data_6ZDV
#
_model_server_result.job_id            kmCNe-ayK1bxK_GANljEjw 
_model_server_result.datetime_utc      '2024-11-08 14:35:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zdv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1206}' 
#
_entry.id    6ZDV 
#
_exptl.entry_id    6ZDV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6ZDV 
_cell.length_a            39.414 
_cell.length_b            179.833 
_cell.length_c            140.085 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZDV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 80 A CYS 71 1_555 A SG CYS 168 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 A SG CYS 83 A CYS 74 1_555 A SG CYS 155 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? 
disulf ? disulf3 A SG CYS 86 A CYS 77 1_555 A SG CYS 175 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf4 A SG CYS 364 A CYS 259 1_555 A SG CYS 367 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? 
metalc ? metalc1 A OD1 ASP 61 A ASP 52 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc2 A OG SER 100 A SER 91 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? 
metalc ? metalc3 C NA NA . A NA 1202 1_555 W O HOH . A HOH 1338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? 
metalc ? metalc4 C NA NA . A NA 1202 1_555 W O HOH . A HOH 1354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O19 OLB doub 367 n n 
C1 O20 OLB sing 368 n n 
C2 C1 OLB sing 369 n n 
C3 C2 OLB sing 370 n n 
C4 C3 OLB sing 371 n n 
C5 C4 OLB sing 372 n n 
C5 C6 OLB sing 373 n n 
O20 C21 OLB sing 374 n n 
C21 C22 OLB sing 375 n n 
C22 C24 OLB sing 376 n n 
O23 C22 OLB sing 377 n n 
C24 O25 OLB sing 378 n n 
C6 C7 OLB sing 379 n n 
C7 C8 OLB sing 380 n n 
C8 C9 OLB sing 381 n n 
C9 C10 OLB doub 382 z n 
C10 C11 OLB sing 383 n n 
C2 H2 OLB sing 384 n n 
C2 H2A OLB sing 385 n n 
C3 H3 OLB sing 386 n n 
C3 H3A OLB sing 387 n n 
C4 H4 OLB sing 388 n n 
C4 H4A OLB sing 389 n n 
C5 H5 OLB sing 390 n n 
C5 H5A OLB sing 391 n n 
C21 H21 OLB sing 392 n n 
C21 H21A OLB sing 393 n n 
C22 H22 OLB sing 394 n n 
O23 HO23 OLB sing 395 n n 
C24 H24 OLB sing 396 n n 
C24 H24A OLB sing 397 n n 
O25 HO25 OLB sing 398 n n 
C6 H16 OLB sing 399 n n 
C6 H17 OLB sing 400 n n 
C7 H18 OLB sing 401 n n 
C7 H19 OLB sing 402 n n 
C8 H20 OLB sing 403 n n 
C8 H211 OLB sing 404 n n 
C9 H221 OLB sing 405 n n 
C10 H23 OLB sing 406 n n 
C11 H241 OLB sing 407 n n 
C11 H25 OLB sing 408 n n 
C11 C12 OLB sing 409 n n 
C12 H26 OLB sing 410 n n 
C12 C13 OLB sing 411 n n 
C12 H27 OLB sing 412 n n 
C13 C14 OLB sing 413 n n 
C13 H28 OLB sing 414 n n 
C13 H29 OLB sing 415 n n 
C14 H30 OLB sing 416 n n 
C14 H31 OLB sing 417 n n 
C14 C15 OLB sing 418 n n 
C15 C16 OLB sing 419 n n 
C15 H32 OLB sing 420 n n 
C15 H33 OLB sing 421 n n 
C16 H34 OLB sing 422 n n 
C16 H35 OLB sing 423 n n 
C16 C17 OLB sing 424 n n 
C17 C18 OLB sing 425 n n 
C17 H36 OLB sing 426 n n 
C17 H37 OLB sing 427 n n 
C18 H38 OLB sing 428 n n 
C18 H39 OLB sing 429 n n 
C18 H40 OLB sing 430 n n 
#
_atom_sites.entry_id                     6ZDV 
_atom_sites.fract_transf_matrix[1][1]    0.025372 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005561 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007139 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 QGW A 1 1201 1201 QGW UNL . 
C 3 NA A 1 1202 1 NA NA . 
D 4 CLR A 1 1203 1 CLR CLR . 
E 4 CLR A 1 1204 2 CLR CLR . 
F 4 CLR A 1 1205 3 CLR CLR . 
G 5 OLB A 1 1206 4 OLB OLB . 
H 6 OLA A 1 1207 5 OLA OLA . 
I 6 OLA A 1 1208 6 OLA OLA . 
J 6 OLA A 1 1209 7 OLA OLA . 
K 6 OLA A 1 1210 8 OLA OLA . 
L 6 OLA A 1 1211 9 OLA OLA . 
M 6 OLA A 1 1212 10 OLA OLA . 
N 6 OLA A 1 1213 11 OLA OLA . 
O 6 OLA A 1 1214 12 OLA OLA . 
P 6 OLA A 1 1215 13 OLA OLA . 
Q 6 OLA A 1 1216 14 OLA OLA . 
R 6 OLA A 1 1217 15 OLA OLA . 
S 6 OLA A 1 1218 16 OLA OLA . 
T 6 OLA A 1 1219 17 OLA OLA . 
U 6 OLA A 1 1220 18 OLA OLA . 
V 7 OLC A 1 1221 19 OLC OLC . 
W 8 HOH A 1 1301 51 HOH HOH . 
W 8 HOH A 2 1302 29 HOH HOH . 
W 8 HOH A 3 1303 84 HOH HOH . 
W 8 HOH A 4 1304 46 HOH HOH . 
W 8 HOH A 5 1305 48 HOH HOH . 
W 8 HOH A 6 1306 77 HOH HOH . 
W 8 HOH A 7 1307 41 HOH HOH . 
W 8 HOH A 8 1308 38 HOH HOH . 
W 8 HOH A 9 1309 50 HOH HOH . 
W 8 HOH A 10 1310 31 HOH HOH . 
W 8 HOH A 11 1311 22 HOH HOH . 
W 8 HOH A 12 1312 44 HOH HOH . 
W 8 HOH A 13 1313 21 HOH HOH . 
W 8 HOH A 14 1314 1 HOH HOH . 
W 8 HOH A 15 1315 53 HOH HOH . 
W 8 HOH A 16 1316 79 HOH HOH . 
W 8 HOH A 17 1317 61 HOH HOH . 
W 8 HOH A 18 1318 68 HOH HOH . 
W 8 HOH A 19 1319 45 HOH HOH . 
W 8 HOH A 20 1320 18 HOH HOH . 
W 8 HOH A 21 1321 16 HOH HOH . 
W 8 HOH A 22 1322 42 HOH HOH . 
W 8 HOH A 23 1323 65 HOH HOH . 
W 8 HOH A 24 1324 23 HOH HOH . 
W 8 HOH A 25 1325 56 HOH HOH . 
W 8 HOH A 26 1326 25 HOH HOH . 
W 8 HOH A 27 1327 47 HOH HOH . 
W 8 HOH A 28 1328 73 HOH HOH . 
W 8 HOH A 29 1329 27 HOH HOH . 
W 8 HOH A 30 1330 60 HOH HOH . 
W 8 HOH A 31 1331 28 HOH HOH . 
W 8 HOH A 32 1332 19 HOH HOH . 
W 8 HOH A 33 1333 20 HOH HOH . 
W 8 HOH A 34 1334 17 HOH HOH . 
W 8 HOH A 35 1335 35 HOH HOH . 
W 8 HOH A 36 1336 15 HOH HOH . 
W 8 HOH A 37 1337 71 HOH HOH . 
W 8 HOH A 38 1338 62 HOH HOH . 
W 8 HOH A 39 1339 40 HOH HOH . 
W 8 HOH A 40 1340 49 HOH HOH . 
W 8 HOH A 41 1341 58 HOH HOH . 
W 8 HOH A 42 1342 34 HOH HOH . 
W 8 HOH A 43 1343 78 HOH HOH . 
W 8 HOH A 44 1344 75 HOH HOH . 
W 8 HOH A 45 1345 81 HOH HOH . 
W 8 HOH A 46 1346 11 HOH HOH . 
W 8 HOH A 47 1347 55 HOH HOH . 
W 8 HOH A 48 1348 33 HOH HOH . 
W 8 HOH A 49 1349 52 HOH HOH . 
W 8 HOH A 50 1350 72 HOH HOH . 
W 8 HOH A 51 1351 66 HOH HOH . 
W 8 HOH A 52 1352 39 HOH HOH . 
W 8 HOH A 53 1353 7 HOH HOH . 
W 8 HOH A 54 1354 70 HOH HOH . 
W 8 HOH A 55 1355 13 HOH HOH . 
W 8 HOH A 56 1356 37 HOH HOH . 
W 8 HOH A 57 1357 74 HOH HOH . 
W 8 HOH A 58 1358 10 HOH HOH . 
W 8 HOH A 59 1359 14 HOH HOH . 
W 8 HOH A 60 1360 57 HOH HOH . 
W 8 HOH A 61 1361 80 HOH HOH . 
W 8 HOH A 62 1362 63 HOH HOH . 
W 8 HOH A 63 1363 69 HOH HOH . 
W 8 HOH A 64 1364 88 HOH HOH . 
W 8 HOH A 65 1365 12 HOH HOH . 
W 8 HOH A 66 1366 87 HOH HOH . 
W 8 HOH A 67 1367 82 HOH HOH . 
W 8 HOH A 68 1368 24 HOH HOH . 
W 8 HOH A 69 1369 36 HOH HOH . 
W 8 HOH A 70 1370 26 HOH HOH . 
W 8 HOH A 71 1371 43 HOH HOH . 
W 8 HOH A 72 1372 30 HOH HOH . 
W 8 HOH A 73 1373 89 HOH HOH . 
W 8 HOH A 74 1374 83 HOH HOH . 
W 8 HOH A 75 1375 2 HOH HOH . 
W 8 HOH A 76 1376 3 HOH HOH . 
W 8 HOH A 77 1377 6 HOH HOH . 
W 8 HOH A 78 1378 9 HOH HOH . 
W 8 HOH A 79 1379 32 HOH HOH . 
W 8 HOH A 80 1380 5 HOH HOH . 
W 8 HOH A 81 1381 86 HOH HOH . 
W 8 HOH A 82 1382 67 HOH HOH . 
W 8 HOH A 83 1383 90 HOH HOH . 
W 8 HOH A 84 1384 76 HOH HOH . 
W 8 HOH A 85 1385 54 HOH HOH . 
W 8 HOH A 86 1386 8 HOH HOH . 
W 8 HOH A 87 1387 64 HOH HOH . 
W 8 HOH A 88 1388 85 HOH HOH . 
W 8 HOH A 89 1389 59 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OLB . . . G 5 2.167 171.008 25.256 1 54.27 ? C1 OLB 1206 A 1 
HETATM 2 C C2 OLB . . . G 5 2.703 172.256 25.888 1 53.57 ? C2 OLB 1206 A 1 
HETATM 3 C C3 OLB . . . G 5 2.794 173.408 24.933 1 53.12 ? C3 OLB 1206 A 1 
HETATM 4 C C4 OLB . . . G 5 3.177 174.709 25.612 1 53.02 ? C4 OLB 1206 A 1 
HETATM 5 C C5 OLB . . . G 5 3.164 175.9 24.688 1 53.23 ? C5 OLB 1206 A 1 
HETATM 6 O O19 OLB . . . G 5 1.639 170.962 24.184 1 54.8 ? O19 OLB 1206 A 1 
HETATM 7 O O20 OLB . . . G 5 2.384 169.929 25.999 1 54.77 ? O20 OLB 1206 A 1 
HETATM 8 C C21 OLB . . . G 5 2.459 168.681 25.275 1 55.3 ? C21 OLB 1206 A 1 
HETATM 9 C C22 OLB . . . G 5 2.021 167.549 26.174 1 55.73 ? C22 OLB 1206 A 1 
HETATM 10 O O23 OLB . . . G 5 0.753 167.879 26.735 1 56.16 ? O23 OLB 1206 A 1 
HETATM 11 C C24 OLB . . . G 5 1.937 166.218 25.459 1 55.85 ? C24 OLB 1206 A 1 
HETATM 12 O O25 OLB . . . G 5 1.337 165.221 26.28 1 56.05 ? O25 OLB 1206 A 1 
HETATM 13 C C6 OLB . . . G 5 3.461 177.219 25.357 1 53.29 ? C6 OLB 1206 A 1 
HETATM 14 C C7 OLB . . . G 5 3.467 178.406 24.402 1 53.36 ? C7 OLB 1206 A 1 
HETATM 15 C C8 OLB . . . G 5 3.673 179.731 25.069 1 53.36 ? C8 OLB 1206 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           347 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           15 
#