data_6ZDR # _model_server_result.job_id egNjFVg_EgIo35BZD0tC3Q _model_server_result.datetime_utc '2024-12-04 08:25:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zdr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1202}' # _entry.id 6ZDR # _exptl.entry_id 6ZDR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZDR _cell.length_a 39.263 _cell.length_b 180.226 _cell.length_c 140.001 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZDR _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 71 1_555 A SG CYS 168 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 A SG CYS 83 A CYS 74 1_555 A SG CYS 155 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf3 A SG CYS 86 A CYS 77 1_555 A SG CYS 175 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf4 A SG CYS 364 A CYS 259 1_555 A SG CYS 367 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OD1 ASP 61 A ASP 52 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc2 A OG SER 100 A SER 91 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc3 C NA NA . A NA 1202 1_555 V O HOH . A HOH 1315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc4 C NA NA . A NA 1202 1_555 V O HOH . A HOH 1334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc5 C NA NA . A NA 1202 1_555 V O HOH . A HOH 1377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6ZDR _atom_sites.fract_transf_matrix[1][1] 0.025469 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005549 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007143 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 QGE A 1 1201 1201 QGE UNL . C 3 NA A 1 1202 1 NA NA . D 4 CLR A 1 1203 1 CLR CLR . E 4 CLR A 1 1204 2 CLR CLR . F 4 CLR A 1 1205 3 CLR CLR . G 5 OLA A 1 1206 4 OLA OLA . H 5 OLA A 1 1207 6 OLA OLA . I 5 OLA A 1 1208 7 OLA OLA . J 5 OLA A 1 1209 8 OLA OLA . K 5 OLA A 1 1210 9 OLA OLA . L 6 OLC A 1 1211 10 OLC OLC . M 6 OLC A 1 1212 11 OLC OLC . N 6 OLC A 1 1213 12 OLC OLC . O 5 OLA A 1 1214 14 OLA OLA . P 5 OLA A 1 1215 15 OLA OLA . Q 6 OLC A 1 1216 16 OLC OLC . R 5 OLA A 1 1217 17 OLA OLA . S 5 OLA A 1 1218 18 OLA OLA . T 5 OLA A 1 1219 19 OLA OLA . U 5 OLA A 1 1220 20 OLA OLA . V 7 HOH A 1 1301 49 HOH HOH . V 7 HOH A 2 1302 26 HOH HOH . V 7 HOH A 3 1303 92 HOH HOH . V 7 HOH A 4 1304 83 HOH HOH . V 7 HOH A 5 1305 32 HOH HOH . V 7 HOH A 6 1306 77 HOH HOH . V 7 HOH A 7 1307 145 HOH HOH . V 7 HOH A 8 1308 81 HOH HOH . V 7 HOH A 9 1309 141 HOH HOH . V 7 HOH A 10 1310 137 HOH HOH . V 7 HOH A 11 1311 12 HOH HOH . V 7 HOH A 12 1312 79 HOH HOH . V 7 HOH A 13 1313 30 HOH HOH . V 7 HOH A 14 1314 93 HOH HOH . V 7 HOH A 15 1315 33 HOH HOH . V 7 HOH A 16 1316 69 HOH HOH . V 7 HOH A 17 1317 9 HOH HOH . V 7 HOH A 18 1318 3 HOH HOH . V 7 HOH A 19 1319 57 HOH HOH . V 7 HOH A 20 1320 76 HOH HOH . V 7 HOH A 21 1321 39 HOH HOH . V 7 HOH A 22 1322 35 HOH HOH . V 7 HOH A 23 1323 61 HOH HOH . V 7 HOH A 24 1324 56 HOH HOH . V 7 HOH A 25 1325 48 HOH HOH . V 7 HOH A 26 1326 130 HOH HOH . V 7 HOH A 27 1327 134 HOH HOH . V 7 HOH A 28 1328 119 HOH HOH . V 7 HOH A 29 1329 37 HOH HOH . V 7 HOH A 30 1330 24 HOH HOH . V 7 HOH A 31 1331 80 HOH HOH . V 7 HOH A 32 1332 127 HOH HOH . V 7 HOH A 33 1333 22 HOH HOH . V 7 HOH A 34 1334 144 HOH HOH . V 7 HOH A 35 1335 129 HOH HOH . V 7 HOH A 36 1336 4 HOH HOH . V 7 HOH A 37 1337 2 HOH HOH . V 7 HOH A 38 1338 47 HOH HOH . V 7 HOH A 39 1339 7 HOH HOH . V 7 HOH A 40 1340 14 HOH HOH . V 7 HOH A 41 1341 106 HOH HOH . V 7 HOH A 42 1342 51 HOH HOH . V 7 HOH A 43 1343 38 HOH HOH . V 7 HOH A 44 1344 105 HOH HOH . V 7 HOH A 45 1345 16 HOH HOH . V 7 HOH A 46 1346 40 HOH HOH . V 7 HOH A 47 1347 31 HOH HOH . V 7 HOH A 48 1348 136 HOH HOH . V 7 HOH A 49 1349 21 HOH HOH . V 7 HOH A 50 1350 6 HOH HOH . V 7 HOH A 51 1351 17 HOH HOH . V 7 HOH A 52 1352 42 HOH HOH . V 7 HOH A 53 1353 50 HOH HOH . V 7 HOH A 54 1354 13 HOH HOH . V 7 HOH A 55 1355 5 HOH HOH . V 7 HOH A 56 1356 108 HOH HOH . V 7 HOH A 57 1357 117 HOH HOH . V 7 HOH A 58 1358 62 HOH HOH . V 7 HOH A 59 1359 19 HOH HOH . V 7 HOH A 60 1360 27 HOH HOH . V 7 HOH A 61 1361 58 HOH HOH . V 7 HOH A 62 1362 68 HOH HOH . V 7 HOH A 63 1363 8 HOH HOH . V 7 HOH A 64 1364 114 HOH HOH . V 7 HOH A 65 1365 59 HOH HOH . V 7 HOH A 66 1366 70 HOH HOH . V 7 HOH A 67 1367 34 HOH HOH . V 7 HOH A 68 1368 122 HOH HOH . V 7 HOH A 69 1369 45 HOH HOH . V 7 HOH A 70 1370 73 HOH HOH . V 7 HOH A 71 1371 1 HOH HOH . V 7 HOH A 72 1372 123 HOH HOH . V 7 HOH A 73 1373 82 HOH HOH . V 7 HOH A 74 1374 78 HOH HOH . V 7 HOH A 75 1375 131 HOH HOH . V 7 HOH A 76 1376 103 HOH HOH . V 7 HOH A 77 1377 44 HOH HOH . V 7 HOH A 78 1378 143 HOH HOH . V 7 HOH A 79 1379 63 HOH HOH . V 7 HOH A 80 1380 18 HOH HOH . V 7 HOH A 81 1381 43 HOH HOH . V 7 HOH A 82 1382 142 HOH HOH . V 7 HOH A 83 1383 11 HOH HOH . V 7 HOH A 84 1384 110 HOH HOH . V 7 HOH A 85 1385 25 HOH HOH . V 7 HOH A 86 1386 100 HOH HOH . V 7 HOH A 87 1387 115 HOH HOH . V 7 HOH A 88 1388 97 HOH HOH . V 7 HOH A 89 1389 10 HOH HOH . V 7 HOH A 90 1390 72 HOH HOH . V 7 HOH A 91 1391 138 HOH HOH . V 7 HOH A 92 1392 126 HOH HOH . V 7 HOH A 93 1393 96 HOH HOH . V 7 HOH A 94 1394 29 HOH HOH . V 7 HOH A 95 1395 109 HOH HOH . V 7 HOH A 96 1396 132 HOH HOH . V 7 HOH A 97 1397 74 HOH HOH . V 7 HOH A 98 1398 128 HOH HOH . V 7 HOH A 99 1399 116 HOH HOH . V 7 HOH A 100 1400 140 HOH HOH . V 7 HOH A 101 1401 146 HOH HOH . V 7 HOH A 102 1402 41 HOH HOH . V 7 HOH A 103 1403 112 HOH HOH . V 7 HOH A 104 1404 75 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -23.52 _atom_site.Cartn_y -8.398 _atom_site.Cartn_z 16.55 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.99 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 398 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #