data_6ZDR # _model_server_result.job_id acZpRVjbqrmGkaubeA5AmA _model_server_result.datetime_utc '2024-12-04 08:27:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zdr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1211}' # _entry.id 6ZDR # _exptl.entry_id 6ZDR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZDR _cell.length_a 39.263 _cell.length_b 180.226 _cell.length_c 140.001 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZDR _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 L N N ? 6 M N N ? 6 N N N ? 6 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 71 1_555 A SG CYS 168 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 A SG CYS 83 A CYS 74 1_555 A SG CYS 155 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf3 A SG CYS 86 A CYS 77 1_555 A SG CYS 175 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf4 A SG CYS 364 A CYS 259 1_555 A SG CYS 367 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OD1 ASP 61 A ASP 52 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc2 A OG SER 100 A SER 91 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc3 C NA NA . A NA 1202 1_555 V O HOH . A HOH 1315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc4 C NA NA . A NA 1202 1_555 V O HOH . A HOH 1334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc5 C NA NA . A NA 1202 1_555 V O HOH . A HOH 1377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 367 n n C10 C9 OLC doub 368 n n C10 C11 OLC sing 369 n n C9 C8 OLC sing 370 n n C17 C16 OLC sing 371 z n C11 C12 OLC sing 372 n n C8 C7 OLC sing 373 n n C24 C22 OLC sing 374 n n C24 O25 OLC sing 375 n n C16 C15 OLC sing 376 n n C12 C13 OLC sing 377 n n C7 C6 OLC sing 378 n n C15 C14 OLC sing 379 n n C13 C14 OLC sing 380 n n C6 C5 OLC sing 381 n n C5 C4 OLC sing 382 n n C4 C3 OLC sing 383 n n C3 C2 OLC sing 384 n n C2 C1 OLC sing 385 n n C21 C22 OLC sing 386 n n C21 O20 OLC sing 387 n n C1 O19 OLC doub 388 n n C1 O20 OLC sing 389 n n C22 O23 OLC sing 390 n n C18 H18 OLC sing 391 n n C18 H18A OLC sing 392 n n C18 H18B OLC sing 393 n n C10 H10 OLC sing 394 n n C9 H9 OLC sing 395 n n C17 H17 OLC sing 396 n n C17 H17A OLC sing 397 n n C11 H11 OLC sing 398 n n C11 H11A OLC sing 399 n n C8 H8 OLC sing 400 n n C8 H8A OLC sing 401 n n C24 H24 OLC sing 402 n n C24 H24A OLC sing 403 n n C16 H16 OLC sing 404 n n C16 H16A OLC sing 405 n n C12 H12 OLC sing 406 n n C12 H12A OLC sing 407 n n C7 H7 OLC sing 408 n n C7 H7A OLC sing 409 n n C15 H15 OLC sing 410 n n C15 H15A OLC sing 411 n n C13 H13 OLC sing 412 n n C13 H13A OLC sing 413 n n C6 H6 OLC sing 414 n n C6 H6A OLC sing 415 n n C14 H14 OLC sing 416 n n C14 H14A OLC sing 417 n n C5 H5 OLC sing 418 n n C5 H5A OLC sing 419 n n C4 H4 OLC sing 420 n n C4 H4A OLC sing 421 n n C3 H3 OLC sing 422 n n C3 H3A OLC sing 423 n n C2 H2 OLC sing 424 n n C2 H2A OLC sing 425 n n C21 H21 OLC sing 426 n n C21 H21A OLC sing 427 n n C22 H22 OLC sing 428 n n O25 HO25 OLC sing 429 n n O23 HO23 OLC sing 430 n n # _atom_sites.entry_id 6ZDR _atom_sites.fract_transf_matrix[1][1] 0.025469 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005549 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007143 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 QGE A 1 1201 1201 QGE UNL . C 3 NA A 1 1202 1 NA NA . D 4 CLR A 1 1203 1 CLR CLR . E 4 CLR A 1 1204 2 CLR CLR . F 4 CLR A 1 1205 3 CLR CLR . G 5 OLA A 1 1206 4 OLA OLA . H 5 OLA A 1 1207 6 OLA OLA . I 5 OLA A 1 1208 7 OLA OLA . J 5 OLA A 1 1209 8 OLA OLA . K 5 OLA A 1 1210 9 OLA OLA . L 6 OLC A 1 1211 10 OLC OLC . M 6 OLC A 1 1212 11 OLC OLC . N 6 OLC A 1 1213 12 OLC OLC . O 5 OLA A 1 1214 14 OLA OLA . P 5 OLA A 1 1215 15 OLA OLA . Q 6 OLC A 1 1216 16 OLC OLC . R 5 OLA A 1 1217 17 OLA OLA . S 5 OLA A 1 1218 18 OLA OLA . T 5 OLA A 1 1219 19 OLA OLA . U 5 OLA A 1 1220 20 OLA OLA . V 7 HOH A 1 1301 49 HOH HOH . V 7 HOH A 2 1302 26 HOH HOH . V 7 HOH A 3 1303 92 HOH HOH . V 7 HOH A 4 1304 83 HOH HOH . V 7 HOH A 5 1305 32 HOH HOH . V 7 HOH A 6 1306 77 HOH HOH . V 7 HOH A 7 1307 145 HOH HOH . V 7 HOH A 8 1308 81 HOH HOH . V 7 HOH A 9 1309 141 HOH HOH . V 7 HOH A 10 1310 137 HOH HOH . V 7 HOH A 11 1311 12 HOH HOH . V 7 HOH A 12 1312 79 HOH HOH . V 7 HOH A 13 1313 30 HOH HOH . V 7 HOH A 14 1314 93 HOH HOH . V 7 HOH A 15 1315 33 HOH HOH . V 7 HOH A 16 1316 69 HOH HOH . V 7 HOH A 17 1317 9 HOH HOH . V 7 HOH A 18 1318 3 HOH HOH . V 7 HOH A 19 1319 57 HOH HOH . V 7 HOH A 20 1320 76 HOH HOH . V 7 HOH A 21 1321 39 HOH HOH . V 7 HOH A 22 1322 35 HOH HOH . V 7 HOH A 23 1323 61 HOH HOH . V 7 HOH A 24 1324 56 HOH HOH . V 7 HOH A 25 1325 48 HOH HOH . V 7 HOH A 26 1326 130 HOH HOH . V 7 HOH A 27 1327 134 HOH HOH . V 7 HOH A 28 1328 119 HOH HOH . V 7 HOH A 29 1329 37 HOH HOH . V 7 HOH A 30 1330 24 HOH HOH . V 7 HOH A 31 1331 80 HOH HOH . V 7 HOH A 32 1332 127 HOH HOH . V 7 HOH A 33 1333 22 HOH HOH . V 7 HOH A 34 1334 144 HOH HOH . V 7 HOH A 35 1335 129 HOH HOH . V 7 HOH A 36 1336 4 HOH HOH . V 7 HOH A 37 1337 2 HOH HOH . V 7 HOH A 38 1338 47 HOH HOH . V 7 HOH A 39 1339 7 HOH HOH . V 7 HOH A 40 1340 14 HOH HOH . V 7 HOH A 41 1341 106 HOH HOH . V 7 HOH A 42 1342 51 HOH HOH . V 7 HOH A 43 1343 38 HOH HOH . V 7 HOH A 44 1344 105 HOH HOH . V 7 HOH A 45 1345 16 HOH HOH . V 7 HOH A 46 1346 40 HOH HOH . V 7 HOH A 47 1347 31 HOH HOH . V 7 HOH A 48 1348 136 HOH HOH . V 7 HOH A 49 1349 21 HOH HOH . V 7 HOH A 50 1350 6 HOH HOH . V 7 HOH A 51 1351 17 HOH HOH . V 7 HOH A 52 1352 42 HOH HOH . V 7 HOH A 53 1353 50 HOH HOH . V 7 HOH A 54 1354 13 HOH HOH . V 7 HOH A 55 1355 5 HOH HOH . V 7 HOH A 56 1356 108 HOH HOH . V 7 HOH A 57 1357 117 HOH HOH . V 7 HOH A 58 1358 62 HOH HOH . V 7 HOH A 59 1359 19 HOH HOH . V 7 HOH A 60 1360 27 HOH HOH . V 7 HOH A 61 1361 58 HOH HOH . V 7 HOH A 62 1362 68 HOH HOH . V 7 HOH A 63 1363 8 HOH HOH . V 7 HOH A 64 1364 114 HOH HOH . V 7 HOH A 65 1365 59 HOH HOH . V 7 HOH A 66 1366 70 HOH HOH . V 7 HOH A 67 1367 34 HOH HOH . V 7 HOH A 68 1368 122 HOH HOH . V 7 HOH A 69 1369 45 HOH HOH . V 7 HOH A 70 1370 73 HOH HOH . V 7 HOH A 71 1371 1 HOH HOH . V 7 HOH A 72 1372 123 HOH HOH . V 7 HOH A 73 1373 82 HOH HOH . V 7 HOH A 74 1374 78 HOH HOH . V 7 HOH A 75 1375 131 HOH HOH . V 7 HOH A 76 1376 103 HOH HOH . V 7 HOH A 77 1377 44 HOH HOH . V 7 HOH A 78 1378 143 HOH HOH . V 7 HOH A 79 1379 63 HOH HOH . V 7 HOH A 80 1380 18 HOH HOH . V 7 HOH A 81 1381 43 HOH HOH . V 7 HOH A 82 1382 142 HOH HOH . V 7 HOH A 83 1383 11 HOH HOH . V 7 HOH A 84 1384 110 HOH HOH . V 7 HOH A 85 1385 25 HOH HOH . V 7 HOH A 86 1386 100 HOH HOH . V 7 HOH A 87 1387 115 HOH HOH . V 7 HOH A 88 1388 97 HOH HOH . V 7 HOH A 89 1389 10 HOH HOH . V 7 HOH A 90 1390 72 HOH HOH . V 7 HOH A 91 1391 138 HOH HOH . V 7 HOH A 92 1392 126 HOH HOH . V 7 HOH A 93 1393 96 HOH HOH . V 7 HOH A 94 1394 29 HOH HOH . V 7 HOH A 95 1395 109 HOH HOH . V 7 HOH A 96 1396 132 HOH HOH . V 7 HOH A 97 1397 74 HOH HOH . V 7 HOH A 98 1398 128 HOH HOH . V 7 HOH A 99 1399 116 HOH HOH . V 7 HOH A 100 1400 140 HOH HOH . V 7 HOH A 101 1401 146 HOH HOH . V 7 HOH A 102 1402 41 HOH HOH . V 7 HOH A 103 1403 112 HOH HOH . V 7 HOH A 104 1404 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . L 6 -4.828 -2.506 25.395 1 56.52 ? C10 OLC 1211 A 1 HETATM 2 C C9 OLC . . . L 6 -4.399 -1.416 24.735 1 56.12 ? C9 OLC 1211 A 1 HETATM 3 C C11 OLC . . . L 6 -5.135 -2.515 26.885 1 56.71 ? C11 OLC 1211 A 1 HETATM 4 C C8 OLC . . . L 6 -4.173 -0.084 25.425 1 55.52 ? C8 OLC 1211 A 1 HETATM 5 C C24 OLC . . . L 6 -1.236 13.113 26.114 1 55.68 ? C24 OLC 1211 A 1 HETATM 6 C C12 OLC . . . L 6 -6.61 -2.81 27.134 1 56.56 ? C12 OLC 1211 A 1 HETATM 7 C C7 OLC . . . L 6 -3.414 0.892 24.537 1 54.85 ? C7 OLC 1211 A 1 HETATM 8 C C6 OLC . . . L 6 -3.094 2.129 25.365 1 54.24 ? C6 OLC 1211 A 1 HETATM 9 C C5 OLC . . . L 6 -3.283 3.437 24.609 1 53.55 ? C5 OLC 1211 A 1 HETATM 10 C C4 OLC . . . L 6 -2.92 4.586 25.542 1 53.01 ? C4 OLC 1211 A 1 HETATM 11 C C3 OLC . . . L 6 -3.03 5.961 24.903 1 52.77 ? C3 OLC 1211 A 1 HETATM 12 C C2 OLC . . . L 6 -2.633 7.01 25.937 1 53.21 ? C2 OLC 1211 A 1 HETATM 13 C C21 OLC . . . L 6 -1.753 10.754 25.472 1 55.09 ? C21 OLC 1211 A 1 HETATM 14 C C1 OLC . . . L 6 -2.51 8.402 25.364 1 54.01 ? C1 OLC 1211 A 1 HETATM 15 C C22 OLC . . . L 6 -2.071 11.876 26.443 1 55.71 ? C22 OLC 1211 A 1 HETATM 16 O O19 OLC . . . L 6 -2.828 8.66 24.235 1 54.61 ? O19 OLC 1211 A 1 HETATM 17 O O25 OLC . . . L 6 -1.995 14.056 25.349 1 55.98 ? O25 OLC 1211 A 1 HETATM 18 O O23 OLC . . . L 6 -3.481 12.144 26.378 1 56.4 ? O23 OLC 1211 A 1 HETATM 19 O O20 OLC . . . L 6 -2.011 9.516 26.13 1 54.65 ? O20 OLC 1211 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 499 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 19 #