data_6ZFA # _model_server_result.job_id L4OZY69Csg9tXLd4QBvneQ _model_server_result.datetime_utc '2024-11-13 09:07:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zfa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 6ZFA # _exptl.entry_id 6ZFA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZFA _cell.length_a 127.891 _cell.length_b 127.891 _cell.length_c 48.352 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZFA _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 MAN _pdbx_entity_branch_link.comp_id_2 MAN _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B MAN 1 A 1 MAN AiA 509 MAN 2 n B MAN 2 A 2 MAN AhA 508 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 H O3 IFM . AAA IFM 506 1_555 I C1 GLC . AAA GLC 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale2 B O2 MAN . A MAN 1 1_555 B C1 MAN . A MAN 2 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.469 ? covale ? covale3 B O2 MAN . A MAN 1 1_555 B C1 MAN . A MAN 2 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.45 ? metalc ? metalc1 A OE1 GLU 77 AAA GLU 157 1_555 D MG MG . AAA MG 502 5_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc2 A OG1 THR 176 AAA THR 256 1_555 E W1 TEW . AAA TEW 503 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc3 D MG MG . AAA MG 502 1_555 J O HOH . AAA HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc4 D MG MG . AAA MG 502 1_555 J O HOH . AAA HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc5 D MG MG . AAA MG 502 1_555 J O HOH . AAA HOH 627 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc6 D MG MG . AAA MG 502 1_555 J O HOH . AAA HOH 681 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc7 D MG MG . AAA MG 502 1_555 J O HOH . AAA HOH 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6ZFA _atom_sites.fract_transf_matrix[1][1] 0.007819 _atom_sites.fract_transf_matrix[1][2] 0.004514 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009029 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020682 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EPE AAA 1 501 501 EPE EPE . D 4 MG AAA 1 502 502 MG MG . E 5 TEW AAA 1 503 503 TEW TEW . F 5 TEW AAA 1 504 504 TEW TEW . G 5 TEW AAA 1 505 505 TEW TEW . H 6 IFM AAA 1 506 507 IFM IFM . I 7 GLC AAA 1 507 506 GLC GLC . J 8 HOH AAA 1 601 726 HOH HOH . J 8 HOH AAA 2 602 626 HOH HOH . J 8 HOH AAA 3 603 611 HOH HOH . J 8 HOH AAA 4 604 643 HOH HOH . J 8 HOH AAA 5 605 671 HOH HOH . J 8 HOH AAA 6 606 665 HOH HOH . J 8 HOH AAA 7 607 639 HOH HOH . J 8 HOH AAA 8 608 731 HOH HOH . J 8 HOH AAA 9 609 690 HOH HOH . J 8 HOH AAA 10 610 631 HOH HOH . J 8 HOH AAA 11 611 691 HOH HOH . J 8 HOH AAA 12 612 711 HOH HOH . J 8 HOH AAA 13 613 658 HOH HOH . J 8 HOH AAA 14 614 676 HOH HOH . J 8 HOH AAA 15 615 695 HOH HOH . J 8 HOH AAA 16 616 649 HOH HOH . J 8 HOH AAA 17 617 716 HOH HOH . J 8 HOH AAA 18 618 719 HOH HOH . J 8 HOH AAA 19 619 650 HOH HOH . J 8 HOH AAA 20 620 648 HOH HOH . J 8 HOH AAA 21 621 698 HOH HOH . J 8 HOH AAA 22 622 700 HOH HOH . J 8 HOH AAA 23 623 646 HOH HOH . J 8 HOH AAA 24 624 705 HOH HOH . J 8 HOH AAA 25 625 736 HOH HOH . J 8 HOH AAA 26 626 627 HOH HOH . J 8 HOH AAA 27 627 694 HOH HOH . J 8 HOH AAA 28 628 685 HOH HOH . J 8 HOH AAA 29 629 681 HOH HOH . J 8 HOH AAA 30 630 602 HOH HOH . J 8 HOH AAA 31 631 727 HOH HOH . J 8 HOH AAA 32 632 651 HOH HOH . J 8 HOH AAA 33 633 688 HOH HOH . J 8 HOH AAA 34 634 630 HOH HOH . J 8 HOH AAA 35 635 724 HOH HOH . J 8 HOH AAA 36 636 714 HOH HOH . J 8 HOH AAA 37 637 604 HOH HOH . J 8 HOH AAA 38 638 689 HOH HOH . J 8 HOH AAA 39 639 674 HOH HOH . J 8 HOH AAA 40 640 721 HOH HOH . J 8 HOH AAA 41 641 644 HOH HOH . J 8 HOH AAA 42 642 703 HOH HOH . J 8 HOH AAA 43 643 638 HOH HOH . J 8 HOH AAA 44 644 623 HOH HOH . J 8 HOH AAA 45 645 717 HOH HOH . J 8 HOH AAA 46 646 614 HOH HOH . J 8 HOH AAA 47 647 608 HOH HOH . J 8 HOH AAA 48 648 708 HOH HOH . J 8 HOH AAA 49 649 622 HOH HOH . J 8 HOH AAA 50 650 637 HOH HOH . J 8 HOH AAA 51 651 629 HOH HOH . J 8 HOH AAA 52 652 641 HOH HOH . J 8 HOH AAA 53 653 640 HOH HOH . J 8 HOH AAA 54 654 684 HOH HOH . J 8 HOH AAA 55 655 605 HOH HOH . J 8 HOH AAA 56 656 667 HOH HOH . J 8 HOH AAA 57 657 673 HOH HOH . J 8 HOH AAA 58 658 699 HOH HOH . J 8 HOH AAA 59 659 668 HOH HOH . J 8 HOH AAA 60 660 610 HOH HOH . J 8 HOH AAA 61 661 618 HOH HOH . J 8 HOH AAA 62 662 707 HOH HOH . J 8 HOH AAA 63 663 697 HOH HOH . J 8 HOH AAA 64 664 620 HOH HOH . J 8 HOH AAA 65 665 634 HOH HOH . J 8 HOH AAA 66 666 720 HOH HOH . J 8 HOH AAA 67 667 609 HOH HOH . J 8 HOH AAA 68 668 723 HOH HOH . J 8 HOH AAA 69 669 661 HOH HOH . J 8 HOH AAA 70 670 653 HOH HOH . J 8 HOH AAA 71 671 635 HOH HOH . J 8 HOH AAA 72 672 625 HOH HOH . J 8 HOH AAA 73 673 647 HOH HOH . J 8 HOH AAA 74 674 652 HOH HOH . J 8 HOH AAA 75 675 616 HOH HOH . J 8 HOH AAA 76 676 633 HOH HOH . J 8 HOH AAA 77 677 704 HOH HOH . J 8 HOH AAA 78 678 734 HOH HOH . J 8 HOH AAA 79 679 683 HOH HOH . J 8 HOH AAA 80 680 666 HOH HOH . J 8 HOH AAA 81 681 693 HOH HOH . J 8 HOH AAA 82 682 619 HOH HOH . J 8 HOH AAA 83 683 678 HOH HOH . J 8 HOH AAA 84 684 696 HOH HOH . J 8 HOH AAA 85 685 603 HOH HOH . J 8 HOH AAA 86 686 617 HOH HOH . J 8 HOH AAA 87 687 725 HOH HOH . J 8 HOH AAA 88 688 722 HOH HOH . J 8 HOH AAA 89 689 735 HOH HOH . J 8 HOH AAA 90 690 679 HOH HOH . J 8 HOH AAA 91 691 636 HOH HOH . J 8 HOH AAA 92 692 702 HOH HOH . J 8 HOH AAA 93 693 675 HOH HOH . J 8 HOH AAA 94 694 642 HOH HOH . J 8 HOH AAA 95 695 718 HOH HOH . J 8 HOH AAA 96 696 656 HOH HOH . J 8 HOH AAA 97 697 612 HOH HOH . J 8 HOH AAA 98 698 692 HOH HOH . J 8 HOH AAA 99 699 607 HOH HOH . J 8 HOH AAA 100 700 615 HOH HOH . J 8 HOH AAA 101 701 659 HOH HOH . J 8 HOH AAA 102 702 606 HOH HOH . J 8 HOH AAA 103 703 621 HOH HOH . J 8 HOH AAA 104 704 657 HOH HOH . J 8 HOH AAA 105 705 706 HOH HOH . J 8 HOH AAA 106 706 682 HOH HOH . J 8 HOH AAA 107 707 732 HOH HOH . J 8 HOH AAA 108 708 713 HOH HOH . J 8 HOH AAA 109 709 729 HOH HOH . J 8 HOH AAA 110 710 709 HOH HOH . J 8 HOH AAA 111 711 680 HOH HOH . J 8 HOH AAA 112 712 715 HOH HOH . J 8 HOH AAA 113 713 655 HOH HOH . J 8 HOH AAA 114 714 645 HOH HOH . J 8 HOH AAA 115 715 728 HOH HOH . J 8 HOH AAA 116 716 632 HOH HOH . J 8 HOH AAA 117 717 664 HOH HOH . J 8 HOH AAA 118 718 670 HOH HOH . J 8 HOH AAA 119 719 701 HOH HOH . J 8 HOH AAA 120 720 686 HOH HOH . J 8 HOH AAA 121 721 663 HOH HOH . J 8 HOH AAA 122 722 712 HOH HOH . J 8 HOH AAA 123 723 624 HOH HOH . J 8 HOH AAA 124 724 613 HOH HOH . J 8 HOH AAA 125 725 662 HOH HOH . J 8 HOH AAA 126 726 660 HOH HOH . J 8 HOH AAA 127 727 628 HOH HOH . J 8 HOH AAA 128 728 654 HOH HOH . J 8 HOH AAA 129 729 669 HOH HOH . J 8 HOH AAA 130 730 733 HOH HOH . J 8 HOH AAA 131 731 601 HOH HOH . J 8 HOH AAA 132 732 710 HOH HOH . J 8 HOH AAA 133 733 677 HOH HOH . J 8 HOH AAA 134 734 730 HOH HOH . J 8 HOH AAA 135 735 687 HOH HOH . J 8 HOH AAA 136 736 672 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 23.129 _atom_site.Cartn_y 31.22 _atom_site.Cartn_z 2.063 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 502 _atom_site.auth_asym_id AAA _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #