data_6ZDY # _model_server_result.job_id VUzqbJPN4_KaIU4CkHsZxw _model_server_result.datetime_utc '2024-11-24 18:01:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zdy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 6ZDY # _exptl.entry_id 6ZDY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125 _cell.angle_gamma 90 _cell.entry_id 6ZDY _cell.length_a 72.84 _cell.length_b 40.62 _cell.length_c 53.09 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZDY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -30.451173 0 43.488782 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 93 A CYS 91 1_555 A SG CYS 113 A CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc1 A NE2 HIS 23 A HIS 21 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? metalc ? metalc2 A O SER 26 A SER 24 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc3 A O GLU 29 A GLU 27 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc4 A O HIS 31 A HIS 29 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc5 A OD1 ASP 33 A ASP 31 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? metalc ? metalc6 A O THR 34 A THR 32 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc7 A OE1 GLU 39 A GLU 37 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc8 A OE2 GLU 39 A GLU 37 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc9 A OE2 GLU 67 A GLU 65 1_555 E ZN ZN . A ZN 204 4_546 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? metalc ? metalc10 A OD1 ASP 70 A ASP 68 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc11 A OD1 ASN 72 A ASN 70 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc12 A OD1 ASP 74 A ASP 72 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc13 A O GLN 76 A GLN 74 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc14 A OE1 GLU 81 A GLU 79 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc15 A OE2 GLU 81 A GLU 79 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc16 A NE2 HIS 94 A HIS 92 1_555 D ZN ZN . A ZN 203 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc17 A NE2 HIS 98 A HIS 96 1_555 D ZN ZN . A ZN 203 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc18 A ND1 HIS 105 A HIS 103 1_555 E ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc19 A NE2 HIS 107 A HIS 105 1_555 E ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc20 A NE2 HIS 109 A HIS 107 1_555 E ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc21 B CA CA . A CA 201 1_555 G O HOH . A HOH 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc22 C CA CA . A CA 202 1_555 G O HOH . A HOH 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6ZDY _atom_sites.fract_transf_matrix[1][1] 0.013729 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009613 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024618 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022994 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 201 1 CA CA . C 2 CA A 1 202 2 CA CA . D 3 ZN A 1 203 1 ZN ZN . E 3 ZN A 1 204 2 ZN ZN . F 4 SO4 A 1 205 1 SO4 SO4 . G 5 HOH A 1 301 66 HOH HOH . G 5 HOH A 2 302 54 HOH HOH . G 5 HOH A 3 303 77 HOH HOH . G 5 HOH A 4 304 14 HOH HOH . G 5 HOH A 5 305 84 HOH HOH . G 5 HOH A 6 306 53 HOH HOH . G 5 HOH A 7 307 48 HOH HOH . G 5 HOH A 8 308 23 HOH HOH . G 5 HOH A 9 309 35 HOH HOH . G 5 HOH A 10 310 31 HOH HOH . G 5 HOH A 11 311 40 HOH HOH . G 5 HOH A 12 312 1 HOH HOH . G 5 HOH A 13 313 93 HOH HOH . G 5 HOH A 14 314 21 HOH HOH . G 5 HOH A 15 315 15 HOH HOH . G 5 HOH A 16 316 27 HOH HOH . G 5 HOH A 17 317 28 HOH HOH . G 5 HOH A 18 318 20 HOH HOH . G 5 HOH A 19 319 85 HOH HOH . G 5 HOH A 20 320 95 HOH HOH . G 5 HOH A 21 321 5 HOH HOH . G 5 HOH A 22 322 26 HOH HOH . G 5 HOH A 23 323 2 HOH HOH . G 5 HOH A 24 324 39 HOH HOH . G 5 HOH A 25 325 22 HOH HOH . G 5 HOH A 26 326 16 HOH HOH . G 5 HOH A 27 327 76 HOH HOH . G 5 HOH A 28 328 7 HOH HOH . G 5 HOH A 29 329 72 HOH HOH . G 5 HOH A 30 330 4 HOH HOH . G 5 HOH A 31 331 24 HOH HOH . G 5 HOH A 32 332 6 HOH HOH . G 5 HOH A 33 333 30 HOH HOH . G 5 HOH A 34 334 64 HOH HOH . G 5 HOH A 35 335 38 HOH HOH . G 5 HOH A 36 336 13 HOH HOH . G 5 HOH A 37 337 52 HOH HOH . G 5 HOH A 38 338 37 HOH HOH . G 5 HOH A 39 339 9 HOH HOH . G 5 HOH A 40 340 8 HOH HOH . G 5 HOH A 41 341 34 HOH HOH . G 5 HOH A 42 342 18 HOH HOH . G 5 HOH A 43 343 45 HOH HOH . G 5 HOH A 44 344 25 HOH HOH . G 5 HOH A 45 345 65 HOH HOH . G 5 HOH A 46 346 19 HOH HOH . G 5 HOH A 47 347 91 HOH HOH . G 5 HOH A 48 348 92 HOH HOH . G 5 HOH A 49 349 49 HOH HOH . G 5 HOH A 50 350 36 HOH HOH . G 5 HOH A 51 351 51 HOH HOH . G 5 HOH A 52 352 96 HOH HOH . G 5 HOH A 53 353 62 HOH HOH . G 5 HOH A 54 354 33 HOH HOH . G 5 HOH A 55 355 12 HOH HOH . G 5 HOH A 56 356 3 HOH HOH . G 5 HOH A 57 357 78 HOH HOH . G 5 HOH A 58 358 29 HOH HOH . G 5 HOH A 59 359 55 HOH HOH . G 5 HOH A 60 360 82 HOH HOH . G 5 HOH A 61 361 50 HOH HOH . G 5 HOH A 62 362 17 HOH HOH . G 5 HOH A 63 363 89 HOH HOH . G 5 HOH A 64 364 46 HOH HOH . G 5 HOH A 65 365 75 HOH HOH . G 5 HOH A 66 366 63 HOH HOH . G 5 HOH A 67 367 68 HOH HOH . G 5 HOH A 68 368 58 HOH HOH . G 5 HOH A 69 369 79 HOH HOH . G 5 HOH A 70 370 11 HOH HOH . G 5 HOH A 71 371 88 HOH HOH . G 5 HOH A 72 372 10 HOH HOH . G 5 HOH A 73 373 69 HOH HOH . G 5 HOH A 74 374 86 HOH HOH . G 5 HOH A 75 375 42 HOH HOH . G 5 HOH A 76 376 60 HOH HOH . G 5 HOH A 77 377 67 HOH HOH . G 5 HOH A 78 378 81 HOH HOH . G 5 HOH A 79 379 32 HOH HOH . G 5 HOH A 80 380 44 HOH HOH . G 5 HOH A 81 381 97 HOH HOH . G 5 HOH A 82 382 94 HOH HOH . G 5 HOH A 83 383 70 HOH HOH . G 5 HOH A 84 384 74 HOH HOH . G 5 HOH A 85 385 59 HOH HOH . G 5 HOH A 86 386 90 HOH HOH . G 5 HOH A 87 387 61 HOH HOH . G 5 HOH A 88 388 71 HOH HOH . G 5 HOH A 89 389 41 HOH HOH . G 5 HOH A 90 390 73 HOH HOH . G 5 HOH A 91 391 56 HOH HOH . G 5 HOH A 92 392 43 HOH HOH . G 5 HOH A 93 393 57 HOH HOH . G 5 HOH A 94 394 83 HOH HOH . G 5 HOH A 95 395 87 HOH HOH . G 5 HOH A 96 396 80 HOH HOH . G 5 HOH A 97 397 47 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -21.489 _atom_site.Cartn_y -2.92 _atom_site.Cartn_z 8.393 _atom_site.occupancy 0.77 _atom_site.B_iso_or_equiv 26.09 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 209 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #