data_6ZF2 # _model_server_result.job_id YbZEnyLH3GsOAb4ljqHJjw _model_server_result.datetime_utc '2024-11-25 16:11:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zf2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":704}' # _entry.id 6ZF2 # _exptl.entry_id 6ZF2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZF2 _cell.length_a 104.044 _cell.length_b 104.044 _cell.length_c 53.77 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZF2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall 'P 61' _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 6ZF2 _atom_sites.fract_transf_matrix[1][1] 0.009611 _atom_sites.fract_transf_matrix[1][2] 0.005549 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011098 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018598 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 701 1 DMS DMS . C 2 DMS A 1 702 2 DMS DMS . D 2 DMS A 1 703 4 DMS DMS . E 2 DMS A 1 704 6 DMS DMS . F 3 SO4 A 1 705 1 SO4 SO4 . G 4 QJ5 A 1 706 1 QJ5 UNL . H 5 HOH A 1 801 5 HOH HOH . H 5 HOH A 2 802 11 HOH HOH . H 5 HOH A 3 803 8 HOH HOH . H 5 HOH A 4 804 9 HOH HOH . H 5 HOH A 5 805 2 HOH HOH . H 5 HOH A 6 806 1 HOH HOH . H 5 HOH A 7 807 12 HOH HOH . H 5 HOH A 8 808 6 HOH HOH . H 5 HOH A 9 809 4 HOH HOH . H 5 HOH A 10 810 10 HOH HOH . H 5 HOH A 11 811 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . E 2 -3.828 47.359 -10.836 1 66.64 ? S DMS 704 A 1 HETATM 2 O O DMS . . . E 2 -2.769 48.315 -11.292 1 59.07 ? O DMS 704 A 1 HETATM 3 C C1 DMS . . . E 2 -5.411 48.231 -10.767 1 37.69 ? C1 DMS 704 A 1 HETATM 4 C C2 DMS . . . E 2 -4.265 46.215 -12.174 1 43.29 ? C2 DMS 704 A 1 HETATM 5 H H11 DMS . . . E 2 -5.278 49.17 -10.296 1 45.13 ? H11 DMS 704 A 1 HETATM 6 H H12 DMS . . . E 2 -6.108 47.655 -10.215 1 45.13 ? H12 DMS 704 A 1 HETATM 7 H H13 DMS . . . E 2 -5.777 48.378 -11.75 1 45.13 ? H13 DMS 704 A 1 HETATM 8 H H21 DMS . . . E 2 -3.55 45.435 -12.22 1 51.85 ? H21 DMS 704 A 1 HETATM 9 H H22 DMS . . . E 2 -4.277 46.737 -13.096 1 51.85 ? H22 DMS 704 A 1 HETATM 10 H H23 DMS . . . E 2 -5.223 45.804 -11.989 1 51.85 ? H23 DMS 704 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #