data_6ZEY # _model_server_result.job_id pBr0YIMX1rin9pLCTdWJ7w _model_server_result.datetime_utc '2024-11-22 10:45:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zey # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":705}' # _entry.id 6ZEY # _exptl.entry_id 6ZEY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZEY _cell.length_a 104.03 _cell.length_b 104.03 _cell.length_c 55.992 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZEY _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall 'P 61' _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 6ZEY _atom_sites.fract_transf_matrix[1][1] 0.009613 _atom_sites.fract_transf_matrix[1][2] 0.00555 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0111 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01786 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 701 2 DMS DMS . C 2 DMS A 1 702 3 DMS DMS . D 2 DMS A 1 703 4 DMS DMS . E 2 DMS A 1 704 5 DMS DMS . F 2 DMS A 1 705 6 DMS DMS . G 3 QGZ A 1 706 1 QGZ UNL . H 4 HOH A 1 801 55 HOH HOH . H 4 HOH A 2 802 80 HOH HOH . H 4 HOH A 3 803 83 HOH HOH . H 4 HOH A 4 804 136 HOH HOH . H 4 HOH A 5 805 108 HOH HOH . H 4 HOH A 6 806 68 HOH HOH . H 4 HOH A 7 807 41 HOH HOH . H 4 HOH A 8 808 78 HOH HOH . H 4 HOH A 9 809 48 HOH HOH . H 4 HOH A 10 810 118 HOH HOH . H 4 HOH A 11 811 120 HOH HOH . H 4 HOH A 12 812 16 HOH HOH . H 4 HOH A 13 813 105 HOH HOH . H 4 HOH A 14 814 74 HOH HOH . H 4 HOH A 15 815 127 HOH HOH . H 4 HOH A 16 816 103 HOH HOH . H 4 HOH A 17 817 73 HOH HOH . H 4 HOH A 18 818 69 HOH HOH . H 4 HOH A 19 819 115 HOH HOH . H 4 HOH A 20 820 140 HOH HOH . H 4 HOH A 21 821 38 HOH HOH . H 4 HOH A 22 822 95 HOH HOH . H 4 HOH A 23 823 144 HOH HOH . H 4 HOH A 24 824 131 HOH HOH . H 4 HOH A 25 825 82 HOH HOH . H 4 HOH A 26 826 42 HOH HOH . H 4 HOH A 27 827 107 HOH HOH . H 4 HOH A 28 828 6 HOH HOH . H 4 HOH A 29 829 45 HOH HOH . H 4 HOH A 30 830 119 HOH HOH . H 4 HOH A 31 831 75 HOH HOH . H 4 HOH A 32 832 54 HOH HOH . H 4 HOH A 33 833 25 HOH HOH . H 4 HOH A 34 834 128 HOH HOH . H 4 HOH A 35 835 5 HOH HOH . H 4 HOH A 36 836 10 HOH HOH . H 4 HOH A 37 837 91 HOH HOH . H 4 HOH A 38 838 110 HOH HOH . H 4 HOH A 39 839 18 HOH HOH . H 4 HOH A 40 840 11 HOH HOH . H 4 HOH A 41 841 35 HOH HOH . H 4 HOH A 42 842 132 HOH HOH . H 4 HOH A 43 843 142 HOH HOH . H 4 HOH A 44 844 49 HOH HOH . H 4 HOH A 45 845 7 HOH HOH . H 4 HOH A 46 846 53 HOH HOH . H 4 HOH A 47 847 99 HOH HOH . H 4 HOH A 48 848 124 HOH HOH . H 4 HOH A 49 849 129 HOH HOH . H 4 HOH A 50 850 24 HOH HOH . H 4 HOH A 51 851 94 HOH HOH . H 4 HOH A 52 852 14 HOH HOH . H 4 HOH A 53 853 36 HOH HOH . H 4 HOH A 54 854 27 HOH HOH . H 4 HOH A 55 855 111 HOH HOH . H 4 HOH A 56 856 17 HOH HOH . H 4 HOH A 57 857 125 HOH HOH . H 4 HOH A 58 858 12 HOH HOH . H 4 HOH A 59 859 88 HOH HOH . H 4 HOH A 60 860 20 HOH HOH . H 4 HOH A 61 861 81 HOH HOH . H 4 HOH A 62 862 79 HOH HOH . H 4 HOH A 63 863 1 HOH HOH . H 4 HOH A 64 864 15 HOH HOH . H 4 HOH A 65 865 58 HOH HOH . H 4 HOH A 66 866 22 HOH HOH . H 4 HOH A 67 867 109 HOH HOH . H 4 HOH A 68 868 139 HOH HOH . H 4 HOH A 69 869 26 HOH HOH . H 4 HOH A 70 870 9 HOH HOH . H 4 HOH A 71 871 101 HOH HOH . H 4 HOH A 72 872 8 HOH HOH . H 4 HOH A 73 873 63 HOH HOH . H 4 HOH A 74 874 47 HOH HOH . H 4 HOH A 75 875 50 HOH HOH . H 4 HOH A 76 876 77 HOH HOH . H 4 HOH A 77 877 52 HOH HOH . H 4 HOH A 78 878 84 HOH HOH . H 4 HOH A 79 879 29 HOH HOH . H 4 HOH A 80 880 32 HOH HOH . H 4 HOH A 81 881 70 HOH HOH . H 4 HOH A 82 882 96 HOH HOH . H 4 HOH A 83 883 150 HOH HOH . H 4 HOH A 84 884 114 HOH HOH . H 4 HOH A 85 885 135 HOH HOH . H 4 HOH A 86 886 76 HOH HOH . H 4 HOH A 87 887 61 HOH HOH . H 4 HOH A 88 888 66 HOH HOH . H 4 HOH A 89 889 133 HOH HOH . H 4 HOH A 90 890 98 HOH HOH . H 4 HOH A 91 891 104 HOH HOH . H 4 HOH A 92 892 33 HOH HOH . H 4 HOH A 93 893 43 HOH HOH . H 4 HOH A 94 894 130 HOH HOH . H 4 HOH A 95 895 116 HOH HOH . H 4 HOH A 96 896 39 HOH HOH . H 4 HOH A 97 897 19 HOH HOH . H 4 HOH A 98 898 21 HOH HOH . H 4 HOH A 99 899 112 HOH HOH . H 4 HOH A 100 900 3 HOH HOH . H 4 HOH A 101 901 23 HOH HOH . H 4 HOH A 102 902 146 HOH HOH . H 4 HOH A 103 903 4 HOH HOH . H 4 HOH A 104 904 60 HOH HOH . H 4 HOH A 105 905 51 HOH HOH . H 4 HOH A 106 906 28 HOH HOH . H 4 HOH A 107 907 106 HOH HOH . H 4 HOH A 108 908 56 HOH HOH . H 4 HOH A 109 909 147 HOH HOH . H 4 HOH A 110 910 123 HOH HOH . H 4 HOH A 111 911 46 HOH HOH . H 4 HOH A 112 912 71 HOH HOH . H 4 HOH A 113 913 151 HOH HOH . H 4 HOH A 114 914 62 HOH HOH . H 4 HOH A 115 915 143 HOH HOH . H 4 HOH A 116 916 122 HOH HOH . H 4 HOH A 117 917 57 HOH HOH . H 4 HOH A 118 918 126 HOH HOH . H 4 HOH A 119 919 86 HOH HOH . H 4 HOH A 120 920 134 HOH HOH . H 4 HOH A 121 921 44 HOH HOH . H 4 HOH A 122 922 149 HOH HOH . H 4 HOH A 123 923 85 HOH HOH . H 4 HOH A 124 924 30 HOH HOH . H 4 HOH A 125 925 67 HOH HOH . H 4 HOH A 126 926 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . F 2 4.471 -48.072 -10.521 1 51.38 ? S DMS 705 A 1 HETATM 2 O O DMS . . . F 2 5.782 -48.712 -10.182 1 62.49 ? O DMS 705 A 1 HETATM 3 C C1 DMS . . . F 2 4.6 -47.328 -12.174 1 44.6 ? C1 DMS 705 A 1 HETATM 4 C C2 DMS . . . F 2 3.259 -49.376 -10.875 1 46.65 ? C2 DMS 705 A 1 HETATM 5 H H11 DMS . . . F 2 5.534 -46.836 -12.268 1 53.58 ? H11 DMS 705 A 1 HETATM 6 H H12 DMS . . . F 2 3.818 -46.627 -12.308 1 53.58 ? H12 DMS 705 A 1 HETATM 7 H H13 DMS . . . F 2 4.525 -48.086 -12.91 1 53.58 ? H13 DMS 705 A 1 HETATM 8 H H21 DMS . . . F 2 2.473 -49.329 -10.166 1 56.04 ? H21 DMS 705 A 1 HETATM 9 H H22 DMS . . . F 2 3.73 -50.322 -10.816 1 56.04 ? H22 DMS 705 A 1 HETATM 10 H H23 DMS . . . F 2 2.865 -49.238 -11.848 1 56.04 ? H23 DMS 705 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #