data_6ZFS # _model_server_result.job_id XiNx2oV89QzpbsBfDdIstA _model_server_result.datetime_utc '2024-11-18 14:31:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zfs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":403}' # _entry.id 6ZFS # _exptl.entry_id 6ZFS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 15 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZFS _cell.length_a 209.56 _cell.length_b 209.56 _cell.length_c 343.348 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZFS _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 15 _struct_asym.id P _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 H SG CYS 11 H CYS 24 1_555 H SG CYS 55 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 H SG CYS 27 H CYS 40 1_555 H SG CYS 41 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 C NE2 HIS 82 C HIS 83 1_555 N FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc2 C NE2 HIS 96 C HIS 97 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc3 C NE2 HIS 181 C HIS 182 1_555 N FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc4 C NE2 HIS 195 C HIS 196 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc5 D NE2 HIS 40 D HIS 41 1_555 U FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc6 D SD MET 159 D MET 160 1_555 U FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc7 E SG CYS 158 E CYS 158 1_555 X FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 729 n n C1B O1B LMT sing 730 n n C1B O5B LMT sing 731 n n C1B H1B LMT sing 732 n n C2B C3B LMT sing 733 n n C2B O2B LMT sing 734 n n C2B H2B LMT sing 735 n n C3B C4B LMT sing 736 n n C3B O3B LMT sing 737 n n C3B H3B LMT sing 738 n n C4B C5B LMT sing 739 n n C4B O4' LMT sing 740 n n C4B H4B LMT sing 741 n n C5B C6B LMT sing 742 n n C5B O5B LMT sing 743 n n C5B H5B LMT sing 744 n n C6B O6B LMT sing 745 n n C6B "H6'2" LMT sing 746 n n C6B "H6'1" LMT sing 747 n n O1B C4' LMT sing 748 n n O2B H2O1 LMT sing 749 n n O3B H3O1 LMT sing 750 n n O4' H4O1 LMT sing 751 n n O6B H6B LMT sing 752 n n C1' C2' LMT sing 753 n n C1' O1' LMT sing 754 n n C1' O5' LMT sing 755 n n C1' H1' LMT sing 756 n n C2' C3' LMT sing 757 n n C2' O2' LMT sing 758 n n C2' H2' LMT sing 759 n n C3' C4' LMT sing 760 n n C3' O3' LMT sing 761 n n C3' H3' LMT sing 762 n n C4' C5' LMT sing 763 n n C4' H4' LMT sing 764 n n C5' C6' LMT sing 765 n n C5' O5' LMT sing 766 n n C5' H5' LMT sing 767 n n C6' O6' LMT sing 768 n n C6' H6D LMT sing 769 n n C6' H6E LMT sing 770 n n O1' C1 LMT sing 771 n n O2' H2O2 LMT sing 772 n n O3' H3O2 LMT sing 773 n n O6' H6' LMT sing 774 n n C1 C2 LMT sing 775 n n C1 H12 LMT sing 776 n n C1 H11 LMT sing 777 n n C2 C3 LMT sing 778 n n C2 H22 LMT sing 779 n n C2 H21 LMT sing 780 n n C3 C4 LMT sing 781 n n C3 H32 LMT sing 782 n n C3 H31 LMT sing 783 n n C4 C5 LMT sing 784 n n C4 H42 LMT sing 785 n n C4 H41 LMT sing 786 n n C5 C6 LMT sing 787 n n C5 H52 LMT sing 788 n n C5 H51 LMT sing 789 n n C6 C7 LMT sing 790 n n C6 H62 LMT sing 791 n n C6 H61 LMT sing 792 n n C7 C8 LMT sing 793 n n C7 H72 LMT sing 794 n n C7 H71 LMT sing 795 n n C8 C9 LMT sing 796 n n C8 H82 LMT sing 797 n n C8 H81 LMT sing 798 n n C9 C10 LMT sing 799 n n C9 H92 LMT sing 800 n n C9 H91 LMT sing 801 n n C10 C11 LMT sing 802 n n C10 H102 LMT sing 803 n n C10 H101 LMT sing 804 n n C11 C12 LMT sing 805 n n C11 H112 LMT sing 806 n n C11 H111 LMT sing 807 n n C12 H123 LMT sing 808 n n C12 H122 LMT sing 809 n n C12 H121 LMT sing 810 n n # _atom_sites.entry_id 6ZFS _atom_sites.fract_transf_matrix[1][1] 0.004772 _atom_sites.fract_transf_matrix[1][2] 0.002755 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00551 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 11 6PE A 1 501 502 6PE 6PE . L 12 PO4 A 1 502 501 PO4 PO4 . M 13 CDL A 1 503 401 CDL CDL . N 14 HEM C 1 401 402 HEM HEM . O 14 HEM C 1 402 403 HEM HEM . P 15 LMT C 1 403 405 LMT LMT . Q 16 PG4 C 1 404 407 PG4 PG4 . R 13 CDL C 1 405 408 CDL CDL . S 17 PEE C 1 406 409 PEE PEE . T 18 JGW C 1 407 404 JGW 1U4 . U 19 HEC D 1 501 501 HEC HEC . V 12 PO4 D 1 502 502 PO4 PO4 . W 13 CDL D 1 503 503 CDL CDL . X 20 FES E 1 201 201 FES FES . Y 21 PX4 E 1 202 202 PX4 PX4 . Z 12 PO4 E 1 203 203 PO4 PO4 . AA 17 PEE E 1 204 204 PEE PEE . BA 13 CDL E 1 205 205 CDL CDL . CA 12 PO4 F 1 501 501 PO4 PO4 . DA 13 CDL G 1 101 504 CDL CDL . EA 12 PO4 G 1 102 101 PO4 PO4 . FA 12 PO4 G 1 103 102 PO4 PO4 . GA 12 PO4 G 1 104 103 PO4 PO4 . HA 22 HOH A 1 601 505 HOH HOH . HA 22 HOH A 2 602 509 HOH HOH . HA 22 HOH A 3 603 504 HOH HOH . HA 22 HOH A 4 604 510 HOH HOH . HA 22 HOH A 5 605 508 HOH HOH . HA 22 HOH A 6 606 505 HOH HOH . HA 22 HOH A 7 607 507 HOH HOH . HA 22 HOH A 8 608 211 HOH HOH . HA 22 HOH A 9 609 503 HOH HOH . HA 22 HOH A 10 610 506 HOH HOH . IA 22 HOH B 1 501 503 HOH HOH . IA 22 HOH B 2 502 502 HOH HOH . IA 22 HOH B 3 503 504 HOH HOH . IA 22 HOH B 4 504 505 HOH HOH . IA 22 HOH B 5 505 501 HOH HOH . JA 22 HOH C 1 501 412 HOH HOH . JA 22 HOH C 2 502 413 HOH HOH . JA 22 HOH C 3 503 416 HOH HOH . JA 22 HOH C 4 504 417 HOH HOH . JA 22 HOH C 5 505 411 HOH HOH . JA 22 HOH C 6 506 414 HOH HOH . JA 22 HOH C 7 507 415 HOH HOH . JA 22 HOH C 8 508 410 HOH HOH . KA 22 HOH D 1 601 507 HOH HOH . KA 22 HOH D 2 602 207 HOH HOH . KA 22 HOH D 3 603 506 HOH HOH . LA 22 HOH E 1 301 210 HOH HOH . LA 22 HOH E 2 302 208 HOH HOH . LA 22 HOH E 3 303 206 HOH HOH . LA 22 HOH E 4 304 209 HOH HOH . MA 22 HOH F 1 601 503 HOH HOH . MA 22 HOH F 2 602 502 HOH HOH . MA 22 HOH F 3 603 506 HOH HOH . MA 22 HOH F 4 604 504 HOH HOH . NA 22 HOH G 1 201 104 HOH HOH . OA 22 HOH J 1 101 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . P 15 -40.401 -72.465 69.234 1 223.3 ? C1B LMT 403 C 1 HETATM 2 C C2B LMT . . . P 15 -40.005 -73.714 68.427 1 221.34 ? C2B LMT 403 C 1 HETATM 3 C C3B LMT . . . P 15 -40.884 -74.909 68.818 1 218.88 ? C3B LMT 403 C 1 HETATM 4 C C4B LMT . . . P 15 -42.194 -74.521 69.528 1 216.97 ? C4B LMT 403 C 1 HETATM 5 C C5B LMT . . . P 15 -42.78 -73.184 69.036 1 214.09 ? C5B LMT 403 C 1 HETATM 6 C C6B LMT . . . P 15 -43.994 -72.689 69.826 1 208.25 ? C6B LMT 403 C 1 HETATM 7 O O1B LMT . . . P 15 -39.638 -71.304 68.867 1 223.59 ? O1B LMT 403 C 1 HETATM 8 O O2B LMT . . . P 15 -40.128 -73.481 67.015 1 220.01 ? O2B LMT 403 C 1 HETATM 9 O O3B LMT . . . P 15 -40.132 -75.758 69.688 1 220.06 ? O3B LMT 403 C 1 HETATM 10 O O4' LMT . . . P 15 -43.155 -75.565 69.348 1 215.36 ? O4' LMT 403 C 1 HETATM 11 O O5B LMT . . . P 15 -41.794 -72.139 69.052 1 220 ? O5B LMT 403 C 1 HETATM 12 O O6B LMT . . . P 15 -45.017 -73.687 69.876 1 203.01 ? O6B LMT 403 C 1 HETATM 13 C C1' LMT . . . P 15 -38.202 -67.665 70.422 1 219.26 ? C1' LMT 403 C 1 HETATM 14 C C2' LMT . . . P 15 -37.22 -68.846 70.388 1 220.92 ? C2' LMT 403 C 1 HETATM 15 C C3' LMT . . . P 15 -37.762 -70.049 69.602 1 219.47 ? C3' LMT 403 C 1 HETATM 16 C C4' LMT . . . P 15 -39.215 -70.432 69.934 1 222.31 ? C4' LMT 403 C 1 HETATM 17 C C5' LMT . . . P 15 -40.114 -69.171 70.098 1 222.97 ? C5' LMT 403 C 1 HETATM 18 C C6' LMT . . . P 15 -41.467 -69.443 70.765 1 221.13 ? C6' LMT 403 C 1 HETATM 19 O O1' LMT . . . P 15 -37.682 -66.671 71.31 1 214.07 ? O1' LMT 403 C 1 HETATM 20 O O2' LMT . . . P 15 -35.989 -68.426 69.793 1 222.85 ? O2' LMT 403 C 1 HETATM 21 O O3' LMT . . . P 15 -36.9 -71.174 69.813 1 215.97 ? O3' LMT 403 C 1 HETATM 22 O O5' LMT . . . P 15 -39.486 -68.123 70.874 1 223.37 ? O5' LMT 403 C 1 HETATM 23 O O6' LMT . . . P 15 -42.443 -69.766 69.766 1 218.14 ? O6' LMT 403 C 1 HETATM 24 C C1 LMT . . . P 15 -38.132 -65.331 71.092 1 203.69 ? C1 LMT 403 C 1 HETATM 25 C C2 LMT . . . P 15 -38.277 -64.623 72.445 1 199.85 ? C2 LMT 403 C 1 HETATM 26 C C3 LMT . . . P 15 -36.951 -64.461 73.2 1 197.1 ? C3 LMT 403 C 1 HETATM 27 C C4 LMT . . . P 15 -37.127 -64.192 74.697 1 193.61 ? C4 LMT 403 C 1 HETATM 28 C C5 LMT . . . P 15 -35.881 -63.535 75.29 1 192.1 ? C5 LMT 403 C 1 HETATM 29 C C6 LMT . . . P 15 -36.182 -62.197 75.965 1 192.14 ? C6 LMT 403 C 1 HETATM 30 C C7 LMT . . . P 15 -36.096 -61.021 74.984 1 190.79 ? C7 LMT 403 C 1 HETATM 31 C C8 LMT . . . P 15 -35.69 -59.706 75.65 1 190.88 ? C8 LMT 403 C 1 HETATM 32 C C9 LMT . . . P 15 -36.067 -58.5 74.782 1 187.97 ? C9 LMT 403 C 1 HETATM 33 C C10 LMT . . . P 15 -37.169 -57.647 75.413 1 186.52 ? C10 LMT 403 C 1 HETATM 34 C C11 LMT . . . P 15 -38.539 -57.925 74.792 1 182.51 ? C11 LMT 403 C 1 HETATM 35 C C12 LMT . . . P 15 -39.591 -56.963 75.305 1 179.9 ? C12 LMT 403 C 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 211 _model_server_stats.query_time_ms 467 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 35 #