data_6ZF3 # _model_server_result.job_id Ycxtd8awA0TaCYdnpK4exQ _model_server_result.datetime_utc '2025-01-10 22:50:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zf3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1110}' # _entry.id 6ZF3 # _exptl.entry_id 6ZF3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZF3 _cell.length_a 103.153 _cell.length_b 103.153 _cell.length_c 55.287 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZF3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall 'P 61' _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 6ZF3 _atom_sites.fract_transf_matrix[1][1] 0.009694 _atom_sites.fract_transf_matrix[1][2] 0.005597 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011194 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018087 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 QH5 A 1 1101 1101 QH5 QH5 . C 3 SO4 A 1 1102 701 SO4 SO4 . D 3 SO4 A 1 1103 702 SO4 SO4 . E 3 SO4 A 1 1104 703 SO4 SO4 . F 4 DMS A 1 1105 704 DMS DMS . G 4 DMS A 1 1106 705 DMS DMS . H 4 DMS A 1 1107 706 DMS DMS . I 4 DMS A 1 1108 707 DMS DMS . J 4 DMS A 1 1109 708 DMS DMS . K 4 DMS A 1 1110 709 DMS DMS . L 4 DMS A 1 1111 710 DMS DMS . M 4 DMS A 1 1112 711 DMS DMS . N 4 DMS A 1 1113 712 DMS DMS . O 4 DMS A 1 1114 713 DMS DMS . P 4 DMS A 1 1115 714 DMS DMS . Q 4 DMS A 1 1116 715 DMS DMS . R 5 HOH A 1 1201 801 HOH HOH . R 5 HOH A 2 1202 802 HOH HOH . R 5 HOH A 3 1203 803 HOH HOH . R 5 HOH A 4 1204 805 HOH HOH . R 5 HOH A 5 1205 807 HOH HOH . R 5 HOH A 6 1206 804 HOH HOH . R 5 HOH A 7 1207 810 HOH HOH . R 5 HOH A 8 1208 806 HOH HOH . R 5 HOH A 9 1209 808 HOH HOH . R 5 HOH A 10 1210 809 HOH HOH . R 5 HOH A 11 1211 811 HOH HOH . R 5 HOH A 12 1212 815 HOH HOH . R 5 HOH A 13 1213 816 HOH HOH . R 5 HOH A 14 1214 812 HOH HOH . R 5 HOH A 15 1215 818 HOH HOH . R 5 HOH A 16 1216 822 HOH HOH . R 5 HOH A 17 1217 819 HOH HOH . R 5 HOH A 18 1218 817 HOH HOH . R 5 HOH A 19 1219 813 HOH HOH . R 5 HOH A 20 1220 814 HOH HOH . R 5 HOH A 21 1221 824 HOH HOH . R 5 HOH A 22 1222 826 HOH HOH . R 5 HOH A 23 1223 835 HOH HOH . R 5 HOH A 24 1224 820 HOH HOH . R 5 HOH A 25 1225 839 HOH HOH . R 5 HOH A 26 1226 823 HOH HOH . R 5 HOH A 27 1227 829 HOH HOH . R 5 HOH A 28 1228 828 HOH HOH . R 5 HOH A 29 1229 831 HOH HOH . R 5 HOH A 30 1230 825 HOH HOH . R 5 HOH A 31 1231 827 HOH HOH . R 5 HOH A 32 1232 838 HOH HOH . R 5 HOH A 33 1233 830 HOH HOH . R 5 HOH A 34 1234 834 HOH HOH . R 5 HOH A 35 1235 832 HOH HOH . R 5 HOH A 36 1236 833 HOH HOH . R 5 HOH A 37 1237 848 HOH HOH . R 5 HOH A 38 1238 836 HOH HOH . R 5 HOH A 39 1239 842 HOH HOH . R 5 HOH A 40 1240 841 HOH HOH . R 5 HOH A 41 1241 840 HOH HOH . R 5 HOH A 42 1242 845 HOH HOH . R 5 HOH A 43 1243 851 HOH HOH . R 5 HOH A 44 1244 870 HOH HOH . R 5 HOH A 45 1245 844 HOH HOH . R 5 HOH A 46 1246 855 HOH HOH . R 5 HOH A 47 1247 850 HOH HOH . R 5 HOH A 48 1248 821 HOH HOH . R 5 HOH A 49 1249 858 HOH HOH . R 5 HOH A 50 1250 853 HOH HOH . R 5 HOH A 51 1251 846 HOH HOH . R 5 HOH A 52 1252 863 HOH HOH . R 5 HOH A 53 1253 866 HOH HOH . R 5 HOH A 54 1254 859 HOH HOH . R 5 HOH A 55 1255 861 HOH HOH . R 5 HOH A 56 1256 849 HOH HOH . R 5 HOH A 57 1257 860 HOH HOH . R 5 HOH A 58 1258 862 HOH HOH . R 5 HOH A 59 1259 856 HOH HOH . R 5 HOH A 60 1260 857 HOH HOH . R 5 HOH A 61 1261 843 HOH HOH . R 5 HOH A 62 1262 868 HOH HOH . R 5 HOH A 63 1263 854 HOH HOH . R 5 HOH A 64 1264 865 HOH HOH . R 5 HOH A 65 1265 867 HOH HOH . R 5 HOH A 66 1266 847 HOH HOH . R 5 HOH A 67 1267 852 HOH HOH . R 5 HOH A 68 1268 876 HOH HOH . R 5 HOH A 69 1269 873 HOH HOH . R 5 HOH A 70 1270 874 HOH HOH . R 5 HOH A 71 1271 871 HOH HOH . R 5 HOH A 72 1272 880 HOH HOH . R 5 HOH A 73 1273 878 HOH HOH . R 5 HOH A 74 1274 869 HOH HOH . R 5 HOH A 75 1275 875 HOH HOH . R 5 HOH A 76 1276 872 HOH HOH . R 5 HOH A 77 1277 864 HOH HOH . R 5 HOH A 78 1278 882 HOH HOH . R 5 HOH A 79 1279 881 HOH HOH . R 5 HOH A 80 1280 879 HOH HOH . R 5 HOH A 81 1281 883 HOH HOH . R 5 HOH A 82 1282 888 HOH HOH . R 5 HOH A 83 1283 885 HOH HOH . R 5 HOH A 84 1284 889 HOH HOH . R 5 HOH A 85 1285 886 HOH HOH . R 5 HOH A 86 1286 892 HOH HOH . R 5 HOH A 87 1287 891 HOH HOH . R 5 HOH A 88 1288 877 HOH HOH . R 5 HOH A 89 1289 890 HOH HOH . R 5 HOH A 90 1290 893 HOH HOH . R 5 HOH A 91 1291 884 HOH HOH . R 5 HOH A 92 1292 907 HOH HOH . R 5 HOH A 93 1293 901 HOH HOH . R 5 HOH A 94 1294 887 HOH HOH . R 5 HOH A 95 1295 898 HOH HOH . R 5 HOH A 96 1296 895 HOH HOH . R 5 HOH A 97 1297 894 HOH HOH . R 5 HOH A 98 1298 903 HOH HOH . R 5 HOH A 99 1299 906 HOH HOH . R 5 HOH A 100 1300 899 HOH HOH . R 5 HOH A 101 1301 902 HOH HOH . R 5 HOH A 102 1302 918 HOH HOH . R 5 HOH A 103 1303 900 HOH HOH . R 5 HOH A 104 1304 908 HOH HOH . R 5 HOH A 105 1305 916 HOH HOH . R 5 HOH A 106 1306 912 HOH HOH . R 5 HOH A 107 1307 905 HOH HOH . R 5 HOH A 108 1308 913 HOH HOH . R 5 HOH A 109 1309 917 HOH HOH . R 5 HOH A 110 1310 911 HOH HOH . R 5 HOH A 111 1311 897 HOH HOH . R 5 HOH A 112 1312 914 HOH HOH . R 5 HOH A 113 1313 909 HOH HOH . R 5 HOH A 114 1314 925 HOH HOH . R 5 HOH A 115 1315 896 HOH HOH . R 5 HOH A 116 1316 922 HOH HOH . R 5 HOH A 117 1317 923 HOH HOH . R 5 HOH A 118 1318 924 HOH HOH . R 5 HOH A 119 1319 915 HOH HOH . R 5 HOH A 120 1320 910 HOH HOH . R 5 HOH A 121 1321 921 HOH HOH . R 5 HOH A 122 1322 926 HOH HOH . R 5 HOH A 123 1323 934 HOH HOH . R 5 HOH A 124 1324 932 HOH HOH . R 5 HOH A 125 1325 927 HOH HOH . R 5 HOH A 126 1326 919 HOH HOH . R 5 HOH A 127 1327 933 HOH HOH . R 5 HOH A 128 1328 928 HOH HOH . R 5 HOH A 129 1329 936 HOH HOH . R 5 HOH A 130 1330 904 HOH HOH . R 5 HOH A 131 1331 931 HOH HOH . R 5 HOH A 132 1332 937 HOH HOH . R 5 HOH A 133 1333 920 HOH HOH . R 5 HOH A 134 1334 939 HOH HOH . R 5 HOH A 135 1335 935 HOH HOH . R 5 HOH A 136 1336 938 HOH HOH . R 5 HOH A 137 1337 942 HOH HOH . R 5 HOH A 138 1338 945 HOH HOH . R 5 HOH A 139 1339 943 HOH HOH . R 5 HOH A 140 1340 956 HOH HOH . R 5 HOH A 141 1341 944 HOH HOH . R 5 HOH A 142 1342 946 HOH HOH . R 5 HOH A 143 1343 940 HOH HOH . R 5 HOH A 144 1344 941 HOH HOH . R 5 HOH A 145 1345 950 HOH HOH . R 5 HOH A 146 1346 949 HOH HOH . R 5 HOH A 147 1347 955 HOH HOH . R 5 HOH A 148 1348 951 HOH HOH . R 5 HOH A 149 1349 948 HOH HOH . R 5 HOH A 150 1350 953 HOH HOH . R 5 HOH A 151 1351 952 HOH HOH . R 5 HOH A 152 1352 929 HOH HOH . R 5 HOH A 153 1353 947 HOH HOH . R 5 HOH A 154 1354 954 HOH HOH . R 5 HOH A 155 1355 930 HOH HOH . R 5 HOH A 156 1356 957 HOH HOH . R 5 HOH A 157 1357 962 HOH HOH . R 5 HOH A 158 1358 959 HOH HOH . R 5 HOH A 159 1359 966 HOH HOH . R 5 HOH A 160 1360 964 HOH HOH . R 5 HOH A 161 1361 958 HOH HOH . R 5 HOH A 162 1362 960 HOH HOH . R 5 HOH A 163 1363 961 HOH HOH . R 5 HOH A 164 1364 968 HOH HOH . R 5 HOH A 165 1365 963 HOH HOH . R 5 HOH A 166 1366 972 HOH HOH . R 5 HOH A 167 1367 967 HOH HOH . R 5 HOH A 168 1368 969 HOH HOH . R 5 HOH A 169 1369 970 HOH HOH . R 5 HOH A 170 1370 977 HOH HOH . R 5 HOH A 171 1371 965 HOH HOH . R 5 HOH A 172 1372 971 HOH HOH . R 5 HOH A 173 1373 974 HOH HOH . R 5 HOH A 174 1374 980 HOH HOH . R 5 HOH A 175 1375 973 HOH HOH . R 5 HOH A 176 1376 837 HOH HOH . R 5 HOH A 177 1377 975 HOH HOH . R 5 HOH A 178 1378 981 HOH HOH . R 5 HOH A 179 1379 976 HOH HOH . R 5 HOH A 180 1380 982 HOH HOH . R 5 HOH A 181 1381 978 HOH HOH . R 5 HOH A 182 1382 979 HOH HOH . R 5 HOH A 183 1383 984 HOH HOH . R 5 HOH A 184 1384 985 HOH HOH . R 5 HOH A 185 1385 983 HOH HOH . R 5 HOH A 186 1386 986 HOH HOH . R 5 HOH A 187 1387 989 HOH HOH . R 5 HOH A 188 1388 987 HOH HOH . R 5 HOH A 189 1389 991 HOH HOH . R 5 HOH A 190 1390 988 HOH HOH . R 5 HOH A 191 1391 990 HOH HOH . R 5 HOH A 192 1392 992 HOH HOH . R 5 HOH A 193 1393 993 HOH HOH . R 5 HOH A 194 1394 996 HOH HOH . R 5 HOH A 195 1395 995 HOH HOH . R 5 HOH A 196 1396 994 HOH HOH . R 5 HOH A 197 1397 998 HOH HOH . R 5 HOH A 198 1398 997 HOH HOH . R 5 HOH A 199 1399 1000 HOH HOH . R 5 HOH A 200 1400 999 HOH HOH . R 5 HOH A 201 1401 1001 HOH HOH . R 5 HOH A 202 1402 1004 HOH HOH . R 5 HOH A 203 1403 1002 HOH HOH . R 5 HOH A 204 1404 1003 HOH HOH . R 5 HOH A 205 1405 1005 HOH HOH . R 5 HOH A 206 1406 1006 HOH HOH . R 5 HOH A 207 1407 1008 HOH HOH . R 5 HOH A 208 1408 1007 HOH HOH . R 5 HOH A 209 1409 1009 HOH HOH . R 5 HOH A 210 1410 1010 HOH HOH . R 5 HOH A 211 1411 1011 HOH HOH . R 5 HOH A 212 1412 1012 HOH HOH . R 5 HOH A 213 1413 1016 HOH HOH . R 5 HOH A 214 1414 1013 HOH HOH . R 5 HOH A 215 1415 1015 HOH HOH . R 5 HOH A 216 1416 1014 HOH HOH . R 5 HOH A 217 1417 1017 HOH HOH . R 5 HOH A 218 1418 1018 HOH HOH . R 5 HOH A 219 1419 1019 HOH HOH . R 5 HOH A 220 1420 1020 HOH HOH . R 5 HOH A 221 1421 1021 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . K 4 -19.539 1.092 -9.674 1 65.85 ? S DMS 1110 A 1 HETATM 2 O O DMS . . . K 4 -20.697 1.457 -10.549 1 66.07 ? O DMS 1110 A 1 HETATM 3 C C1 DMS . . . K 4 -18.204 0.408 -10.696 1 65.88 ? C1 DMS 1110 A 1 HETATM 4 C C2 DMS . . . K 4 -18.72 2.606 -9.099 1 64.95 ? C2 DMS 1110 A 1 HETATM 5 H H11 DMS . . . K 4 -18.517 -0.512 -11.117 1 79.03 ? H11 DMS 1110 A 1 HETATM 6 H H12 DMS . . . K 4 -17.347 0.247 -10.097 1 79.03 ? H12 DMS 1110 A 1 HETATM 7 H H13 DMS . . . K 4 -17.969 1.089 -11.473 1 79.03 ? H13 DMS 1110 A 1 HETATM 8 H H21 DMS . . . K 4 -19.377 3.145 -8.467 1 77.91 ? H21 DMS 1110 A 1 HETATM 9 H H22 DMS . . . K 4 -18.461 3.206 -9.932 1 77.91 ? H22 DMS 1110 A 1 HETATM 10 H H23 DMS . . . K 4 -17.844 2.352 -8.562 1 77.91 ? H23 DMS 1110 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 387 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #