data_6ZEL
#
_model_server_result.job_id            bI5oqNRJ4EDCkcC6P1d7Fw 
_model_server_result.datetime_utc      '2024-11-22 21:00:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zel 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":604}' 
#
_entry.id    6ZEL 
#
_exptl.entry_id    6ZEL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              235.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3,5-dimethyl-4-[(6-methylpyrimidin-4-yl)sulfanylmethyl]-1,2-oxazole 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6ZEL 
_cell.length_a            37.235 
_cell.length_b            44.141 
_cell.length_c            78.441 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZEL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C11 H13 N3 O S' 
_chem_comp.formula_weight    235.305 
_chem_comp.id                QGQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3,5-dimethyl-4-[(6-methylpyrimidin-4-yl)sulfanylmethyl]-1,2-oxazole 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 QGQ sing 286 n n 
N2 C1 QGQ doub 287 n y 
N2 C10 QGQ sing 288 n y 
C1 C2 QGQ sing 289 n y 
C10 N1 QGQ doub 290 n y 
C2 C3 QGQ doub 291 n y 
N1 C3 QGQ sing 292 n y 
C3 S QGQ sing 293 n n 
C9 C8 QGQ sing 294 n n 
C8 O QGQ sing 295 n y 
C8 C5 QGQ doub 296 n y 
O N QGQ sing 297 n y 
S C4 QGQ sing 298 n n 
C5 C4 QGQ sing 299 n n 
C5 C6 QGQ sing 300 n y 
N C6 QGQ doub 301 n y 
C6 C7 QGQ sing 302 n n 
C4 H1 QGQ sing 303 n n 
C4 H2 QGQ sing 304 n n 
C7 H3 QGQ sing 305 n n 
C7 H4 QGQ sing 306 n n 
C7 H5 QGQ sing 307 n n 
C10 H6 QGQ sing 308 n n 
C9 H7 QGQ sing 309 n n 
C9 H8 QGQ sing 310 n n 
C9 H9 QGQ sing 311 n n 
C2 H10 QGQ sing 312 n n 
C H11 QGQ sing 313 n n 
C H12 QGQ sing 314 n n 
C H13 QGQ sing 315 n n 
#
_atom_sites.entry_id                     6ZEL 
_atom_sites.fract_transf_matrix[1][1]    0.026856 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022655 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012748 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO AAA 1 601 601 EDO EDO . 
C 2 EDO AAA 1 602 701 EDO EDO . 
D 2 EDO AAA 1 603 801 EDO EDO . 
E 3 QGQ AAA 1 604 901 QGQ LIG . 
F 4 HOH AAA 1 701 396 HOH HOH . 
F 4 HOH AAA 2 702 378 HOH HOH . 
F 4 HOH AAA 3 703 488 HOH HOH . 
F 4 HOH AAA 4 704 323 HOH HOH . 
F 4 HOH AAA 5 705 2 HOH HOH . 
F 4 HOH AAA 6 706 357 HOH HOH . 
F 4 HOH AAA 7 707 403 HOH HOH . 
F 4 HOH AAA 8 708 430 HOH HOH . 
F 4 HOH AAA 9 709 380 HOH HOH . 
F 4 HOH AAA 10 710 431 HOH HOH . 
F 4 HOH AAA 11 711 454 HOH HOH . 
F 4 HOH AAA 12 712 316 HOH HOH . 
F 4 HOH AAA 13 713 481 HOH HOH . 
F 4 HOH AAA 14 714 333 HOH HOH . 
F 4 HOH AAA 15 715 456 HOH HOH . 
F 4 HOH AAA 16 716 311 HOH HOH . 
F 4 HOH AAA 17 717 379 HOH HOH . 
F 4 HOH AAA 18 718 474 HOH HOH . 
F 4 HOH AAA 19 719 326 HOH HOH . 
F 4 HOH AAA 20 720 337 HOH HOH . 
F 4 HOH AAA 21 721 445 HOH HOH . 
F 4 HOH AAA 22 722 362 HOH HOH . 
F 4 HOH AAA 23 723 389 HOH HOH . 
F 4 HOH AAA 24 724 443 HOH HOH . 
F 4 HOH AAA 25 725 335 HOH HOH . 
F 4 HOH AAA 26 726 361 HOH HOH . 
F 4 HOH AAA 27 727 306 HOH HOH . 
F 4 HOH AAA 28 728 432 HOH HOH . 
F 4 HOH AAA 29 729 453 HOH HOH . 
F 4 HOH AAA 30 730 377 HOH HOH . 
F 4 HOH AAA 31 731 355 HOH HOH . 
F 4 HOH AAA 32 732 322 HOH HOH . 
F 4 HOH AAA 33 733 464 HOH HOH . 
F 4 HOH AAA 34 734 394 HOH HOH . 
F 4 HOH AAA 35 735 402 HOH HOH . 
F 4 HOH AAA 36 736 440 HOH HOH . 
F 4 HOH AAA 37 737 490 HOH HOH . 
F 4 HOH AAA 38 738 319 HOH HOH . 
F 4 HOH AAA 39 739 325 HOH HOH . 
F 4 HOH AAA 40 740 343 HOH HOH . 
F 4 HOH AAA 41 741 420 HOH HOH . 
F 4 HOH AAA 42 742 428 HOH HOH . 
F 4 HOH AAA 43 743 332 HOH HOH . 
F 4 HOH AAA 44 744 368 HOH HOH . 
F 4 HOH AAA 45 745 324 HOH HOH . 
F 4 HOH AAA 46 746 327 HOH HOH . 
F 4 HOH AAA 47 747 491 HOH HOH . 
F 4 HOH AAA 48 748 315 HOH HOH . 
F 4 HOH AAA 49 749 385 HOH HOH . 
F 4 HOH AAA 50 750 369 HOH HOH . 
F 4 HOH AAA 51 751 4 HOH HOH . 
F 4 HOH AAA 52 752 310 HOH HOH . 
F 4 HOH AAA 53 753 320 HOH HOH . 
F 4 HOH AAA 54 754 318 HOH HOH . 
F 4 HOH AAA 55 755 365 HOH HOH . 
F 4 HOH AAA 56 756 391 HOH HOH . 
F 4 HOH AAA 57 757 475 HOH HOH . 
F 4 HOH AAA 58 758 392 HOH HOH . 
F 4 HOH AAA 59 759 301 HOH HOH . 
F 4 HOH AAA 60 760 353 HOH HOH . 
F 4 HOH AAA 61 761 6 HOH HOH . 
F 4 HOH AAA 62 762 367 HOH HOH . 
F 4 HOH AAA 63 763 363 HOH HOH . 
F 4 HOH AAA 64 764 321 HOH HOH . 
F 4 HOH AAA 65 765 346 HOH HOH . 
F 4 HOH AAA 66 766 312 HOH HOH . 
F 4 HOH AAA 67 767 381 HOH HOH . 
F 4 HOH AAA 68 768 349 HOH HOH . 
F 4 HOH AAA 69 769 348 HOH HOH . 
F 4 HOH AAA 70 770 309 HOH HOH . 
F 4 HOH AAA 71 771 429 HOH HOH . 
F 4 HOH AAA 72 772 373 HOH HOH . 
F 4 HOH AAA 73 773 404 HOH HOH . 
F 4 HOH AAA 74 774 383 HOH HOH . 
F 4 HOH AAA 75 775 339 HOH HOH . 
F 4 HOH AAA 76 776 359 HOH HOH . 
F 4 HOH AAA 77 777 482 HOH HOH . 
F 4 HOH AAA 78 778 413 HOH HOH . 
F 4 HOH AAA 79 779 468 HOH HOH . 
F 4 HOH AAA 80 780 472 HOH HOH . 
F 4 HOH AAA 81 781 364 HOH HOH . 
F 4 HOH AAA 82 782 374 HOH HOH . 
F 4 HOH AAA 83 783 360 HOH HOH . 
F 4 HOH AAA 84 784 444 HOH HOH . 
F 4 HOH AAA 85 785 439 HOH HOH . 
F 4 HOH AAA 86 786 470 HOH HOH . 
F 4 HOH AAA 87 787 314 HOH HOH . 
F 4 HOH AAA 88 788 305 HOH HOH . 
F 4 HOH AAA 89 789 341 HOH HOH . 
F 4 HOH AAA 90 790 358 HOH HOH . 
F 4 HOH AAA 91 791 307 HOH HOH . 
F 4 HOH AAA 92 792 331 HOH HOH . 
F 4 HOH AAA 93 793 384 HOH HOH . 
F 4 HOH AAA 94 794 397 HOH HOH . 
F 4 HOH AAA 95 795 329 HOH HOH . 
F 4 HOH AAA 96 796 435 HOH HOH . 
F 4 HOH AAA 97 797 302 HOH HOH . 
F 4 HOH AAA 98 798 436 HOH HOH . 
F 4 HOH AAA 99 799 423 HOH HOH . 
F 4 HOH AAA 100 800 308 HOH HOH . 
F 4 HOH AAA 101 801 477 HOH HOH . 
F 4 HOH AAA 102 802 334 HOH HOH . 
F 4 HOH AAA 103 803 366 HOH HOH . 
F 4 HOH AAA 104 804 347 HOH HOH . 
F 4 HOH AAA 105 805 342 HOH HOH . 
F 4 HOH AAA 106 806 426 HOH HOH . 
F 4 HOH AAA 107 807 467 HOH HOH . 
F 4 HOH AAA 108 808 313 HOH HOH . 
F 4 HOH AAA 109 809 427 HOH HOH . 
F 4 HOH AAA 110 810 338 HOH HOH . 
F 4 HOH AAA 111 811 345 HOH HOH . 
F 4 HOH AAA 112 812 344 HOH HOH . 
F 4 HOH AAA 113 813 414 HOH HOH . 
F 4 HOH AAA 114 814 461 HOH HOH . 
F 4 HOH AAA 115 815 5 HOH HOH . 
F 4 HOH AAA 116 816 317 HOH HOH . 
F 4 HOH AAA 117 817 336 HOH HOH . 
F 4 HOH AAA 118 818 405 HOH HOH . 
F 4 HOH AAA 119 819 303 HOH HOH . 
F 4 HOH AAA 120 820 434 HOH HOH . 
F 4 HOH AAA 121 821 372 HOH HOH . 
F 4 HOH AAA 122 822 304 HOH HOH . 
F 4 HOH AAA 123 823 480 HOH HOH . 
F 4 HOH AAA 124 824 13 HOH HOH . 
F 4 HOH AAA 125 825 375 HOH HOH . 
F 4 HOH AAA 126 826 425 HOH HOH . 
F 4 HOH AAA 127 827 449 HOH HOH . 
F 4 HOH AAA 128 828 422 HOH HOH . 
F 4 HOH AAA 129 829 412 HOH HOH . 
F 4 HOH AAA 130 830 350 HOH HOH . 
F 4 HOH AAA 131 831 388 HOH HOH . 
F 4 HOH AAA 132 832 10 HOH HOH . 
F 4 HOH AAA 133 833 485 HOH HOH . 
F 4 HOH AAA 134 834 11 HOH HOH . 
F 4 HOH AAA 135 835 478 HOH HOH . 
F 4 HOH AAA 136 836 452 HOH HOH . 
F 4 HOH AAA 137 837 416 HOH HOH . 
F 4 HOH AAA 138 838 424 HOH HOH . 
F 4 HOH AAA 139 839 328 HOH HOH . 
F 4 HOH AAA 140 840 356 HOH HOH . 
F 4 HOH AAA 141 841 450 HOH HOH . 
F 4 HOH AAA 142 842 469 HOH HOH . 
F 4 HOH AAA 143 843 371 HOH HOH . 
F 4 HOH AAA 144 844 390 HOH HOH . 
F 4 HOH AAA 145 845 330 HOH HOH . 
F 4 HOH AAA 146 846 487 HOH HOH . 
F 4 HOH AAA 147 847 451 HOH HOH . 
F 4 HOH AAA 148 848 465 HOH HOH . 
F 4 HOH AAA 149 849 492 HOH HOH . 
F 4 HOH AAA 150 850 382 HOH HOH . 
F 4 HOH AAA 151 851 351 HOH HOH . 
F 4 HOH AAA 152 852 354 HOH HOH . 
F 4 HOH AAA 153 853 418 HOH HOH . 
F 4 HOH AAA 154 854 16 HOH HOH . 
F 4 HOH AAA 155 855 393 HOH HOH . 
F 4 HOH AAA 156 856 376 HOH HOH . 
F 4 HOH AAA 157 857 387 HOH HOH . 
F 4 HOH AAA 158 858 408 HOH HOH . 
F 4 HOH AAA 159 859 12 HOH HOH . 
F 4 HOH AAA 160 860 9 HOH HOH . 
F 4 HOH AAA 161 861 15 HOH HOH . 
F 4 HOH AAA 162 862 489 HOH HOH . 
F 4 HOH AAA 163 863 352 HOH HOH . 
F 4 HOH AAA 164 864 3 HOH HOH . 
F 4 HOH AAA 165 865 395 HOH HOH . 
F 4 HOH AAA 166 866 441 HOH HOH . 
F 4 HOH AAA 167 867 400 HOH HOH . 
F 4 HOH AAA 168 868 1 HOH HOH . 
F 4 HOH AAA 169 869 419 HOH HOH . 
F 4 HOH AAA 170 870 442 HOH HOH . 
F 4 HOH AAA 171 871 466 HOH HOH . 
F 4 HOH AAA 172 872 447 HOH HOH . 
F 4 HOH AAA 173 873 410 HOH HOH . 
F 4 HOH AAA 174 874 401 HOH HOH . 
F 4 HOH AAA 175 875 370 HOH HOH . 
F 4 HOH AAA 176 876 460 HOH HOH . 
F 4 HOH AAA 177 877 484 HOH HOH . 
F 4 HOH AAA 178 878 8 HOH HOH . 
F 4 HOH AAA 179 879 386 HOH HOH . 
F 4 HOH AAA 180 880 486 HOH HOH . 
F 4 HOH AAA 181 881 438 HOH HOH . 
F 4 HOH AAA 182 882 14 HOH HOH . 
F 4 HOH AAA 183 883 463 HOH HOH . 
F 4 HOH AAA 184 884 459 HOH HOH . 
F 4 HOH AAA 185 885 448 HOH HOH . 
F 4 HOH AAA 186 886 458 HOH HOH . 
F 4 HOH AAA 187 887 409 HOH HOH . 
F 4 HOH AAA 188 888 7 HOH HOH . 
F 4 HOH AAA 189 889 417 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 QGQ . . . E 3 30.036 15.459 -2.654 1 13.18 ? N1 QGQ 604 AAA 1 
HETATM 2 C C4 QGQ . . . E 3 30.239 15.276 0.248 1 12.38 ? C4 QGQ 604 AAA 1 
HETATM 3 C C5 QGQ . . . E 3 31.323 16.31 0.107 1 11.6 ? C5 QGQ 604 AAA 1 
HETATM 4 C C6 QGQ . . . E 3 31.409 17.597 0.705 1 11.42 ? C6 QGQ 604 AAA 1 
HETATM 5 C C7 QGQ . . . E 3 30.418 18.278 1.591 1 11.79 ? C7 QGQ 604 AAA 1 
HETATM 6 C C8 QGQ . . . E 3 32.478 16.187 -0.591 1 11.75 ? C8 QGQ 604 AAA 1 
HETATM 7 C C10 QGQ . . . E 3 30.148 15.649 -3.971 1 14.13 ? C10 QGQ 604 AAA 1 
HETATM 8 C C9 QGQ . . . E 3 33.018 15.132 -1.481 1 12.54 ? C9 QGQ 604 AAA 1 
HETATM 9 O O QGQ . . . E 3 33.257 17.307 -0.428 1 11.57 ? O QGQ 604 AAA 1 
HETATM 10 N N QGQ . . . E 3 32.541 18.221 0.381 1 11.33 ? N QGQ 604 AAA 1 
HETATM 11 S S QGQ . . . E 3 28.599 15.71 -0.406 1 11.84 ? S QGQ 604 AAA 1 
HETATM 12 C C3 QGQ . . . E 3 28.869 15.835 -2.146 1 12.33 ? C3 QGQ 604 AAA 1 
HETATM 13 C C2 QGQ . . . E 3 27.802 16.325 -2.929 1 12.59 ? C2 QGQ 604 AAA 1 
HETATM 14 N N2 QGQ . . . E 3 29.256 16.179 -4.817 1 13.11 ? N2 QGQ 604 AAA 1 
HETATM 15 C C1 QGQ . . . E 3 28.065 16.521 -4.277 1 12.57 ? C1 QGQ 604 AAA 1 
HETATM 16 C C QGQ . . . E 3 27.071 17.19 -5.184 1 14.02 ? C QGQ 604 AAA 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           16 
#