data_6ZF8 # _model_server_result.job_id Vd4ux7eLNVMi1KigDR7xxg _model_server_result.datetime_utc '2024-11-25 15:10:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zf8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":712}' # _entry.id 6ZF8 # _exptl.entry_id 6ZF8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZF8 _cell.length_a 103.35 _cell.length_b 103.35 _cell.length_c 55.019 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZF8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall 'P 61' _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 6ZF8 _atom_sites.fract_transf_matrix[1][1] 0.009676 _atom_sites.fract_transf_matrix[1][2] 0.005586 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011173 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018176 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 701 701 SO4 SO4 . C 2 SO4 A 1 702 702 SO4 SO4 . D 3 DMS A 1 703 703 DMS DMS . E 3 DMS A 1 704 704 DMS DMS . F 3 DMS A 1 705 705 DMS DMS . G 3 DMS A 1 706 706 DMS DMS . H 3 DMS A 1 707 707 DMS DMS . I 3 DMS A 1 708 708 DMS DMS . J 3 DMS A 1 709 709 DMS DMS . K 3 DMS A 1 710 710 DMS DMS . L 3 DMS A 1 711 711 DMS DMS . M 3 DMS A 1 712 712 DMS DMS . N 3 DMS A 1 713 713 DMS DMS . O 3 DMS A 1 714 714 DMS DMS . P 3 DMS A 1 715 715 DMS DMS . Q 3 DMS A 1 716 716 DMS DMS . R 4 QHZ A 1 717 1001 QHZ QHZ . S 5 HOH A 1 801 801 HOH HOH . S 5 HOH A 2 802 802 HOH HOH . S 5 HOH A 3 803 803 HOH HOH . S 5 HOH A 4 804 804 HOH HOH . S 5 HOH A 5 805 811 HOH HOH . S 5 HOH A 6 806 808 HOH HOH . S 5 HOH A 7 807 813 HOH HOH . S 5 HOH A 8 808 810 HOH HOH . S 5 HOH A 9 809 817 HOH HOH . S 5 HOH A 10 810 806 HOH HOH . S 5 HOH A 11 811 807 HOH HOH . S 5 HOH A 12 812 822 HOH HOH . S 5 HOH A 13 813 812 HOH HOH . S 5 HOH A 14 814 809 HOH HOH . S 5 HOH A 15 815 816 HOH HOH . S 5 HOH A 16 816 828 HOH HOH . S 5 HOH A 17 817 821 HOH HOH . S 5 HOH A 18 818 827 HOH HOH . S 5 HOH A 19 819 815 HOH HOH . S 5 HOH A 20 820 814 HOH HOH . S 5 HOH A 21 821 823 HOH HOH . S 5 HOH A 22 822 820 HOH HOH . S 5 HOH A 23 823 819 HOH HOH . S 5 HOH A 24 824 830 HOH HOH . S 5 HOH A 25 825 818 HOH HOH . S 5 HOH A 26 826 824 HOH HOH . S 5 HOH A 27 827 825 HOH HOH . S 5 HOH A 28 828 835 HOH HOH . S 5 HOH A 29 829 826 HOH HOH . S 5 HOH A 30 830 837 HOH HOH . S 5 HOH A 31 831 836 HOH HOH . S 5 HOH A 32 832 841 HOH HOH . S 5 HOH A 33 833 858 HOH HOH . S 5 HOH A 34 834 834 HOH HOH . S 5 HOH A 35 835 831 HOH HOH . S 5 HOH A 36 836 849 HOH HOH . S 5 HOH A 37 837 805 HOH HOH . S 5 HOH A 38 838 829 HOH HOH . S 5 HOH A 39 839 845 HOH HOH . S 5 HOH A 40 840 850 HOH HOH . S 5 HOH A 41 841 842 HOH HOH . S 5 HOH A 42 842 863 HOH HOH . S 5 HOH A 43 843 848 HOH HOH . S 5 HOH A 44 844 843 HOH HOH . S 5 HOH A 45 845 833 HOH HOH . S 5 HOH A 46 846 839 HOH HOH . S 5 HOH A 47 847 851 HOH HOH . S 5 HOH A 48 848 871 HOH HOH . S 5 HOH A 49 849 838 HOH HOH . S 5 HOH A 50 850 844 HOH HOH . S 5 HOH A 51 851 840 HOH HOH . S 5 HOH A 52 852 847 HOH HOH . S 5 HOH A 53 853 846 HOH HOH . S 5 HOH A 54 854 877 HOH HOH . S 5 HOH A 55 855 856 HOH HOH . S 5 HOH A 56 856 854 HOH HOH . S 5 HOH A 57 857 859 HOH HOH . S 5 HOH A 58 858 832 HOH HOH . S 5 HOH A 59 859 870 HOH HOH . S 5 HOH A 60 860 861 HOH HOH . S 5 HOH A 61 861 853 HOH HOH . S 5 HOH A 62 862 865 HOH HOH . S 5 HOH A 63 863 852 HOH HOH . S 5 HOH A 64 864 873 HOH HOH . S 5 HOH A 65 865 855 HOH HOH . S 5 HOH A 66 866 868 HOH HOH . S 5 HOH A 67 867 864 HOH HOH . S 5 HOH A 68 868 866 HOH HOH . S 5 HOH A 69 869 860 HOH HOH . S 5 HOH A 70 870 884 HOH HOH . S 5 HOH A 71 871 885 HOH HOH . S 5 HOH A 72 872 875 HOH HOH . S 5 HOH A 73 873 857 HOH HOH . S 5 HOH A 74 874 882 HOH HOH . S 5 HOH A 75 875 869 HOH HOH . S 5 HOH A 76 876 878 HOH HOH . S 5 HOH A 77 877 862 HOH HOH . S 5 HOH A 78 878 874 HOH HOH . S 5 HOH A 79 879 867 HOH HOH . S 5 HOH A 80 880 883 HOH HOH . S 5 HOH A 81 881 876 HOH HOH . S 5 HOH A 82 882 891 HOH HOH . S 5 HOH A 83 883 880 HOH HOH . S 5 HOH A 84 884 886 HOH HOH . S 5 HOH A 85 885 879 HOH HOH . S 5 HOH A 86 886 872 HOH HOH . S 5 HOH A 87 887 896 HOH HOH . S 5 HOH A 88 888 909 HOH HOH . S 5 HOH A 89 889 881 HOH HOH . S 5 HOH A 90 890 906 HOH HOH . S 5 HOH A 91 891 889 HOH HOH . S 5 HOH A 92 892 887 HOH HOH . S 5 HOH A 93 893 899 HOH HOH . S 5 HOH A 94 894 893 HOH HOH . S 5 HOH A 95 895 898 HOH HOH . S 5 HOH A 96 896 890 HOH HOH . S 5 HOH A 97 897 908 HOH HOH . S 5 HOH A 98 898 892 HOH HOH . S 5 HOH A 99 899 907 HOH HOH . S 5 HOH A 100 900 894 HOH HOH . S 5 HOH A 101 901 895 HOH HOH . S 5 HOH A 102 902 897 HOH HOH . S 5 HOH A 103 903 933 HOH HOH . S 5 HOH A 104 904 901 HOH HOH . S 5 HOH A 105 905 888 HOH HOH . S 5 HOH A 106 906 903 HOH HOH . S 5 HOH A 107 907 902 HOH HOH . S 5 HOH A 108 908 900 HOH HOH . S 5 HOH A 109 909 910 HOH HOH . S 5 HOH A 110 910 917 HOH HOH . S 5 HOH A 111 911 911 HOH HOH . S 5 HOH A 112 912 913 HOH HOH . S 5 HOH A 113 913 912 HOH HOH . S 5 HOH A 114 914 904 HOH HOH . S 5 HOH A 115 915 930 HOH HOH . S 5 HOH A 116 916 919 HOH HOH . S 5 HOH A 117 917 944 HOH HOH . S 5 HOH A 118 918 927 HOH HOH . S 5 HOH A 119 919 918 HOH HOH . S 5 HOH A 120 920 915 HOH HOH . S 5 HOH A 121 921 921 HOH HOH . S 5 HOH A 122 922 905 HOH HOH . S 5 HOH A 123 923 929 HOH HOH . S 5 HOH A 124 924 920 HOH HOH . S 5 HOH A 125 925 942 HOH HOH . S 5 HOH A 126 926 925 HOH HOH . S 5 HOH A 127 927 938 HOH HOH . S 5 HOH A 128 928 943 HOH HOH . S 5 HOH A 129 929 934 HOH HOH . S 5 HOH A 130 930 914 HOH HOH . S 5 HOH A 131 931 936 HOH HOH . S 5 HOH A 132 932 931 HOH HOH . S 5 HOH A 133 933 932 HOH HOH . S 5 HOH A 134 934 940 HOH HOH . S 5 HOH A 135 935 937 HOH HOH . S 5 HOH A 136 936 924 HOH HOH . S 5 HOH A 137 937 941 HOH HOH . S 5 HOH A 138 938 948 HOH HOH . S 5 HOH A 139 939 935 HOH HOH . S 5 HOH A 140 940 926 HOH HOH . S 5 HOH A 141 941 945 HOH HOH . S 5 HOH A 142 942 949 HOH HOH . S 5 HOH A 143 943 922 HOH HOH . S 5 HOH A 144 944 916 HOH HOH . S 5 HOH A 145 945 928 HOH HOH . S 5 HOH A 146 946 923 HOH HOH . S 5 HOH A 147 947 939 HOH HOH . S 5 HOH A 148 948 950 HOH HOH . S 5 HOH A 149 949 946 HOH HOH . S 5 HOH A 150 950 954 HOH HOH . S 5 HOH A 151 951 957 HOH HOH . S 5 HOH A 152 952 953 HOH HOH . S 5 HOH A 153 953 951 HOH HOH . S 5 HOH A 154 954 955 HOH HOH . S 5 HOH A 155 955 952 HOH HOH . S 5 HOH A 156 956 947 HOH HOH . S 5 HOH A 157 957 963 HOH HOH . S 5 HOH A 158 958 961 HOH HOH . S 5 HOH A 159 959 956 HOH HOH . S 5 HOH A 160 960 958 HOH HOH . S 5 HOH A 161 961 960 HOH HOH . S 5 HOH A 162 962 959 HOH HOH . S 5 HOH A 163 963 962 HOH HOH . S 5 HOH A 164 964 964 HOH HOH . S 5 HOH A 165 965 965 HOH HOH . S 5 HOH A 166 966 966 HOH HOH . S 5 HOH A 167 967 968 HOH HOH . S 5 HOH A 168 968 967 HOH HOH . S 5 HOH A 169 969 970 HOH HOH . S 5 HOH A 170 970 969 HOH HOH . S 5 HOH A 171 971 971 HOH HOH . S 5 HOH A 172 972 972 HOH HOH . S 5 HOH A 173 973 973 HOH HOH . S 5 HOH A 174 974 975 HOH HOH . S 5 HOH A 175 975 974 HOH HOH . S 5 HOH A 176 976 976 HOH HOH . S 5 HOH A 177 977 978 HOH HOH . S 5 HOH A 178 978 977 HOH HOH . S 5 HOH A 179 979 979 HOH HOH . S 5 HOH A 180 980 980 HOH HOH . S 5 HOH A 181 981 981 HOH HOH . S 5 HOH A 182 982 982 HOH HOH . S 5 HOH A 183 983 983 HOH HOH . S 5 HOH A 184 984 984 HOH HOH . S 5 HOH A 185 985 985 HOH HOH . S 5 HOH A 186 986 988 HOH HOH . S 5 HOH A 187 987 986 HOH HOH . S 5 HOH A 188 988 987 HOH HOH . S 5 HOH A 189 989 989 HOH HOH . S 5 HOH A 190 990 990 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . M 3 39.486 44.682 -10.208 1 62.83 ? S DMS 712 A 1 HETATM 2 O O DMS . . . M 3 40.388 44.041 -9.204 1 56.84 ? O DMS 712 A 1 HETATM 3 C C1 DMS . . . M 3 39.751 46.475 -10.165 1 59.94 ? C1 DMS 712 A 1 HETATM 4 C C2 DMS . . . M 3 40.059 44.29 -11.89 1 53.54 ? C2 DMS 712 A 1 HETATM 5 H H11 DMS . . . M 3 39.068 46.949 -10.821 1 71.94 ? H11 DMS 712 A 1 HETATM 6 H H12 DMS . . . M 3 40.741 46.693 -10.469 1 71.94 ? H12 DMS 712 A 1 HETATM 7 H H13 DMS . . . M 3 39.598 46.831 -9.179 1 71.94 ? H13 DMS 712 A 1 HETATM 8 H H21 DMS . . . M 3 39.283 44.489 -12.583 1 64.26 ? H21 DMS 712 A 1 HETATM 9 H H22 DMS . . . M 3 40.325 43.267 -11.943 1 64.26 ? H22 DMS 712 A 1 HETATM 10 H H23 DMS . . . M 3 40.902 44.887 -12.124 1 64.26 ? H23 DMS 712 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #