data_6ZFS # _model_server_result.job_id ZuXTnnlR8O7AGBYRBHyedg _model_server_result.datetime_utc '2024-11-18 14:24:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zfs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":402}' # _entry.id 6ZFS # _exptl.entry_id 6ZFS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZFS _cell.length_a 209.56 _cell.length_b 209.56 _cell.length_c 343.348 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZFS _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 N N N ? 14 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 H SG CYS 11 H CYS 24 1_555 H SG CYS 55 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 H SG CYS 27 H CYS 40 1_555 H SG CYS 41 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 C NE2 HIS 82 C HIS 83 1_555 N FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc2 C NE2 HIS 96 C HIS 97 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc3 C NE2 HIS 181 C HIS 182 1_555 N FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc4 C NE2 HIS 195 C HIS 196 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc5 D NE2 HIS 40 D HIS 41 1_555 U FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc6 D SD MET 159 D MET 160 1_555 U FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc7 E SG CYS 158 E CYS 158 1_555 X FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 531 n n CHA C4D HEM doub 532 n n CHA HHA HEM sing 533 n n CHB C4A HEM sing 534 n n CHB C1B HEM doub 535 n n CHB HHB HEM sing 536 n n CHC C4B HEM sing 537 n n CHC C1C HEM doub 538 n n CHC HHC HEM sing 539 n n CHD C4C HEM doub 540 n n CHD C1D HEM sing 541 n n CHD HHD HEM sing 542 n n C1A C2A HEM doub 543 n y C1A NA HEM sing 544 n y C2A C3A HEM sing 545 n y C2A CAA HEM sing 546 n n C3A C4A HEM doub 547 n y C3A CMA HEM sing 548 n n C4A NA HEM sing 549 n y CMA HMA HEM sing 550 n n CMA HMAA HEM sing 551 n n CMA HMAB HEM sing 552 n n CAA CBA HEM sing 553 n n CAA HAA HEM sing 554 n n CAA HAAA HEM sing 555 n n CBA CGA HEM sing 556 n n CBA HBA HEM sing 557 n n CBA HBAA HEM sing 558 n n CGA O1A HEM doub 559 n n CGA O2A HEM sing 560 n n C1B C2B HEM sing 561 n n C1B NB HEM sing 562 n n C2B C3B HEM doub 563 n n C2B CMB HEM sing 564 n n C3B C4B HEM sing 565 n n C3B CAB HEM sing 566 n n C4B NB HEM doub 567 n n CMB HMB HEM sing 568 n n CMB HMBA HEM sing 569 n n CMB HMBB HEM sing 570 n n CAB CBB HEM doub 571 n n CAB HAB HEM sing 572 n n CBB HBB HEM sing 573 n n CBB HBBA HEM sing 574 n n C1C C2C HEM sing 575 n y C1C NC HEM sing 576 n y C2C C3C HEM doub 577 n y C2C CMC HEM sing 578 n n C3C C4C HEM sing 579 n y C3C CAC HEM sing 580 n n C4C NC HEM sing 581 n y CMC HMC HEM sing 582 n n CMC HMCA HEM sing 583 n n CMC HMCB HEM sing 584 n n CAC CBC HEM doub 585 n n CAC HAC HEM sing 586 n n CBC HBC HEM sing 587 n n CBC HBCA HEM sing 588 n n C1D C2D HEM sing 589 n n C1D ND HEM doub 590 n n C2D C3D HEM doub 591 n n C2D CMD HEM sing 592 n n C3D C4D HEM sing 593 n n C3D CAD HEM sing 594 n n C4D ND HEM sing 595 n n CMD HMD HEM sing 596 n n CMD HMDA HEM sing 597 n n CMD HMDB HEM sing 598 n n CAD CBD HEM sing 599 n n CAD HAD HEM sing 600 n n CAD HADA HEM sing 601 n n CBD CGD HEM sing 602 n n CBD HBD HEM sing 603 n n CBD HBDA HEM sing 604 n n CGD O1D HEM doub 605 n n CGD O2D HEM sing 606 n n O2A H2A HEM sing 607 n n O2D H2D HEM sing 608 n n FE NA HEM sing 609 n n FE NB HEM sing 610 n n FE NC HEM sing 611 n n FE ND HEM sing 612 n n # _atom_sites.entry_id 6ZFS _atom_sites.fract_transf_matrix[1][1] 0.004772 _atom_sites.fract_transf_matrix[1][2] 0.002755 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00551 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 11 6PE A 1 501 502 6PE 6PE . L 12 PO4 A 1 502 501 PO4 PO4 . M 13 CDL A 1 503 401 CDL CDL . N 14 HEM C 1 401 402 HEM HEM . O 14 HEM C 1 402 403 HEM HEM . P 15 LMT C 1 403 405 LMT LMT . Q 16 PG4 C 1 404 407 PG4 PG4 . R 13 CDL C 1 405 408 CDL CDL . S 17 PEE C 1 406 409 PEE PEE . T 18 JGW C 1 407 404 JGW 1U4 . U 19 HEC D 1 501 501 HEC HEC . V 12 PO4 D 1 502 502 PO4 PO4 . W 13 CDL D 1 503 503 CDL CDL . X 20 FES E 1 201 201 FES FES . Y 21 PX4 E 1 202 202 PX4 PX4 . Z 12 PO4 E 1 203 203 PO4 PO4 . AA 17 PEE E 1 204 204 PEE PEE . BA 13 CDL E 1 205 205 CDL CDL . CA 12 PO4 F 1 501 501 PO4 PO4 . DA 13 CDL G 1 101 504 CDL CDL . EA 12 PO4 G 1 102 101 PO4 PO4 . FA 12 PO4 G 1 103 102 PO4 PO4 . GA 12 PO4 G 1 104 103 PO4 PO4 . HA 22 HOH A 1 601 505 HOH HOH . HA 22 HOH A 2 602 509 HOH HOH . HA 22 HOH A 3 603 504 HOH HOH . HA 22 HOH A 4 604 510 HOH HOH . HA 22 HOH A 5 605 508 HOH HOH . HA 22 HOH A 6 606 505 HOH HOH . HA 22 HOH A 7 607 507 HOH HOH . HA 22 HOH A 8 608 211 HOH HOH . HA 22 HOH A 9 609 503 HOH HOH . HA 22 HOH A 10 610 506 HOH HOH . IA 22 HOH B 1 501 503 HOH HOH . IA 22 HOH B 2 502 502 HOH HOH . IA 22 HOH B 3 503 504 HOH HOH . IA 22 HOH B 4 504 505 HOH HOH . IA 22 HOH B 5 505 501 HOH HOH . JA 22 HOH C 1 501 412 HOH HOH . JA 22 HOH C 2 502 413 HOH HOH . JA 22 HOH C 3 503 416 HOH HOH . JA 22 HOH C 4 504 417 HOH HOH . JA 22 HOH C 5 505 411 HOH HOH . JA 22 HOH C 6 506 414 HOH HOH . JA 22 HOH C 7 507 415 HOH HOH . JA 22 HOH C 8 508 410 HOH HOH . KA 22 HOH D 1 601 507 HOH HOH . KA 22 HOH D 2 602 207 HOH HOH . KA 22 HOH D 3 603 506 HOH HOH . LA 22 HOH E 1 301 210 HOH HOH . LA 22 HOH E 2 302 208 HOH HOH . LA 22 HOH E 3 303 206 HOH HOH . LA 22 HOH E 4 304 209 HOH HOH . MA 22 HOH F 1 601 503 HOH HOH . MA 22 HOH F 2 602 502 HOH HOH . MA 22 HOH F 3 603 506 HOH HOH . MA 22 HOH F 4 604 504 HOH HOH . NA 22 HOH G 1 201 104 HOH HOH . OA 22 HOH J 1 101 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . O 14 -68.098 -65.227 38.169 1 96.72 ? CHA HEM 402 C 1 HETATM 2 C CHB HEM . . . O 14 -65.525 -68.469 35.66 1 96.91 ? CHB HEM 402 C 1 HETATM 3 C CHC HEM . . . O 14 -63.605 -70.076 39.816 1 96.93 ? CHC HEM 402 C 1 HETATM 4 C CHD HEM . . . O 14 -66.843 -67.466 42.268 1 96.91 ? CHD HEM 402 C 1 HETATM 5 C C1A HEM . . . O 14 -67.469 -65.897 37.138 1 96.72 ? C1A HEM 402 C 1 HETATM 6 C C2A HEM . . . O 14 -67.526 -65.508 35.775 1 96.86 ? C2A HEM 402 C 1 HETATM 7 C C3A HEM . . . O 14 -66.811 -66.412 35.05 1 96.61 ? C3A HEM 402 C 1 HETATM 8 C C4A HEM . . . O 14 -66.301 -67.363 35.973 1 96.68 ? C4A HEM 402 C 1 HETATM 9 C CMA HEM . . . O 14 -66.601 -66.399 33.549 1 96.74 ? CMA HEM 402 C 1 HETATM 10 C CAA HEM . . . O 14 -68.243 -64.291 35.235 1 97.42 ? CAA HEM 402 C 1 HETATM 11 C CBA HEM . . . O 14 -67.256 -63.135 35.027 1 98.31 ? CBA HEM 402 C 1 HETATM 12 C CGA HEM . . . O 14 -66.746 -62.554 36.316 1 98.3 ? CGA HEM 402 C 1 HETATM 13 O O1A HEM . . . O 14 -65.553 -62.776 36.623 1 98.1 ? O1A HEM 402 C 1 HETATM 14 O O2A HEM . . . O 14 -67.508 -61.863 37.043 1 98.06 ? O2A HEM 402 C 1 HETATM 15 C C1B HEM . . . O 14 -64.75 -69.173 36.602 1 96.59 ? C1B HEM 402 C 1 HETATM 16 C C2B HEM . . . O 14 -63.778 -70.155 36.217 1 96.45 ? C2B HEM 402 C 1 HETATM 17 C C3B HEM . . . O 14 -63.238 -70.621 37.381 1 96.52 ? C3B HEM 402 C 1 HETATM 18 C C4B HEM . . . O 14 -63.917 -69.881 38.475 1 96.55 ? C4B HEM 402 C 1 HETATM 19 C CMB HEM . . . O 14 -63.43 -70.587 34.803 1 96.31 ? CMB HEM 402 C 1 HETATM 20 C CAB HEM . . . O 14 -62.175 -71.626 37.581 1 96.75 ? CAB HEM 402 C 1 HETATM 21 C CBB HEM . . . O 14 -62 -72.671 36.78 1 96.91 ? CBB HEM 402 C 1 HETATM 22 C C1C HEM . . . O 14 -64.264 -69.461 40.871 1 96.92 ? C1C HEM 402 C 1 HETATM 23 C C2C HEM . . . O 14 -63.906 -69.56 42.229 1 97.1 ? C2C HEM 402 C 1 HETATM 24 C C3C HEM . . . O 14 -64.845 -68.807 42.942 1 97.45 ? C3C HEM 402 C 1 HETATM 25 C C4C HEM . . . O 14 -65.754 -68.257 41.979 1 96.93 ? C4C HEM 402 C 1 HETATM 26 C CMC HEM . . . O 14 -62.728 -70.353 42.748 1 96.76 ? CMC HEM 402 C 1 HETATM 27 C CAC HEM . . . O 14 -64.944 -68.574 44.408 1 98.35 ? CAC HEM 402 C 1 HETATM 28 C CBC HEM . . . O 14 -64.353 -69.305 45.354 1 99.13 ? CBC HEM 402 C 1 HETATM 29 C C1D HEM . . . O 14 -67.437 -66.625 41.326 1 96.81 ? C1D HEM 402 C 1 HETATM 30 C C2D HEM . . . O 14 -68.409 -65.578 41.71 1 96.9 ? C2D HEM 402 C 1 HETATM 31 C C3D HEM . . . O 14 -68.757 -64.945 40.572 1 97.12 ? C3D HEM 402 C 1 HETATM 32 C C4D HEM . . . O 14 -67.996 -65.626 39.499 1 96.77 ? C4D HEM 402 C 1 HETATM 33 C CMD HEM . . . O 14 -68.91 -65.266 43.103 1 96.85 ? CMD HEM 402 C 1 HETATM 34 C CAD HEM . . . O 14 -69.734 -63.784 40.44 1 98.07 ? CAD HEM 402 C 1 HETATM 35 C CBD HEM . . . O 14 -69.01 -62.43 40.366 1 99.61 ? CBD HEM 402 C 1 HETATM 36 C CGD HEM . . . O 14 -69.858 -61.167 40.316 1 100.54 ? CGD HEM 402 C 1 HETATM 37 O O1D HEM . . . O 14 -69.434 -60.14 40.894 1 101.05 ? O1D HEM 402 C 1 HETATM 38 O O2D HEM . . . O 14 -70.951 -61.091 39.7 1 101.03 ? O2D HEM 402 C 1 HETATM 39 N NA HEM . . . O 14 -66.71 -67.046 37.252 1 96.56 ? NA HEM 402 C 1 HETATM 40 N NB HEM . . . O 14 -64.808 -69.044 37.942 1 96.34 ? NB HEM 402 C 1 HETATM 41 N NC HEM . . . O 14 -65.362 -68.663 40.735 1 96.6 ? NC HEM 402 C 1 HETATM 42 N ND HEM . . . O 14 -67.225 -66.62 39.999 1 96.58 ? ND HEM 402 C 1 HETATM 43 FE FE HEM . . . O 14 -66.085 -67.754 39.014 1 95.93 ? FE HEM 402 C 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #