data_6ZEF
#
_model_server_result.job_id            iiC8D7z2fOmIqwkZVL4_Ug 
_model_server_result.datetime_utc      '2024-12-25 18:20:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zef 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":407}' 
#
_entry.id    6ZEF 
#
_exptl.entry_id    6ZEF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         78.076 
_cell.angle_beta          74.673 
_cell.angle_gamma         81.66 
_cell.entry_id            6ZEF 
_cell.length_a            47.51 
_cell.length_b            57.55 
_cell.length_c            89.614 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZEF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H,I,J,K,Q,R,T 1 1 
B,D,L,M,N,O,P,S,U 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 J N N 
? 5 K N N 
? 5 O N N 
? 5 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 91 A ASP 92 1_555 J MN MN . A MN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? 
metalc ? metalc2 A ND1 HIS 247 A HIS 248 1_555 J MN MN . A MN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? 
metalc ? metalc3 J MN MN . A MN 406 1_555 R O HOH . A HOH 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc4 K MN MN . A MN 407 1_555 R O HOH . A HOH 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc5 B OD2 ASP 91 B ASP 92 1_555 O MN MN . B MN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? 
metalc ? metalc6 B OD1 ASN 123 B ASN 124 1_555 O MN MN . B MN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? 
metalc ? metalc7 B ND1 HIS 247 B HIS 248 1_555 O MN MN . B MN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? 
metalc ? metalc8 O MN MN . B MN 404 1_555 S O HOH . B HOH 591 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? 
metalc ? metalc9 P MN MN . B MN 405 1_555 S O HOH . B HOH 591 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6ZEF 
_atom_sites.fract_transf_matrix[1][1]    0.021048 
_atom_sites.fract_transf_matrix[1][2]    -0.003086 
_atom_sites.fract_transf_matrix[1][3]    -0.005308 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017562 
_atom_sites.fract_transf_matrix[2][3]    -0.003146 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011755 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 EDO A 1 401 1 EDO EDO . 
F 3 EDO A 1 402 2 EDO EDO . 
G 3 EDO A 1 403 3 EDO EDO . 
H 3 EDO A 1 404 4 EDO EDO . 
I 4 CL A 1 405 1 CL CL . 
J 5 MN A 1 406 1 MN MN . 
K 5 MN A 1 407 2 MN MN . 
L 3 EDO B 1 401 6 EDO EDO . 
M 3 EDO B 1 402 7 EDO EDO . 
N 3 EDO B 1 403 8 EDO EDO . 
O 5 MN B 1 404 3 MN MN . 
P 5 MN B 1 405 4 MN MN . 
Q 3 EDO C 1 601 5 EDO EDO . 
R 6 HOH A 1 501 196 HOH HOH . 
R 6 HOH A 2 502 108 HOH HOH . 
R 6 HOH A 3 503 77 HOH HOH . 
R 6 HOH A 4 504 49 HOH HOH . 
R 6 HOH A 5 505 119 HOH HOH . 
R 6 HOH A 6 506 202 HOH HOH . 
R 6 HOH A 7 507 111 HOH HOH . 
R 6 HOH A 8 508 157 HOH HOH . 
R 6 HOH A 9 509 85 HOH HOH . 
R 6 HOH A 10 510 68 HOH HOH . 
R 6 HOH A 11 511 48 HOH HOH . 
R 6 HOH A 12 512 58 HOH HOH . 
R 6 HOH A 13 513 61 HOH HOH . 
R 6 HOH A 14 514 16 HOH HOH . 
R 6 HOH A 15 515 65 HOH HOH . 
R 6 HOH A 16 516 187 HOH HOH . 
R 6 HOH A 17 517 92 HOH HOH . 
R 6 HOH A 18 518 29 HOH HOH . 
R 6 HOH A 19 519 73 HOH HOH . 
R 6 HOH A 20 520 80 HOH HOH . 
R 6 HOH A 21 521 87 HOH HOH . 
R 6 HOH A 22 522 33 HOH HOH . 
R 6 HOH A 23 523 125 HOH HOH . 
R 6 HOH A 24 524 60 HOH HOH . 
R 6 HOH A 25 525 31 HOH HOH . 
R 6 HOH A 26 526 169 HOH HOH . 
R 6 HOH A 27 527 165 HOH HOH . 
R 6 HOH A 28 528 30 HOH HOH . 
R 6 HOH A 29 529 17 HOH HOH . 
R 6 HOH A 30 530 152 HOH HOH . 
R 6 HOH A 31 531 12 HOH HOH . 
R 6 HOH A 32 532 102 HOH HOH . 
R 6 HOH A 33 533 46 HOH HOH . 
R 6 HOH A 34 534 135 HOH HOH . 
R 6 HOH A 35 535 150 HOH HOH . 
R 6 HOH A 36 536 163 HOH HOH . 
R 6 HOH A 37 537 71 HOH HOH . 
R 6 HOH A 38 538 91 HOH HOH . 
R 6 HOH A 39 539 90 HOH HOH . 
R 6 HOH A 40 540 79 HOH HOH . 
R 6 HOH A 41 541 97 HOH HOH . 
R 6 HOH A 42 542 70 HOH HOH . 
R 6 HOH A 43 543 69 HOH HOH . 
R 6 HOH A 44 544 162 HOH HOH . 
R 6 HOH A 45 545 24 HOH HOH . 
R 6 HOH A 46 546 98 HOH HOH . 
R 6 HOH A 47 547 181 HOH HOH . 
R 6 HOH A 48 548 64 HOH HOH . 
R 6 HOH A 49 549 62 HOH HOH . 
R 6 HOH A 50 550 148 HOH HOH . 
R 6 HOH A 51 551 81 HOH HOH . 
R 6 HOH A 52 552 101 HOH HOH . 
R 6 HOH A 53 553 182 HOH HOH . 
R 6 HOH A 54 554 168 HOH HOH . 
R 6 HOH A 55 555 32 HOH HOH . 
R 6 HOH A 56 556 86 HOH HOH . 
R 6 HOH A 57 557 145 HOH HOH . 
R 6 HOH A 58 558 126 HOH HOH . 
R 6 HOH A 59 559 143 HOH HOH . 
R 6 HOH A 60 560 186 HOH HOH . 
R 6 HOH A 61 561 99 HOH HOH . 
R 6 HOH A 62 562 146 HOH HOH . 
R 6 HOH A 63 563 59 HOH HOH . 
R 6 HOH A 64 564 170 HOH HOH . 
R 6 HOH A 65 565 141 HOH HOH . 
R 6 HOH A 66 566 57 HOH HOH . 
R 6 HOH A 67 567 67 HOH HOH . 
R 6 HOH A 68 568 159 HOH HOH . 
R 6 HOH A 69 569 190 HOH HOH . 
R 6 HOH A 70 570 133 HOH HOH . 
R 6 HOH A 71 571 161 HOH HOH . 
R 6 HOH A 72 572 95 HOH HOH . 
R 6 HOH A 73 573 195 HOH HOH . 
R 6 HOH A 74 574 45 HOH HOH . 
R 6 HOH A 75 575 139 HOH HOH . 
R 6 HOH A 76 576 142 HOH HOH . 
R 6 HOH A 77 577 137 HOH HOH . 
R 6 HOH A 78 578 149 HOH HOH . 
R 6 HOH A 79 579 100 HOH HOH . 
R 6 HOH A 80 580 166 HOH HOH . 
R 6 HOH A 81 581 185 HOH HOH . 
R 6 HOH A 82 582 193 HOH HOH . 
R 6 HOH A 83 583 94 HOH HOH . 
R 6 HOH A 84 584 96 HOH HOH . 
R 6 HOH A 85 585 82 HOH HOH . 
R 6 HOH A 86 586 178 HOH HOH . 
R 6 HOH A 87 587 198 HOH HOH . 
R 6 HOH A 88 588 84 HOH HOH . 
R 6 HOH A 89 589 127 HOH HOH . 
R 6 HOH A 90 590 83 HOH HOH . 
R 6 HOH A 91 591 180 HOH HOH . 
R 6 HOH A 92 592 74 HOH HOH . 
R 6 HOH A 93 593 243 HOH HOH . 
R 6 HOH A 94 594 233 HOH HOH . 
R 6 HOH A 95 595 234 HOH HOH . 
S 6 HOH B 1 501 41 HOH HOH . 
S 6 HOH B 2 502 104 HOH HOH . 
S 6 HOH B 3 503 238 HOH HOH . 
S 6 HOH B 4 504 164 HOH HOH . 
S 6 HOH B 5 505 194 HOH HOH . 
S 6 HOH B 6 506 213 HOH HOH . 
S 6 HOH B 7 507 13 HOH HOH . 
S 6 HOH B 8 508 22 HOH HOH . 
S 6 HOH B 9 509 220 HOH HOH . 
S 6 HOH B 10 510 115 HOH HOH . 
S 6 HOH B 11 511 75 HOH HOH . 
S 6 HOH B 12 512 188 HOH HOH . 
S 6 HOH B 13 513 26 HOH HOH . 
S 6 HOH B 14 514 3 HOH HOH . 
S 6 HOH B 15 515 153 HOH HOH . 
S 6 HOH B 16 516 51 HOH HOH . 
S 6 HOH B 17 517 15 HOH HOH . 
S 6 HOH B 18 518 78 HOH HOH . 
S 6 HOH B 19 519 44 HOH HOH . 
S 6 HOH B 20 520 204 HOH HOH . 
S 6 HOH B 21 521 2 HOH HOH . 
S 6 HOH B 22 522 18 HOH HOH . 
S 6 HOH B 23 523 27 HOH HOH . 
S 6 HOH B 24 524 114 HOH HOH . 
S 6 HOH B 25 525 20 HOH HOH . 
S 6 HOH B 26 526 7 HOH HOH . 
S 6 HOH B 27 527 23 HOH HOH . 
S 6 HOH B 28 528 172 HOH HOH . 
S 6 HOH B 29 529 103 HOH HOH . 
S 6 HOH B 30 530 10 HOH HOH . 
S 6 HOH B 31 531 36 HOH HOH . 
S 6 HOH B 32 532 28 HOH HOH . 
S 6 HOH B 33 533 55 HOH HOH . 
S 6 HOH B 34 534 53 HOH HOH . 
S 6 HOH B 35 535 37 HOH HOH . 
S 6 HOH B 36 536 167 HOH HOH . 
S 6 HOH B 37 537 106 HOH HOH . 
S 6 HOH B 38 538 175 HOH HOH . 
S 6 HOH B 39 539 236 HOH HOH . 
S 6 HOH B 40 540 14 HOH HOH . 
S 6 HOH B 41 541 1 HOH HOH . 
S 6 HOH B 42 542 4 HOH HOH . 
S 6 HOH B 43 543 35 HOH HOH . 
S 6 HOH B 44 544 109 HOH HOH . 
S 6 HOH B 45 545 52 HOH HOH . 
S 6 HOH B 46 546 138 HOH HOH . 
S 6 HOH B 47 547 183 HOH HOH . 
S 6 HOH B 48 548 151 HOH HOH . 
S 6 HOH B 49 549 40 HOH HOH . 
S 6 HOH B 50 550 131 HOH HOH . 
S 6 HOH B 51 551 50 HOH HOH . 
S 6 HOH B 52 552 134 HOH HOH . 
S 6 HOH B 53 553 9 HOH HOH . 
S 6 HOH B 54 554 156 HOH HOH . 
S 6 HOH B 55 555 8 HOH HOH . 
S 6 HOH B 56 556 241 HOH HOH . 
S 6 HOH B 57 557 25 HOH HOH . 
S 6 HOH B 58 558 144 HOH HOH . 
S 6 HOH B 59 559 39 HOH HOH . 
S 6 HOH B 60 560 6 HOH HOH . 
S 6 HOH B 61 561 210 HOH HOH . 
S 6 HOH B 62 562 21 HOH HOH . 
S 6 HOH B 63 563 116 HOH HOH . 
S 6 HOH B 64 564 221 HOH HOH . 
S 6 HOH B 65 565 128 HOH HOH . 
S 6 HOH B 66 566 191 HOH HOH . 
S 6 HOH B 67 567 184 HOH HOH . 
S 6 HOH B 68 568 123 HOH HOH . 
S 6 HOH B 69 569 239 HOH HOH . 
S 6 HOH B 70 570 176 HOH HOH . 
S 6 HOH B 71 571 224 HOH HOH . 
S 6 HOH B 72 572 177 HOH HOH . 
S 6 HOH B 73 573 105 HOH HOH . 
S 6 HOH B 74 574 214 HOH HOH . 
S 6 HOH B 75 575 42 HOH HOH . 
S 6 HOH B 76 576 118 HOH HOH . 
S 6 HOH B 77 577 19 HOH HOH . 
S 6 HOH B 78 578 235 HOH HOH . 
S 6 HOH B 79 579 211 HOH HOH . 
S 6 HOH B 80 580 216 HOH HOH . 
S 6 HOH B 81 581 117 HOH HOH . 
S 6 HOH B 82 582 218 HOH HOH . 
S 6 HOH B 83 583 113 HOH HOH . 
S 6 HOH B 84 584 38 HOH HOH . 
S 6 HOH B 85 585 174 HOH HOH . 
S 6 HOH B 86 586 5 HOH HOH . 
S 6 HOH B 87 587 208 HOH HOH . 
S 6 HOH B 88 588 179 HOH HOH . 
S 6 HOH B 89 589 155 HOH HOH . 
S 6 HOH B 90 590 209 HOH HOH . 
S 6 HOH B 91 591 107 HOH HOH . 
S 6 HOH B 92 592 76 HOH HOH . 
S 6 HOH B 93 593 201 HOH HOH . 
S 6 HOH B 94 594 171 HOH HOH . 
S 6 HOH B 95 595 110 HOH HOH . 
S 6 HOH B 96 596 237 HOH HOH . 
S 6 HOH B 97 597 242 HOH HOH . 
S 6 HOH B 98 598 158 HOH HOH . 
S 6 HOH B 99 599 132 HOH HOH . 
S 6 HOH B 100 600 54 HOH HOH . 
S 6 HOH B 101 601 154 HOH HOH . 
S 6 HOH B 102 602 124 HOH HOH . 
S 6 HOH B 103 603 230 HOH HOH . 
S 6 HOH B 104 604 200 HOH HOH . 
S 6 HOH B 105 605 112 HOH HOH . 
S 6 HOH B 106 606 197 HOH HOH . 
S 6 HOH B 107 607 206 HOH HOH . 
S 6 HOH B 108 608 232 HOH HOH . 
S 6 HOH B 109 609 227 HOH HOH . 
S 6 HOH B 110 610 147 HOH HOH . 
S 6 HOH B 111 611 43 HOH HOH . 
S 6 HOH B 112 612 223 HOH HOH . 
S 6 HOH B 113 613 240 HOH HOH . 
S 6 HOH B 114 614 212 HOH HOH . 
S 6 HOH B 115 615 207 HOH HOH . 
S 6 HOH B 116 616 192 HOH HOH . 
S 6 HOH B 117 617 199 HOH HOH . 
S 6 HOH B 118 618 217 HOH HOH . 
S 6 HOH B 119 619 203 HOH HOH . 
S 6 HOH B 120 620 215 HOH HOH . 
S 6 HOH B 121 621 222 HOH HOH . 
S 6 HOH B 122 622 231 HOH HOH . 
T 6 HOH C 1 701 93 HOH HOH . 
T 6 HOH C 2 702 56 HOH HOH . 
T 6 HOH C 3 703 66 HOH HOH . 
T 6 HOH C 4 704 140 HOH HOH . 
T 6 HOH C 5 705 88 HOH HOH . 
T 6 HOH C 6 706 189 HOH HOH . 
T 6 HOH C 7 707 173 HOH HOH . 
T 6 HOH C 8 708 160 HOH HOH . 
T 6 HOH C 9 709 63 HOH HOH . 
T 6 HOH C 10 710 130 HOH HOH . 
T 6 HOH C 11 711 129 HOH HOH . 
T 6 HOH C 12 712 72 HOH HOH . 
T 6 HOH C 13 713 244 HOH HOH . 
T 6 HOH C 14 714 120 HOH HOH . 
T 6 HOH C 15 715 245 HOH HOH . 
U 6 HOH D 1 601 122 HOH HOH . 
U 6 HOH D 2 602 219 HOH HOH . 
U 6 HOH D 3 603 228 HOH HOH . 
U 6 HOH D 4 604 11 HOH HOH . 
U 6 HOH D 5 605 225 HOH HOH . 
U 6 HOH D 6 606 136 HOH HOH . 
U 6 HOH D 7 607 121 HOH HOH . 
U 6 HOH D 8 608 229 HOH HOH . 
U 6 HOH D 9 609 226 HOH HOH . 
U 6 HOH D 10 610 205 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         K 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               18.941 
_atom_site.Cartn_y               32.26 
_atom_site.Cartn_z               -4.545 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        93.01 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           407 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           1 
#