 7 HOH AAA 90 690 695 HOH HOH . I 7 HOH AAA 91 691 712 HOH HOH . I 7 HOH AAA 92 692 608 HOH HOH . I 7 HOH AAA 93 693 665 HOH HOH . I 7 HOH AAA 94 694 617 HOH HOH . I 7 HOH AAA 95 695 636 HOH HOH . I 7 HOH AAA 96 696 615 HOH HOH . I 7 HOH AAA 97 697 706 HOH HOH . I 7 HOH AAA 98 698 612 HOH HOH . I 7 HOH AAA 99 699 654 HOH HOH . I 7 HOH AAA 100 700 626 HOH HOH . I 7 HOH AAA 101 701 645 HOH HOH . I 7 HOH AAA 102 702 637 HOH HOH . I 7 HOH AAA 103 703 703 HOH HOH . I 7 HOH AAA 104 704 655 HOH HOH . I 7 HOH AAA 105 705 635 HOH HOH . I 7 HOH AAA 106 706 602 HOH HOH . I 7 HOH AAA 107 707 603 HOH HOH . I 7 HOH AAA 108 708 601 HOH HOH . I 7 HOH AAA 109 709 659 HOH HOH . I 7 HOH AAA 110 710 670 HOH HOH . I 7 HOH AAA 111 711 653 HOH HOH . I 7 HOH AAA 112 712 658 HOH HOH . I 7 HOH AAA 113 713 663 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GLC . . . H 6 52.708 19.545 -8.341 1 23.67 ? C1 GLC 507 AAA 1 HETATM 2 C C2 GLC . . . H 6 53.447 20.052 -9.563 1 23.55 ? C2 GLC 507 AAA 1 HETATM 3 C C3 GLC . . . H 6 53.353 19.055 -10.695 1 22.87 ? C3 GLC 507 AAA 1 HETATM 4 C C4 GLC . . . H 6 53.847 17.689 -10.229 1 23.44 ? C4 GLC 507 AAA 1 HETATM 5 C C5 GLC . . . H 6 53.034 17.242 -9.03 1 23.76 ? C5 GLC 507 AAA 1 HETATM 6 C C6 GLC . . . H 6 53.537 15.907 -8.497 1 23.65 ? C6 GLC 507 AAA 1 HETATM 7 O O2 GLC . . . H 6 52.894 21.314 -9.926 1 25 ? O2 GLC 507 AAA 1 HETATM 8 O O3 GLC . . . H 6 54.176 19.51 -11.756 1 22.46 ? O3 GLC 507 AAA 1 HETATM 9 O O4 GLC . . . H 6 53.744 16.763 -11.297 1 22.06 ? O4 GLC 507 AAA 1 HETATM 10 O O5 GLC . . . H 6 53.19 18.245 -8.007 1 23.93 ? O5 GLC 507 AAA 1 HETATM 11 O O6 GLC . . . H 6 52.813 15.544 -7.316 1 23.59 ? O6 GLC 507 AAA 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #