data_6ZDM
#
_model_server_result.job_id            30wqyVw5330Xj5Mx5m_a-A 
_model_server_result.datetime_utc      '2024-11-24 13:05:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zdm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":604}' 
#
_entry.id    6ZDM 
#
_exptl.entry_id    6ZDM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.128 
_cell.angle_gamma         90 
_cell.entry_id            6ZDM 
_cell.length_a            44.974 
_cell.length_b            70.856 
_cell.length_c            78.455 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZDM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 F N N 
? 6 G N N 
? 6 H N N 
? 6 I N N 
? 6 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 283 AAA CYS 437 1_555 A SG CYS 388 AAA CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
covale ? covale1 A ND2 ASN 305 AAA ASN 459 1_555 C C1 NAG . AAA NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 403 n n 
S O2 SO4 doub 404 n n 
S O3 SO4 sing 405 n n 
S O4 SO4 sing 406 n n 
#
_atom_sites.entry_id                     6ZDM 
_atom_sites.fract_transf_matrix[1][1]    0.022235 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002781 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014113 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012845 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG AAA 1 601 545 NAG NAG . 
D 4 EDO AAA 1 602 701 EDO EDO . 
E 5 QG2 AAA 1 603 801 QG2 4MD . 
F 6 SO4 AAA 1 604 1 SO4 SO4 . 
G 6 SO4 AAA 1 605 3 SO4 SO4 . 
H 6 SO4 AAA 1 606 4 SO4 SO4 . 
I 6 SO4 AAA 1 607 5 SO4 SO4 . 
J 6 SO4 AAA 1 608 6 SO4 SO4 . 
K 7 HOH AAA 1 701 118 HOH HOH . 
K 7 HOH AAA 2 702 171 HOH HOH . 
K 7 HOH AAA 3 703 217 HOH HOH . 
K 7 HOH AAA 4 704 84 HOH HOH . 
K 7 HOH AAA 5 705 91 HOH HOH . 
K 7 HOH AAA 6 706 100 HOH HOH . 
K 7 HOH AAA 7 707 105 HOH HOH . 
K 7 HOH AAA 8 708 80 HOH HOH . 
K 7 HOH AAA 9 709 135 HOH HOH . 
K 7 HOH AAA 10 710 141 HOH HOH . 
K 7 HOH AAA 11 711 19 HOH HOH . 
K 7 HOH AAA 12 712 33 HOH HOH . 
K 7 HOH AAA 13 713 113 HOH HOH . 
K 7 HOH AAA 14 714 194 HOH HOH . 
K 7 HOH AAA 15 715 138 HOH HOH . 
K 7 HOH AAA 16 716 89 HOH HOH . 
K 7 HOH AAA 17 717 216 HOH HOH . 
K 7 HOH AAA 18 718 60 HOH HOH . 
K 7 HOH AAA 19 719 117 HOH HOH . 
K 7 HOH AAA 20 720 177 HOH HOH . 
K 7 HOH AAA 21 721 22 HOH HOH . 
K 7 HOH AAA 22 722 110 HOH HOH . 
K 7 HOH AAA 23 723 44 HOH HOH . 
K 7 HOH AAA 24 724 86 HOH HOH . 
K 7 HOH AAA 25 725 36 HOH HOH . 
K 7 HOH AAA 26 726 64 HOH HOH . 
K 7 HOH AAA 27 727 61 HOH HOH . 
K 7 HOH AAA 28 728 30 HOH HOH . 
K 7 HOH AAA 29 729 95 HOH HOH . 
K 7 HOH AAA 30 730 6 HOH HOH . 
K 7 HOH AAA 31 731 148 HOH HOH . 
K 7 HOH AAA 32 732 21 HOH HOH . 
K 7 HOH AAA 33 733 10 HOH HOH . 
K 7 HOH AAA 34 734 48 HOH HOH . 
K 7 HOH AAA 35 735 62 HOH HOH . 
K 7 HOH AAA 36 736 12 HOH HOH . 
K 7 HOH AAA 37 737 58 HOH HOH . 
K 7 HOH AAA 38 738 99 HOH HOH . 
K 7 HOH AAA 39 739 23 HOH HOH . 
K 7 HOH AAA 40 740 38 HOH HOH . 
K 7 HOH AAA 41 741 47 HOH HOH . 
K 7 HOH AAA 42 742 28 HOH HOH . 
K 7 HOH AAA 43 743 162 HOH HOH . 
K 7 HOH AAA 44 744 140 HOH HOH . 
K 7 HOH AAA 45 745 186 HOH HOH . 
K 7 HOH AAA 46 746 198 HOH HOH . 
K 7 HOH AAA 47 747 195 HOH HOH . 
K 7 HOH AAA 48 748 81 HOH HOH . 
K 7 HOH AAA 49 749 42 HOH HOH . 
K 7 HOH AAA 50 750 104 HOH HOH . 
K 7 HOH AAA 51 751 183 HOH HOH . 
K 7 HOH AAA 52 752 31 HOH HOH . 
K 7 HOH AAA 53 753 202 HOH HOH . 
K 7 HOH AAA 54 754 63 HOH HOH . 
K 7 HOH AAA 55 755 32 HOH HOH . 
K 7 HOH AAA 56 756 20 HOH HOH . 
K 7 HOH AAA 57 757 43 HOH HOH . 
K 7 HOH AAA 58 758 125 HOH HOH . 
K 7 HOH AAA 59 759 220 HOH HOH . 
K 7 HOH AAA 60 760 24 HOH HOH . 
K 7 HOH AAA 61 761 41 HOH HOH . 
K 7 HOH AAA 62 762 3 HOH HOH . 
K 7 HOH AAA 63 763 207 HOH HOH . 
K 7 HOH AAA 64 764 78 HOH HOH . 
K 7 HOH AAA 65 765 116 HOH HOH . 
K 7 HOH AAA 66 766 88 HOH HOH . 
K 7 HOH AAA 67 767 56 HOH HOH . 
K 7 HOH AAA 68 768 18 HOH HOH . 
K 7 HOH AAA 69 769 13 HOH HOH . 
K 7 HOH AAA 70 770 132 HOH HOH . 
K 7 HOH AAA 71 771 192 HOH HOH . 
K 7 HOH AAA 72 772 26 HOH HOH . 
K 7 HOH AAA 73 773 98 HOH HOH . 
K 7 HOH AAA 74 774 166 HOH HOH . 
K 7 HOH AAA 75 775 25 HOH HOH . 
K 7 HOH AAA 76 776 70 HOH HOH . 
K 7 HOH AAA 77 777 200 HOH HOH . 
K 7 HOH AAA 78 778 93 HOH HOH . 
K 7 HOH AAA 79 779 201 HOH HOH . 
K 7 HOH AAA 80 780 179 HOH HOH . 
K 7 HOH AAA 81 781 52 HOH HOH . 
K 7 HOH AAA 82 782 68 HOH HOH . 
K 7 HOH AAA 83 783 27 HOH HOH . 
K 7 HOH AAA 84 784 149 HOH HOH . 
K 7 HOH AAA 85 785 167 HOH HOH . 
K 7 HOH AAA 86 786 205 HOH HOH . 
K 7 HOH AAA 87 787 83 HOH HOH . 
K 7 HOH AAA 88 788 37 HOH HOH . 
K 7 HOH AAA 89 789 137 HOH HOH . 
K 7 HOH AAA 90 790 8 HOH HOH . 
K 7 HOH AAA 91 791 72 HOH HOH . 
K 7 HOH AAA 92 792 66 HOH HOH . 
K 7 HOH AAA 93 793 53 HOH HOH . 
K 7 HOH AAA 94 794 170 HOH HOH . 
K 7 HOH AAA 95 795 139 HOH HOH . 
K 7 HOH AAA 96 796 128 HOH HOH . 
K 7 HOH AAA 97 797 7 HOH HOH . 
K 7 HOH AAA 98 798 79 HOH HOH . 
K 7 HOH AAA 99 799 196 HOH HOH . 
K 7 HOH AAA 100 800 39 HOH HOH . 
K 7 HOH AAA 101 801 76 HOH HOH . 
K 7 HOH AAA 102 802 157 HOH HOH . 
K 7 HOH AAA 103 803 77 HOH HOH . 
K 7 HOH AAA 104 804 49 HOH HOH . 
K 7 HOH AAA 105 805 212 HOH HOH . 
K 7 HOH AAA 106 806 190 HOH HOH . 
K 7 HOH AAA 107 807 151 HOH HOH . 
K 7 HOH AAA 108 808 14 HOH HOH . 
K 7 HOH AAA 109 809 9 HOH HOH . 
K 7 HOH AAA 110 810 17 HOH HOH . 
K 7 HOH AAA 111 811 193 HOH HOH . 
K 7 HOH AAA 112 812 185 HOH HOH . 
K 7 HOH AAA 113 813 16 HOH HOH . 
K 7 HOH AAA 114 814 165 HOH HOH . 
K 7 HOH AAA 115 815 197 HOH HOH . 
K 7 HOH AAA 116 816 109 HOH HOH . 
K 7 HOH AAA 117 817 222 HOH HOH . 
K 7 HOH AAA 118 818 153 HOH HOH . 
K 7 HOH AAA 119 819 188 HOH HOH . 
K 7 HOH AAA 120 820 15 HOH HOH . 
K 7 HOH AAA 121 821 108 HOH HOH . 
K 7 HOH AAA 122 822 203 HOH HOH . 
K 7 HOH AAA 123 823 82 HOH HOH . 
K 7 HOH AAA 124 824 144 HOH HOH . 
K 7 HOH AAA 125 825 191 HOH HOH . 
K 7 HOH AAA 126 826 169 HOH HOH . 
K 7 HOH AAA 127 827 182 HOH HOH . 
K 7 HOH AAA 128 828 54 HOH HOH . 
K 7 HOH AAA 129 829 176 HOH HOH . 
K 7 HOH AAA 130 830 87 HOH HOH . 
K 7 HOH AAA 131 831 211 HOH HOH . 
K 7 HOH AAA 132 832 34 HOH HOH . 
K 7 HOH AAA 133 833 199 HOH HOH . 
K 7 HOH AAA 134 834 59 HOH HOH . 
K 7 HOH AAA 135 835 181 HOH HOH . 
K 7 HOH AAA 136 836 158 HOH HOH . 
K 7 HOH AAA 137 837 129 HOH HOH . 
K 7 HOH AAA 138 838 103 HOH HOH . 
K 7 HOH AAA 139 839 213 HOH HOH . 
K 7 HOH AAA 140 840 187 HOH HOH . 
K 7 HOH AAA 141 841 111 HOH HOH . 
K 7 HOH AAA 142 842 121 HOH HOH . 
K 7 HOH AAA 143 843 175 HOH HOH . 
K 7 HOH AAA 144 844 178 HOH HOH . 
K 7 HOH AAA 145 845 159 HOH HOH . 
K 7 HOH AAA 146 846 204 HOH HOH . 
K 7 HOH AAA 147 847 69 HOH HOH . 
K 7 HOH AAA 148 848 130 HOH HOH . 
K 7 HOH AAA 149 849 127 HOH HOH . 
K 7 HOH AAA 150 850 180 HOH HOH . 
K 7 HOH AAA 151 851 219 HOH HOH . 
K 7 HOH AAA 152 852 102 HOH HOH . 
K 7 HOH AAA 153 853 214 HOH HOH . 
K 7 HOH AAA 154 854 112 HOH HOH . 
K 7 HOH AAA 155 855 221 HOH HOH . 
K 7 HOH AAA 156 856 152 HOH HOH . 
K 7 HOH AAA 157 857 133 HOH HOH . 
K 7 HOH AAA 158 858 155 HOH HOH . 
K 7 HOH AAA 159 859 164 HOH HOH . 
K 7 HOH AAA 160 860 174 HOH HOH . 
K 7 HOH AAA 161 861 134 HOH HOH . 
K 7 HOH AAA 162 862 131 HOH HOH . 
K 7 HOH AAA 163 863 173 HOH HOH . 
K 7 HOH AAA 164 864 35 HOH HOH . 
K 7 HOH AAA 165 865 154 HOH HOH . 
K 7 HOH AAA 166 866 172 HOH HOH . 
L 7 HOH BBB 1 101 92 HOH HOH . 
L 7 HOH BBB 2 102 145 HOH HOH . 
L 7 HOH BBB 3 103 136 HOH HOH . 
L 7 HOH BBB 4 104 163 HOH HOH . 
L 7 HOH BBB 5 105 142 HOH HOH . 
L 7 HOH BBB 6 106 75 HOH HOH . 
L 7 HOH BBB 7 107 114 HOH HOH . 
L 7 HOH BBB 8 108 156 HOH HOH . 
L 7 HOH BBB 9 109 106 HOH HOH . 
L 7 HOH BBB 10 110 71 HOH HOH . 
L 7 HOH BBB 11 111 57 HOH HOH . 
L 7 HOH BBB 12 112 184 HOH HOH . 
L 7 HOH BBB 13 113 73 HOH HOH . 
L 7 HOH BBB 14 114 40 HOH HOH . 
L 7 HOH BBB 15 115 189 HOH HOH . 
L 7 HOH BBB 16 116 90 HOH HOH . 
L 7 HOH BBB 17 117 143 HOH HOH . 
L 7 HOH BBB 18 118 65 HOH HOH . 
L 7 HOH BBB 19 119 55 HOH HOH . 
L 7 HOH BBB 20 120 160 HOH HOH . 
L 7 HOH BBB 21 121 168 HOH HOH . 
L 7 HOH BBB 22 122 11 HOH HOH . 
L 7 HOH BBB 23 123 161 HOH HOH . 
L 7 HOH BBB 24 124 147 HOH HOH . 
L 7 HOH BBB 25 125 115 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . F 6 -5.107 -2.775 46.123 1 62.5 ? S SO4 604 AAA 1 
HETATM 2 O O1 SO4 . . . F 6 -4.804 -2.988 44.731 1 69.88 ? O1 SO4 604 AAA 1 
HETATM 3 O O2 SO4 . . . F 6 -5.44 -1.371 46.326 1 62.17 ? O2 SO4 604 AAA 1 
HETATM 4 O O3 SO4 . . . F 6 -3.945 -3.124 46.902 1 55.81 ? O3 SO4 604 AAA 1 
HETATM 5 O O4 SO4 . . . F 6 -6.225 -3.589 46.521 1 52.47 ? O4 SO4 604 AAA 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           5 
#