data_6ZFK # _model_server_result.job_id SuHL54dXhNsO84P14GGamg _model_server_result.datetime_utc '2024-11-09 02:33:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zfk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6ZFK # _exptl.entry_id 6ZFK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZFK _cell.length_a 54.466 _cell.length_b 58.213 _cell.length_c 66.981 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZFK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc5 D CA CA . A CA 303 1_555 J O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc6 D CA CA . A CA 303 1_555 J O HOH . A HOH 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 120 n n S C1 DMS sing 121 n n S C2 DMS sing 122 n n C1 H11 DMS sing 123 n n C1 H12 DMS sing 124 n n C1 H13 DMS sing 125 n n C2 H21 DMS sing 126 n n C2 H22 DMS sing 127 n n C2 H23 DMS sing 128 n n # _atom_sites.entry_id 6ZFK _atom_sites.fract_transf_matrix[1][1] 0.01836 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017178 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01493 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 301 1 DMS DMS . C 2 DMS A 1 302 3 DMS DMS . D 3 CA A 1 303 1 CA CA . E 4 SO4 A 1 304 1 SO4 SO4 . F 4 SO4 A 1 305 5 SO4 SO4 . G 4 SO4 A 1 306 6 SO4 SO4 . H 5 479 A 1 307 1 479 J24 . I 5 479 A 1 308 2 479 J24 . J 6 HOH A 1 401 253 HOH HOH . J 6 HOH A 2 402 124 HOH HOH . J 6 HOH A 3 403 82 HOH HOH . J 6 HOH A 4 404 187 HOH HOH . J 6 HOH A 5 405 203 HOH HOH . J 6 HOH A 6 406 2 HOH HOH . J 6 HOH A 7 407 41 HOH HOH . J 6 HOH A 8 408 26 HOH HOH . J 6 HOH A 9 409 103 HOH HOH . J 6 HOH A 10 410 125 HOH HOH . J 6 HOH A 11 411 251 HOH HOH . J 6 HOH A 12 412 105 HOH HOH . J 6 HOH A 13 413 155 HOH HOH . J 6 HOH A 14 414 97 HOH HOH . J 6 HOH A 15 415 175 HOH HOH . J 6 HOH A 16 416 218 HOH HOH . J 6 HOH A 17 417 151 HOH HOH . J 6 HOH A 18 418 127 HOH HOH . J 6 HOH A 19 419 195 HOH HOH . J 6 HOH A 20 420 49 HOH HOH . J 6 HOH A 21 421 135 HOH HOH . J 6 HOH A 22 422 212 HOH HOH . J 6 HOH A 23 423 58 HOH HOH . J 6 HOH A 24 424 271 HOH HOH . J 6 HOH A 25 425 60 HOH HOH . J 6 HOH A 26 426 194 HOH HOH . J 6 HOH A 27 427 22 HOH HOH . J 6 HOH A 28 428 10 HOH HOH . J 6 HOH A 29 429 165 HOH HOH . J 6 HOH A 30 430 81 HOH HOH . J 6 HOH A 31 431 46 HOH HOH . J 6 HOH A 32 432 38 HOH HOH . J 6 HOH A 33 433 110 HOH HOH . J 6 HOH A 34 434 111 HOH HOH . J 6 HOH A 35 435 28 HOH HOH . J 6 HOH A 36 436 137 HOH HOH . J 6 HOH A 37 437 237 HOH HOH . J 6 HOH A 38 438 104 HOH HOH . J 6 HOH A 39 439 275 HOH HOH . J 6 HOH A 40 440 117 HOH HOH . J 6 HOH A 41 441 186 HOH HOH . J 6 HOH A 42 442 166 HOH HOH . J 6 HOH A 43 443 48 HOH HOH . J 6 HOH A 44 444 50 HOH HOH . J 6 HOH A 45 445 27 HOH HOH . J 6 HOH A 46 446 162 HOH HOH . J 6 HOH A 47 447 18 HOH HOH . J 6 HOH A 48 448 19 HOH HOH . J 6 HOH A 49 449 106 HOH HOH . J 6 HOH A 50 450 100 HOH HOH . J 6 HOH A 51 451 277 HOH HOH . J 6 HOH A 52 452 139 HOH HOH . J 6 HOH A 53 453 154 HOH HOH . J 6 HOH A 54 454 148 HOH HOH . J 6 HOH A 55 455 164 HOH HOH . J 6 HOH A 56 456 3 HOH HOH . J 6 HOH A 57 457 227 HOH HOH . J 6 HOH A 58 458 78 HOH HOH . J 6 HOH A 59 459 7 HOH HOH . J 6 HOH A 60 460 128 HOH HOH . J 6 HOH A 61 461 55 HOH HOH . J 6 HOH A 62 462 96 HOH HOH . J 6 HOH A 63 463 9 HOH HOH . J 6 HOH A 64 464 20 HOH HOH . J 6 HOH A 65 465 6 HOH HOH . J 6 HOH A 66 466 156 HOH HOH . J 6 HOH A 67 467 61 HOH HOH . J 6 HOH A 68 468 63 HOH HOH . J 6 HOH A 69 469 95 HOH HOH . J 6 HOH A 70 470 36 HOH HOH . J 6 HOH A 71 471 67 HOH HOH . J 6 HOH A 72 472 29 HOH HOH . J 6 HOH A 73 473 143 HOH HOH . J 6 HOH A 74 474 92 HOH HOH . J 6 HOH A 75 475 161 HOH HOH . J 6 HOH A 76 476 23 HOH HOH . J 6 HOH A 77 477 132 HOH HOH . J 6 HOH A 78 478 278 HOH HOH . J 6 HOH A 79 479 32 HOH HOH . J 6 HOH A 80 480 8 HOH HOH . J 6 HOH A 81 481 40 HOH HOH . J 6 HOH A 82 482 42 HOH HOH . J 6 HOH A 83 483 64 HOH HOH . J 6 HOH A 84 484 76 HOH HOH . J 6 HOH A 85 485 167 HOH HOH . J 6 HOH A 86 486 181 HOH HOH . J 6 HOH A 87 487 116 HOH HOH . J 6 HOH A 88 488 30 HOH HOH . J 6 HOH A 89 489 52 HOH HOH . J 6 HOH A 90 490 130 HOH HOH . J 6 HOH A 91 491 114 HOH HOH . J 6 HOH A 92 492 219 HOH HOH . J 6 HOH A 93 493 73 HOH HOH . J 6 HOH A 94 494 75 HOH HOH . J 6 HOH A 95 495 141 HOH HOH . J 6 HOH A 96 496 126 HOH HOH . J 6 HOH A 97 497 59 HOH HOH . J 6 HOH A 98 498 11 HOH HOH . J 6 HOH A 99 499 62 HOH HOH . J 6 HOH A 100 500 85 HOH HOH . J 6 HOH A 101 501 274 HOH HOH . J 6 HOH A 102 502 172 HOH HOH . J 6 HOH A 103 503 150 HOH HOH . J 6 HOH A 104 504 5 HOH HOH . J 6 HOH A 105 505 94 HOH HOH . J 6 HOH A 106 506 21 HOH HOH . J 6 HOH A 107 507 12 HOH HOH . J 6 HOH A 108 508 51 HOH HOH . J 6 HOH A 109 509 25 HOH HOH . J 6 HOH A 110 510 65 HOH HOH . J 6 HOH A 111 511 232 HOH HOH . J 6 HOH A 112 512 88 HOH HOH . J 6 HOH A 113 513 197 HOH HOH . J 6 HOH A 114 514 188 HOH HOH . J 6 HOH A 115 515 259 HOH HOH . J 6 HOH A 116 516 272 HOH HOH . J 6 HOH A 117 517 15 HOH HOH . J 6 HOH A 118 518 149 HOH HOH . J 6 HOH A 119 519 43 HOH HOH . J 6 HOH A 120 520 84 HOH HOH . J 6 HOH A 121 521 56 HOH HOH . J 6 HOH A 122 522 24 HOH HOH . J 6 HOH A 123 523 101 HOH HOH . J 6 HOH A 124 524 279 HOH HOH . J 6 HOH A 125 525 217 HOH HOH . J 6 HOH A 126 526 170 HOH HOH . J 6 HOH A 127 527 80 HOH HOH . J 6 HOH A 128 528 182 HOH HOH . J 6 HOH A 129 529 173 HOH HOH . J 6 HOH A 130 530 17 HOH HOH . J 6 HOH A 131 531 33 HOH HOH . J 6 HOH A 132 532 69 HOH HOH . J 6 HOH A 133 533 37 HOH HOH . J 6 HOH A 134 534 68 HOH HOH . J 6 HOH A 135 535 107 HOH HOH . J 6 HOH A 136 536 171 HOH HOH . J 6 HOH A 137 537 44 HOH HOH . J 6 HOH A 138 538 140 HOH HOH . J 6 HOH A 139 539 31 HOH HOH . J 6 HOH A 140 540 134 HOH HOH . J 6 HOH A 141 541 79 HOH HOH . J 6 HOH A 142 542 54 HOH HOH . J 6 HOH A 143 543 236 HOH HOH . J 6 HOH A 144 544 254 HOH HOH . J 6 HOH A 145 545 120 HOH HOH . J 6 HOH A 146 546 200 HOH HOH . J 6 HOH A 147 547 282 HOH HOH . J 6 HOH A 148 548 202 HOH HOH . J 6 HOH A 149 549 280 HOH HOH . J 6 HOH A 150 550 112 HOH HOH . J 6 HOH A 151 551 91 HOH HOH . J 6 HOH A 152 552 71 HOH HOH . J 6 HOH A 153 553 72 HOH HOH . J 6 HOH A 154 554 136 HOH HOH . J 6 HOH A 155 555 98 HOH HOH . J 6 HOH A 156 556 13 HOH HOH . J 6 HOH A 157 557 131 HOH HOH . J 6 HOH A 158 558 146 HOH HOH . J 6 HOH A 159 559 180 HOH HOH . J 6 HOH A 160 560 122 HOH HOH . J 6 HOH A 161 561 234 HOH HOH . J 6 HOH A 162 562 144 HOH HOH . J 6 HOH A 163 563 174 HOH HOH . J 6 HOH A 164 564 121 HOH HOH . J 6 HOH A 165 565 109 HOH HOH . J 6 HOH A 166 566 204 HOH HOH . J 6 HOH A 167 567 178 HOH HOH . J 6 HOH A 168 568 35 HOH HOH . J 6 HOH A 169 569 93 HOH HOH . J 6 HOH A 170 570 265 HOH HOH . J 6 HOH A 171 571 4 HOH HOH . J 6 HOH A 172 572 113 HOH HOH . J 6 HOH A 173 573 89 HOH HOH . J 6 HOH A 174 574 210 HOH HOH . J 6 HOH A 175 575 123 HOH HOH . J 6 HOH A 176 576 246 HOH HOH . J 6 HOH A 177 577 39 HOH HOH . J 6 HOH A 178 578 226 HOH HOH . J 6 HOH A 179 579 211 HOH HOH . J 6 HOH A 180 580 263 HOH HOH . J 6 HOH A 181 581 66 HOH HOH . J 6 HOH A 182 582 249 HOH HOH . J 6 HOH A 183 583 233 HOH HOH . J 6 HOH A 184 584 47 HOH HOH . J 6 HOH A 185 585 147 HOH HOH . J 6 HOH A 186 586 34 HOH HOH . J 6 HOH A 187 587 196 HOH HOH . J 6 HOH A 188 588 145 HOH HOH . J 6 HOH A 189 589 208 HOH HOH . J 6 HOH A 190 590 115 HOH HOH . J 6 HOH A 191 591 276 HOH HOH . J 6 HOH A 192 592 214 HOH HOH . J 6 HOH A 193 593 244 HOH HOH . J 6 HOH A 194 594 77 HOH HOH . J 6 HOH A 195 595 184 HOH HOH . J 6 HOH A 196 596 264 HOH HOH . J 6 HOH A 197 597 229 HOH HOH . J 6 HOH A 198 598 157 HOH HOH . J 6 HOH A 199 599 267 HOH HOH . J 6 HOH A 200 600 257 HOH HOH . J 6 HOH A 201 601 241 HOH HOH . J 6 HOH A 202 602 283 HOH HOH . J 6 HOH A 203 603 269 HOH HOH . J 6 HOH A 204 604 222 HOH HOH . J 6 HOH A 205 605 260 HOH HOH . J 6 HOH A 206 606 168 HOH HOH . J 6 HOH A 207 607 90 HOH HOH . J 6 HOH A 208 608 108 HOH HOH . J 6 HOH A 209 609 216 HOH HOH . J 6 HOH A 210 610 138 HOH HOH . J 6 HOH A 211 611 198 HOH HOH . J 6 HOH A 212 612 87 HOH HOH . J 6 HOH A 213 613 160 HOH HOH . J 6 HOH A 214 614 239 HOH HOH . J 6 HOH A 215 615 262 HOH HOH . J 6 HOH A 216 616 153 HOH HOH . J 6 HOH A 217 617 238 HOH HOH . J 6 HOH A 218 618 261 HOH HOH . J 6 HOH A 219 619 213 HOH HOH . J 6 HOH A 220 620 119 HOH HOH . J 6 HOH A 221 621 270 HOH HOH . J 6 HOH A 222 622 159 HOH HOH . J 6 HOH A 223 623 74 HOH HOH . J 6 HOH A 224 624 256 HOH HOH . J 6 HOH A 225 625 231 HOH HOH . J 6 HOH A 226 626 243 HOH HOH . J 6 HOH A 227 627 158 HOH HOH . J 6 HOH A 228 628 177 HOH HOH . J 6 HOH A 229 629 242 HOH HOH . J 6 HOH A 230 630 221 HOH HOH . J 6 HOH A 231 631 129 HOH HOH . J 6 HOH A 232 632 199 HOH HOH . J 6 HOH A 233 633 86 HOH HOH . J 6 HOH A 234 634 248 HOH HOH . J 6 HOH A 235 635 83 HOH HOH . J 6 HOH A 236 636 133 HOH HOH . J 6 HOH A 237 637 191 HOH HOH . J 6 HOH A 238 638 245 HOH HOH . J 6 HOH A 239 639 258 HOH HOH . J 6 HOH A 240 640 255 HOH HOH . J 6 HOH A 241 641 273 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . B 2 -10.904 -20.214 5.799 0.87 9.26 ? S DMS 301 A 1 HETATM 2 O O DMS . . . B 2 -9.559 -20.843 5.964 0.87 8.33 ? O DMS 301 A 1 HETATM 3 C C1 DMS . . . B 2 -11.473 -19.731 7.451 0.87 10.94 ? C1 DMS 301 A 1 HETATM 4 C C2 DMS . . . B 2 -10.646 -18.555 5.136 0.87 9.44 ? C2 DMS 301 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #