data_6ZFS # _model_server_result.job_id zklpEns2AlHv9eJWVbkGlA _model_server_result.datetime_utc '2024-11-18 14:34:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zfs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":202}' # _entry.id 6ZFS # _exptl.entry_id 6ZFS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 678.94 _entity.id 21 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZFS _cell.length_a 209.56 _cell.length_b 209.56 _cell.length_c 343.348 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZFS _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 21 _struct_asym.id Y _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 H SG CYS 11 H CYS 24 1_555 H SG CYS 55 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 H SG CYS 27 H CYS 40 1_555 H SG CYS 41 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 C NE2 HIS 82 C HIS 83 1_555 N FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc2 C NE2 HIS 96 C HIS 97 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc3 C NE2 HIS 181 C HIS 182 1_555 N FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc4 C NE2 HIS 195 C HIS 196 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc5 D NE2 HIS 40 D HIS 41 1_555 U FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc6 D SD MET 159 D MET 160 1_555 U FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc7 E SG CYS 158 E CYS 158 1_555 X FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? # _chem_comp.formula 'C36 H73 N O8 P 1' _chem_comp.formula_weight 678.94 _chem_comp.id PX4 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 PX4 sing 1056 n n O1 H1P PX4 sing 1057 n n O2 P1 PX4 doub 1058 n n P1 O3 PX4 sing 1059 n n P1 O4 PX4 sing 1060 n n O3 C1 PX4 sing 1061 n n C1 C2 PX4 sing 1062 n n C1 H1 PX4 sing 1063 n n C1 H2 PX4 sing 1064 n n C2 N1 PX4 sing 1065 n n C2 H3 PX4 sing 1066 n n C2 H4 PX4 sing 1067 n n N1 C3 PX4 sing 1068 n n N1 C4 PX4 sing 1069 n n N1 C5 PX4 sing 1070 n n C3 H5 PX4 sing 1071 n n C3 H6 PX4 sing 1072 n n C3 H7 PX4 sing 1073 n n C4 H8 PX4 sing 1074 n n C4 H9 PX4 sing 1075 n n C4 H10 PX4 sing 1076 n n C5 H11 PX4 sing 1077 n n C5 H12 PX4 sing 1078 n n C5 H13 PX4 sing 1079 n n O4 C6 PX4 sing 1080 n n C6 C7 PX4 sing 1081 n n C6 H14 PX4 sing 1082 n n C6 H15 PX4 sing 1083 n n C7 C8 PX4 sing 1084 n n C7 O7 PX4 sing 1085 n n C7 H16 PX4 sing 1086 n n C8 O5 PX4 sing 1087 n n C8 H17 PX4 sing 1088 n n C8 H18 PX4 sing 1089 n n O5 C9 PX4 sing 1090 n n C9 O6 PX4 doub 1091 n n C9 C10 PX4 sing 1092 n n C10 C11 PX4 sing 1093 n n C10 H19 PX4 sing 1094 n n C10 H20 PX4 sing 1095 n n C11 C12 PX4 sing 1096 n n C11 H21 PX4 sing 1097 n n C11 H22 PX4 sing 1098 n n C12 C13 PX4 sing 1099 n n C12 H23 PX4 sing 1100 n n C12 H24 PX4 sing 1101 n n C13 C14 PX4 sing 1102 n n C13 H25 PX4 sing 1103 n n C13 H26 PX4 sing 1104 n n C14 C15 PX4 sing 1105 n n C14 H27 PX4 sing 1106 n n C14 H28 PX4 sing 1107 n n C15 C16 PX4 sing 1108 n n C15 H29 PX4 sing 1109 n n C15 H30 PX4 sing 1110 n n C16 C17 PX4 sing 1111 n n C16 H31 PX4 sing 1112 n n C16 H32 PX4 sing 1113 n n C17 C18 PX4 sing 1114 n n C17 H33 PX4 sing 1115 n n C17 H34 PX4 sing 1116 n n C18 C19 PX4 sing 1117 n n C18 H35 PX4 sing 1118 n n C18 H36 PX4 sing 1119 n n C19 C20 PX4 sing 1120 n n C19 H37 PX4 sing 1121 n n C19 H38 PX4 sing 1122 n n C20 C21 PX4 sing 1123 n n C20 H39 PX4 sing 1124 n n C20 H40 PX4 sing 1125 n n C21 C22 PX4 sing 1126 n n C21 H41 PX4 sing 1127 n n C21 H42 PX4 sing 1128 n n C22 H43 PX4 sing 1129 n n C22 H44 PX4 sing 1130 n n C22 H45 PX4 sing 1131 n n O7 C23 PX4 sing 1132 n n C23 O8 PX4 doub 1133 n n C23 C24 PX4 sing 1134 n n C24 C25 PX4 sing 1135 n n C24 H46 PX4 sing 1136 n n C24 H47 PX4 sing 1137 n n C25 C26 PX4 sing 1138 n n C25 H48 PX4 sing 1139 n n C25 H49 PX4 sing 1140 n n C26 C27 PX4 sing 1141 n n C26 H50 PX4 sing 1142 n n C26 H51 PX4 sing 1143 n n C27 C28 PX4 sing 1144 n n C27 H52 PX4 sing 1145 n n C27 H53 PX4 sing 1146 n n C28 C29 PX4 sing 1147 n n C28 H54 PX4 sing 1148 n n C28 H55 PX4 sing 1149 n n C29 C30 PX4 sing 1150 n n C29 H56 PX4 sing 1151 n n C29 H57 PX4 sing 1152 n n C30 C31 PX4 sing 1153 n n C30 H58 PX4 sing 1154 n n C30 H59 PX4 sing 1155 n n C31 C32 PX4 sing 1156 n n C31 H60 PX4 sing 1157 n n C31 H61 PX4 sing 1158 n n C32 C33 PX4 sing 1159 n n C32 H62 PX4 sing 1160 n n C32 H63 PX4 sing 1161 n n C33 C34 PX4 sing 1162 n n C33 H64 PX4 sing 1163 n n C33 H65 PX4 sing 1164 n n C34 C35 PX4 sing 1165 n n C34 H66 PX4 sing 1166 n n C34 H67 PX4 sing 1167 n n C35 C36 PX4 sing 1168 n n C35 H68 PX4 sing 1169 n n C35 H69 PX4 sing 1170 n n C36 H70 PX4 sing 1171 n n C36 H71 PX4 sing 1172 n n C36 H72 PX4 sing 1173 n n # _atom_sites.entry_id 6ZFS _atom_sites.fract_transf_matrix[1][1] 0.004772 _atom_sites.fract_transf_matrix[1][2] 0.002755 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00551 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 11 6PE A 1 501 502 6PE 6PE . L 12 PO4 A 1 502 501 PO4 PO4 . M 13 CDL A 1 503 401 CDL CDL . N 14 HEM C 1 401 402 HEM HEM . O 14 HEM C 1 402 403 HEM HEM . P 15 LMT C 1 403 405 LMT LMT . Q 16 PG4 C 1 404 407 PG4 PG4 . R 13 CDL C 1 405 408 CDL CDL . S 17 PEE C 1 406 409 PEE PEE . T 18 JGW C 1 407 404 JGW 1U4 . U 19 HEC D 1 501 501 HEC HEC . V 12 PO4 D 1 502 502 PO4 PO4 . W 13 CDL D 1 503 503 CDL CDL . X 20 FES E 1 201 201 FES FES . Y 21 PX4 E 1 202 202 PX4 PX4 . Z 12 PO4 E 1 203 203 PO4 PO4 . AA 17 PEE E 1 204 204 PEE PEE . BA 13 CDL E 1 205 205 CDL CDL . CA 12 PO4 F 1 501 501 PO4 PO4 . DA 13 CDL G 1 101 504 CDL CDL . EA 12 PO4 G 1 102 101 PO4 PO4 . FA 12 PO4 G 1 103 102 PO4 PO4 . GA 12 PO4 G 1 104 103 PO4 PO4 . HA 22 HOH A 1 601 505 HOH HOH . HA 22 HOH A 2 602 509 HOH HOH . HA 22 HOH A 3 603 504 HOH HOH . HA 22 HOH A 4 604 510 HOH HOH . HA 22 HOH A 5 605 508 HOH HOH . HA 22 HOH A 6 606 505 HOH HOH . HA 22 HOH A 7 607 507 HOH HOH . HA 22 HOH A 8 608 211 HOH HOH . HA 22 HOH A 9 609 503 HOH HOH . HA 22 HOH A 10 610 506 HOH HOH . IA 22 HOH B 1 501 503 HOH HOH . IA 22 HOH B 2 502 502 HOH HOH . IA 22 HOH B 3 503 504 HOH HOH . IA 22 HOH B 4 504 505 HOH HOH . IA 22 HOH B 5 505 501 HOH HOH . JA 22 HOH C 1 501 412 HOH HOH . JA 22 HOH C 2 502 413 HOH HOH . JA 22 HOH C 3 503 416 HOH HOH . JA 22 HOH C 4 504 417 HOH HOH . JA 22 HOH C 5 505 411 HOH HOH . JA 22 HOH C 6 506 414 HOH HOH . JA 22 HOH C 7 507 415 HOH HOH . JA 22 HOH C 8 508 410 HOH HOH . KA 22 HOH D 1 601 507 HOH HOH . KA 22 HOH D 2 602 207 HOH HOH . KA 22 HOH D 3 603 506 HOH HOH . LA 22 HOH E 1 301 210 HOH HOH . LA 22 HOH E 2 302 208 HOH HOH . LA 22 HOH E 3 303 206 HOH HOH . LA 22 HOH E 4 304 209 HOH HOH . MA 22 HOH F 1 601 503 HOH HOH . MA 22 HOH F 2 602 502 HOH HOH . MA 22 HOH F 3 603 506 HOH HOH . MA 22 HOH F 4 604 504 HOH HOH . NA 22 HOH G 1 201 104 HOH HOH . OA 22 HOH J 1 101 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PX4 . . . Y 21 -66.724 -53.422 13.597 1 150.59 -1 O1 PX4 202 E 1 HETATM 2 O O2 PX4 . . . Y 21 -64.789 -52.03 12.595 1 147.34 ? O2 PX4 202 E 1 HETATM 3 P P1 PX4 . . . Y 21 -65.666 -53.263 12.525 1 150.12 ? P1 PX4 202 E 1 HETATM 4 O O3 PX4 . . . Y 21 -66.379 -53.343 11.078 1 148.75 ? O3 PX4 202 E 1 HETATM 5 C C1 PX4 . . . Y 21 -65.896 -52.706 9.892 1 145 ? C1 PX4 202 E 1 HETATM 6 C C2 PX4 . . . Y 21 -67.136 -52.278 9.092 1 143.45 ? C2 PX4 202 E 1 HETATM 7 N N1 PX4 . . . Y 21 -66.952 -51.807 7.706 1 141.85 ? N1 PX4 202 E 1 HETATM 8 C C3 PX4 . . . Y 21 -68.209 -51.952 6.965 1 142.75 ? C3 PX4 202 E 1 HETATM 9 C C4 PX4 . . . Y 21 -66.653 -50.382 7.675 1 140.46 ? C4 PX4 202 E 1 HETATM 10 C C5 PX4 . . . Y 21 -65.921 -52.577 7.006 1 142.29 ? C5 PX4 202 E 1 HETATM 11 O O4 PX4 . . . Y 21 -64.751 -54.614 12.472 1 152.17 ? O4 PX4 202 E 1 HETATM 12 C C6 PX4 . . . Y 21 -65.15 -55.926 12.936 1 150.27 ? C6 PX4 202 E 1 HETATM 13 C C7 PX4 . . . Y 21 -63.991 -56.938 13.134 1 149.69 ? C7 PX4 202 E 1 HETATM 14 C C8 PX4 . . . Y 21 -63.532 -57.564 11.813 1 147.89 ? C8 PX4 202 E 1 HETATM 15 O O5 PX4 . . . Y 21 -64.602 -58.064 11.007 1 147.58 ? O5 PX4 202 E 1 HETATM 16 C C9 PX4 . . . Y 21 -64.546 -58.009 9.541 1 146.53 ? C9 PX4 202 E 1 HETATM 17 O O6 PX4 . . . Y 21 -65.067 -57.033 8.999 1 146.74 ? O6 PX4 202 E 1 HETATM 18 C C10 PX4 . . . Y 21 -63.925 -59.147 8.721 1 142.9 ? C10 PX4 202 E 1 HETATM 19 C C11 PX4 . . . Y 21 -62.415 -59.07 8.432 1 137.53 ? C11 PX4 202 E 1 HETATM 20 C C12 PX4 . . . Y 21 -61.72 -60.426 8.581 1 134.84 ? C12 PX4 202 E 1 HETATM 21 C C13 PX4 . . . Y 21 -60.675 -60.722 7.5 1 135.42 ? C13 PX4 202 E 1 HETATM 22 C C14 PX4 . . . Y 21 -59.554 -61.633 8.011 1 136.33 ? C14 PX4 202 E 1 HETATM 23 C C15 PX4 . . . Y 21 -59.78 -63.117 7.677 1 139.68 ? C15 PX4 202 E 1 HETATM 24 C C16 PX4 . . . Y 21 -59.663 -64.075 8.882 1 140.92 ? C16 PX4 202 E 1 HETATM 25 C C17 PX4 . . . Y 21 -60.66 -65.252 8.872 1 140.4 ? C17 PX4 202 E 1 HETATM 26 C C18 PX4 . . . Y 21 -60.228 -66.43 9.768 1 138.38 ? C18 PX4 202 E 1 HETATM 27 C C19 PX4 . . . Y 21 -60.552 -67.815 9.173 1 137.92 ? C19 PX4 202 E 1 HETATM 28 C C20 PX4 . . . Y 21 -59.383 -68.823 9.128 1 137.21 ? C20 PX4 202 E 1 HETATM 29 C C21 PX4 . . . Y 21 -59.05 -69.358 7.719 1 136.2 ? C21 PX4 202 E 1 HETATM 30 C C22 PX4 . . . Y 21 -57.885 -70.337 7.686 1 132.82 ? C22 PX4 202 E 1 HETATM 31 O O7 PX4 . . . Y 21 -62.814 -56.339 13.716 1 152.1 ? O7 PX4 202 E 1 HETATM 32 C C23 PX4 . . . Y 21 -62.314 -56.808 15.024 1 150.57 ? C23 PX4 202 E 1 HETATM 33 O O8 PX4 . . . Y 21 -62.804 -56.324 16.045 1 151.87 ? O8 PX4 202 E 1 HETATM 34 C C24 PX4 . . . Y 21 -61.195 -57.846 15.118 1 146.06 ? C24 PX4 202 E 1 HETATM 35 C C25 PX4 . . . Y 21 -59.978 -57.378 15.93 1 140.49 ? C25 PX4 202 E 1 HETATM 36 C C26 PX4 . . . Y 21 -60.09 -57.718 17.418 1 136.67 ? C26 PX4 202 E 1 HETATM 37 C C27 PX4 . . . Y 21 -58.982 -58.659 17.882 1 134.76 ? C27 PX4 202 E 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 37 #