data_6ZE1 # _model_server_result.job_id 8SG5tvk_xcwNCW5XhpKNYQ _model_server_result.datetime_utc '2024-11-20 02:23:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ze1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 6ZE1 # _exptl.entry_id 6ZE1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZE1 _cell.length_a 126.949 _cell.length_b 126.949 _cell.length_c 117.429 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZE1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6ZE1 _atom_sites.fract_transf_matrix[1][1] 0.007877 _atom_sites.fract_transf_matrix[1][2] 0.004548 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009096 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008516 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ATP A 1 701 701 ATP ATP . D 4 EDO A 1 702 801 EDO EDO . E 4 EDO A 1 703 901 EDO EDO . F 4 EDO B 1 201 201 EDO EDO . G 5 GOL B 1 202 1 GOL GOL . H 6 HOH A 1 801 46 HOH HOH . H 6 HOH A 2 802 49 HOH HOH . H 6 HOH A 3 803 43 HOH HOH . H 6 HOH A 4 804 5 HOH HOH . H 6 HOH A 5 805 45 HOH HOH . H 6 HOH A 6 806 4 HOH HOH . H 6 HOH A 7 807 34 HOH HOH . H 6 HOH A 8 808 8 HOH HOH . H 6 HOH A 9 809 44 HOH HOH . H 6 HOH A 10 810 12 HOH HOH . H 6 HOH A 11 811 22 HOH HOH . H 6 HOH A 12 812 48 HOH HOH . H 6 HOH A 13 813 15 HOH HOH . H 6 HOH A 14 814 24 HOH HOH . H 6 HOH A 15 815 7 HOH HOH . H 6 HOH A 16 816 40 HOH HOH . H 6 HOH A 17 817 41 HOH HOH . H 6 HOH A 18 818 25 HOH HOH . H 6 HOH A 19 819 36 HOH HOH . H 6 HOH A 20 820 42 HOH HOH . H 6 HOH A 21 821 18 HOH HOH . H 6 HOH A 22 822 30 HOH HOH . H 6 HOH A 23 823 33 HOH HOH . I 6 HOH B 1 301 27 HOH HOH . I 6 HOH B 2 302 10 HOH HOH . I 6 HOH B 3 303 32 HOH HOH . I 6 HOH B 4 304 21 HOH HOH . I 6 HOH B 5 305 16 HOH HOH . I 6 HOH B 6 306 37 HOH HOH . I 6 HOH B 7 307 29 HOH HOH . I 6 HOH B 8 308 3 HOH HOH . I 6 HOH B 9 309 26 HOH HOH . I 6 HOH B 10 310 1 HOH HOH . I 6 HOH B 11 311 39 HOH HOH . I 6 HOH B 12 312 19 HOH HOH . I 6 HOH B 13 313 2 HOH HOH . I 6 HOH B 14 314 38 HOH HOH . I 6 HOH B 15 315 35 HOH HOH . I 6 HOH B 16 316 31 HOH HOH . I 6 HOH B 17 317 20 HOH HOH . I 6 HOH B 18 318 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 3 65.845 -5.249 26.413 1 136.67 ? PG ATP 701 A 1 HETATM 2 O O1G ATP . . . C 3 65.946 -5.376 24.901 1 136.44 ? O1G ATP 701 A 1 HETATM 3 O O2G ATP . . . C 3 67.159 -4.943 27.031 1 137.21 ? O2G ATP 701 A 1 HETATM 4 O O3G ATP . . . C 3 65.231 -6.524 26.965 1 136.58 ? O3G ATP 701 A 1 HETATM 5 P PB ATP . . . C 3 63.681 -3.353 25.832 1 136.27 ? PB ATP 701 A 1 HETATM 6 O O1B ATP . . . C 3 64.393 -2.322 24.966 1 136.19 ? O1B ATP 701 A 1 HETATM 7 O O2B ATP . . . C 3 62.915 -4.339 25.051 1 135.83 ? O2B ATP 701 A 1 HETATM 8 O O3B ATP . . . C 3 64.775 -4.105 26.713 1 136.71 ? O3B ATP 701 A 1 HETATM 9 P PA ATP . . . C 3 61.17 -2.903 27.181 1 137.31 ? PA ATP 701 A 1 HETATM 10 O O1A ATP . . . C 3 60.456 -3.614 26.035 1 136.89 ? O1A ATP 701 A 1 HETATM 11 O O2A ATP . . . C 3 61.199 -3.79 28.363 1 137.88 ? O2A ATP 701 A 1 HETATM 12 O O3A ATP . . . C 3 62.656 -2.548 26.74 1 136.98 ? O3A ATP 701 A 1 HETATM 13 O O5' ATP . . . C 3 60.44 -1.522 27.518 1 137.66 ? O5' ATP 701 A 1 HETATM 14 C C5' ATP . . . C 3 60.607 -0.923 28.815 1 138.09 ? C5' ATP 701 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 186 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 443 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #