data_6ZEX # _model_server_result.job_id MjYCUJ92k4OlplQqwFdDFA _model_server_result.datetime_utc '2025-01-11 02:57:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zex # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":705}' # _entry.id 6ZEX # _exptl.entry_id 6ZEX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZEX _cell.length_a 104.094 _cell.length_b 104.094 _cell.length_c 54.835 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZEX _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall 'P 61' _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 6ZEX _atom_sites.fract_transf_matrix[1][1] 0.009607 _atom_sites.fract_transf_matrix[1][2] 0.005546 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011093 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018237 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 701 1 DMS DMS . C 2 DMS A 1 702 3 DMS DMS . D 2 DMS A 1 703 4 DMS DMS . E 2 DMS A 1 704 5 DMS DMS . F 2 DMS A 1 705 6 DMS DMS . G 2 DMS A 1 706 7 DMS DMS . H 3 QHN A 1 707 1 QHN UNL . I 4 HOH A 1 801 45 HOH HOH . I 4 HOH A 2 802 31 HOH HOH . I 4 HOH A 3 803 9 HOH HOH . I 4 HOH A 4 804 42 HOH HOH . I 4 HOH A 5 805 36 HOH HOH . I 4 HOH A 6 806 12 HOH HOH . I 4 HOH A 7 807 2 HOH HOH . I 4 HOH A 8 808 5 HOH HOH . I 4 HOH A 9 809 61 HOH HOH . I 4 HOH A 10 810 25 HOH HOH . I 4 HOH A 11 811 11 HOH HOH . I 4 HOH A 12 812 37 HOH HOH . I 4 HOH A 13 813 39 HOH HOH . I 4 HOH A 14 814 46 HOH HOH . I 4 HOH A 15 815 51 HOH HOH . I 4 HOH A 16 816 17 HOH HOH . I 4 HOH A 17 817 41 HOH HOH . I 4 HOH A 18 818 60 HOH HOH . I 4 HOH A 19 819 53 HOH HOH . I 4 HOH A 20 820 48 HOH HOH . I 4 HOH A 21 821 10 HOH HOH . I 4 HOH A 22 822 6 HOH HOH . I 4 HOH A 23 823 34 HOH HOH . I 4 HOH A 24 824 32 HOH HOH . I 4 HOH A 25 825 29 HOH HOH . I 4 HOH A 26 826 58 HOH HOH . I 4 HOH A 27 827 26 HOH HOH . I 4 HOH A 28 828 55 HOH HOH . I 4 HOH A 29 829 28 HOH HOH . I 4 HOH A 30 830 43 HOH HOH . I 4 HOH A 31 831 44 HOH HOH . I 4 HOH A 32 832 56 HOH HOH . I 4 HOH A 33 833 50 HOH HOH . I 4 HOH A 34 834 38 HOH HOH . I 4 HOH A 35 835 33 HOH HOH . I 4 HOH A 36 836 54 HOH HOH . I 4 HOH A 37 837 57 HOH HOH . I 4 HOH A 38 838 8 HOH HOH . I 4 HOH A 39 839 24 HOH HOH . I 4 HOH A 40 840 59 HOH HOH . I 4 HOH A 41 841 27 HOH HOH . I 4 HOH A 42 842 3 HOH HOH . I 4 HOH A 43 843 7 HOH HOH . I 4 HOH A 44 844 47 HOH HOH . I 4 HOH A 45 845 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . F 2 -17.174 -2.347 2.532 1 71.48 ? S DMS 705 A 1 HETATM 2 O O DMS . . . F 2 -15.68 -2.241 2.382 1 77.89 ? O DMS 705 A 1 HETATM 3 C C1 DMS . . . F 2 -17.692 -1.435 4.015 1 67.62 ? C1 DMS 705 A 1 HETATM 4 C C2 DMS . . . F 2 -17.91 -1.45 1.143 1 68.6 ? C2 DMS 705 A 1 HETATM 5 H H11 DMS . . . F 2 -17.46 -2.003 4.878 1 81.51 ? H11 DMS 705 A 1 HETATM 6 H H12 DMS . . . F 2 -18.737 -1.264 3.978 1 81.51 ? H12 DMS 705 A 1 HETATM 7 H H13 DMS . . . F 2 -17.184 -0.508 4.056 1 81.51 ? H13 DMS 705 A 1 HETATM 8 H H21 DMS . . . F 2 -17.798 -2.017 0.257 1 82.69 ? H21 DMS 705 A 1 HETATM 9 H H22 DMS . . . F 2 -17.424 -0.516 1.028 1 82.69 ? H22 DMS 705 A 1 HETATM 10 H H23 DMS . . . F 2 -18.94 -1.29 1.332 1 82.69 ? H23 DMS 705 A 1 # _model_server_stats.io_time_ms 112 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #