data_6ZFS # _model_server_result.job_id naVNglFy9_b24qSJQER91A _model_server_result.datetime_utc '2024-11-18 14:27:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zfs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":406}' # _entry.id 6ZFS # _exptl.entry_id 6ZFS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 744.034 _entity.id 17 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZFS _cell.length_a 209.56 _cell.length_b 209.56 _cell.length_c 343.348 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZFS _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 17 S N N ? 17 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 H SG CYS 11 H CYS 24 1_555 H SG CYS 55 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 H SG CYS 27 H CYS 40 1_555 H SG CYS 41 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 C NE2 HIS 82 C HIS 83 1_555 N FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc2 C NE2 HIS 96 C HIS 97 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc3 C NE2 HIS 181 C HIS 182 1_555 N FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc4 C NE2 HIS 195 C HIS 196 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc5 D NE2 HIS 40 D HIS 41 1_555 U FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc6 D SD MET 159 D MET 160 1_555 U FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc7 E SG CYS 158 E CYS 158 1_555 X FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C5 PEE sing 854 n n C5 C4 PEE sing 855 n n C4 O4P PEE sing 856 n n O4P P PEE sing 857 n n O1P P PEE doub 858 n n C1 O3P PEE sing 859 n n C1 C2 PEE sing 860 n n O3P P PEE sing 861 n n P O2P PEE sing 862 n n C2 C3 PEE sing 863 n n C2 O2 PEE sing 864 n n C3 O3 PEE sing 865 n n O2 C10 PEE sing 866 n n C31 C30 PEE sing 867 n n C31 C32 PEE sing 868 n n C33 C32 PEE sing 869 n n C33 C34 PEE sing 870 n n C30 O3 PEE sing 871 n n C30 O5 PEE doub 872 n n C10 O4 PEE doub 873 n n C10 C11 PEE sing 874 n n C34 C35 PEE sing 875 n n C11 C12 PEE sing 876 n n C35 C36 PEE sing 877 n n C36 C37 PEE sing 878 n n C37 C38 PEE sing 879 n n C38 C39 PEE doub 880 z n C12 C13 PEE sing 881 n n C39 C40 PEE sing 882 n n C13 C14 PEE sing 883 n n C14 C15 PEE sing 884 n n C40 C41 PEE sing 885 n n C15 C16 PEE sing 886 n n C41 C42 PEE sing 887 n n C16 C17 PEE sing 888 n n C42 C43 PEE sing 889 n n C17 C18 PEE sing 890 n n C43 C44 PEE sing 891 n n C18 C19 PEE doub 892 z n C46 C47 PEE sing 893 n n C46 C45 PEE sing 894 n n C44 C45 PEE sing 895 n n C19 C20 PEE sing 896 n n C20 C21 PEE sing 897 n n C21 C22 PEE sing 898 n n C22 C23 PEE sing 899 n n C23 C24 PEE sing 900 n n C24 C25 PEE sing 901 n n C26 C25 PEE sing 902 n n C26 C27 PEE sing 903 n n C27 H7 PEE sing 904 n n C27 H8 PEE sing 905 n n C27 H82 PEE sing 906 n n C26 H5 PEE sing 907 n n C26 H6 PEE sing 908 n n C25 H12 PEE sing 909 n n C25 H4 PEE sing 910 n n C24 H10 PEE sing 911 n n C24 H11 PEE sing 912 n n C23 H83 PEE sing 913 n n C23 H9 PEE sing 914 n n C22 H2 PEE sing 915 n n C22 H3 PEE sing 916 n n C21 H14 PEE sing 917 n n C21 H1 PEE sing 918 n n C20 H16 PEE sing 919 n n C20 H13 PEE sing 920 n n C19 H18 PEE sing 921 n n C18 H20 PEE sing 922 n n C17 H22 PEE sing 923 n n C17 H19 PEE sing 924 n n C16 H21 PEE sing 925 n n C16 H28 PEE sing 926 n n C15 H23 PEE sing 927 n n C15 H24 PEE sing 928 n n C14 H25 PEE sing 929 n n C14 H26 PEE sing 930 n n C13 H17 PEE sing 931 n n C13 H27 PEE sing 932 n n C12 H15 PEE sing 933 n n C12 H29 PEE sing 934 n n C11 H30 PEE sing 935 n n C11 H31 PEE sing 936 n n C2 H32 PEE sing 937 n n C1 H33 PEE sing 938 n n C1 H34 PEE sing 939 n n O2P H35 PEE sing 940 n n C4 H36 PEE sing 941 n n C4 H37 PEE sing 942 n n C5 H38 PEE sing 943 n n C5 H39 PEE sing 944 n n N H40 PEE sing 945 n n N H41 PEE sing 946 n n C3 H43 PEE sing 947 n n C3 H44 PEE sing 948 n n C31 H45 PEE sing 949 n n C31 H46 PEE sing 950 n n C32 H47 PEE sing 951 n n C32 H48 PEE sing 952 n n C33 H49 PEE sing 953 n n C33 H50 PEE sing 954 n n C34 H51 PEE sing 955 n n C34 H52 PEE sing 956 n n C35 H53 PEE sing 957 n n C35 H54 PEE sing 958 n n C36 H55 PEE sing 959 n n C36 H56 PEE sing 960 n n C37 H57 PEE sing 961 n n C37 H58 PEE sing 962 n n C38 H59 PEE sing 963 n n C39 H60 PEE sing 964 n n C40 H81 PEE sing 965 n n C40 H61 PEE sing 966 n n C41 H80 PEE sing 967 n n C41 H62 PEE sing 968 n n C42 H63 PEE sing 969 n n C42 H64 PEE sing 970 n n C43 H65 PEE sing 971 n n C43 H66 PEE sing 972 n n C44 H67 PEE sing 973 n n C44 H68 PEE sing 974 n n C45 H69 PEE sing 975 n n C45 H70 PEE sing 976 n n C46 H71 PEE sing 977 n n C46 H72 PEE sing 978 n n C47 H73 PEE sing 979 n n C47 H74 PEE sing 980 n n C47 H75 PEE sing 981 n n # _atom_sites.entry_id 6ZFS _atom_sites.fract_transf_matrix[1][1] 0.004772 _atom_sites.fract_transf_matrix[1][2] 0.002755 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00551 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 11 6PE A 1 501 502 6PE 6PE . L 12 PO4 A 1 502 501 PO4 PO4 . M 13 CDL A 1 503 401 CDL CDL . N 14 HEM C 1 401 402 HEM HEM . O 14 HEM C 1 402 403 HEM HEM . P 15 LMT C 1 403 405 LMT LMT . Q 16 PG4 C 1 404 407 PG4 PG4 . R 13 CDL C 1 405 408 CDL CDL . S 17 PEE C 1 406 409 PEE PEE . T 18 JGW C 1 407 404 JGW 1U4 . U 19 HEC D 1 501 501 HEC HEC . V 12 PO4 D 1 502 502 PO4 PO4 . W 13 CDL D 1 503 503 CDL CDL . X 20 FES E 1 201 201 FES FES . Y 21 PX4 E 1 202 202 PX4 PX4 . Z 12 PO4 E 1 203 203 PO4 PO4 . AA 17 PEE E 1 204 204 PEE PEE . BA 13 CDL E 1 205 205 CDL CDL . CA 12 PO4 F 1 501 501 PO4 PO4 . DA 13 CDL G 1 101 504 CDL CDL . EA 12 PO4 G 1 102 101 PO4 PO4 . FA 12 PO4 G 1 103 102 PO4 PO4 . GA 12 PO4 G 1 104 103 PO4 PO4 . HA 22 HOH A 1 601 505 HOH HOH . HA 22 HOH A 2 602 509 HOH HOH . HA 22 HOH A 3 603 504 HOH HOH . HA 22 HOH A 4 604 510 HOH HOH . HA 22 HOH A 5 605 508 HOH HOH . HA 22 HOH A 6 606 505 HOH HOH . HA 22 HOH A 7 607 507 HOH HOH . HA 22 HOH A 8 608 211 HOH HOH . HA 22 HOH A 9 609 503 HOH HOH . HA 22 HOH A 10 610 506 HOH HOH . IA 22 HOH B 1 501 503 HOH HOH . IA 22 HOH B 2 502 502 HOH HOH . IA 22 HOH B 3 503 504 HOH HOH . IA 22 HOH B 4 504 505 HOH HOH . IA 22 HOH B 5 505 501 HOH HOH . JA 22 HOH C 1 501 412 HOH HOH . JA 22 HOH C 2 502 413 HOH HOH . JA 22 HOH C 3 503 416 HOH HOH . JA 22 HOH C 4 504 417 HOH HOH . JA 22 HOH C 5 505 411 HOH HOH . JA 22 HOH C 6 506 414 HOH HOH . JA 22 HOH C 7 507 415 HOH HOH . JA 22 HOH C 8 508 410 HOH HOH . KA 22 HOH D 1 601 507 HOH HOH . KA 22 HOH D 2 602 207 HOH HOH . KA 22 HOH D 3 603 506 HOH HOH . LA 22 HOH E 1 301 210 HOH HOH . LA 22 HOH E 2 302 208 HOH HOH . LA 22 HOH E 3 303 206 HOH HOH . LA 22 HOH E 4 304 209 HOH HOH . MA 22 HOH F 1 601 503 HOH HOH . MA 22 HOH F 2 602 502 HOH HOH . MA 22 HOH F 3 603 506 HOH HOH . MA 22 HOH F 4 604 504 HOH HOH . NA 22 HOH G 1 201 104 HOH HOH . OA 22 HOH J 1 101 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C25 PEE . . . S 17 -58.292 -67.805 49.799 1 103.13 ? C25 PEE 406 C 1 HETATM 2 C C24 PEE . . . S 17 -57.429 -66.829 49.007 1 104.26 ? C24 PEE 406 C 1 HETATM 3 C C23 PEE . . . S 17 -57.857 -65.345 49.006 1 104.57 ? C23 PEE 406 C 1 HETATM 4 C C22 PEE . . . S 17 -56.955 -64.602 48.004 1 104.94 ? C22 PEE 406 C 1 HETATM 5 C C21 PEE . . . S 17 -56.971 -63.074 47.911 1 105.19 ? C21 PEE 406 C 1 HETATM 6 C C20 PEE . . . S 17 -55.948 -62.686 46.834 1 105.75 ? C20 PEE 406 C 1 HETATM 7 C C19 PEE . . . S 17 -55.569 -61.202 46.796 1 106.83 ? C19 PEE 406 C 1 HETATM 8 C C18 PEE . . . S 17 -55.46 -60.596 45.39 1 106.44 ? C18 PEE 406 C 1 HETATM 9 C C17 PEE . . . S 17 -56.808 -60.029 44.922 1 106.3 ? C17 PEE 406 C 1 HETATM 10 C C16 PEE . . . S 17 -57.124 -58.58 45.303 1 106.52 ? C16 PEE 406 C 1 HETATM 11 C C15 PEE . . . S 17 -58.626 -58.455 45.541 1 105.9 ? C15 PEE 406 C 1 HETATM 12 C C14 PEE . . . S 17 -59.266 -57.377 44.69 1 105.97 ? C14 PEE 406 C 1 HETATM 13 C C13 PEE . . . S 17 -59.832 -56.251 45.544 1 107.15 ? C13 PEE 406 C 1 HETATM 14 C C12 PEE . . . S 17 -60.434 -55.15 44.671 1 108.11 ? C12 PEE 406 C 1 HETATM 15 C C11 PEE . . . S 17 -59.476 -53.982 44.489 1 109.57 ? C11 PEE 406 C 1 HETATM 16 C C10 PEE . . . S 17 -59.734 -52.833 45.434 1 111.65 ? C10 PEE 406 C 1 HETATM 17 O O4 PEE . . . S 17 -60.112 -53.023 46.59 1 113.36 ? O4 PEE 406 C 1 HETATM 18 O O2 PEE . . . S 17 -59.499 -51.479 44.945 1 111.72 ? O2 PEE 406 C 1 HETATM 19 C C2 PEE . . . S 17 -59.299 -50.555 46.006 1 112.5 ? C2 PEE 406 C 1 HETATM 20 C C1 PEE . . . S 17 -60.447 -49.567 45.97 1 112.98 ? C1 PEE 406 C 1 HETATM 21 O O3P PEE . . . S 17 -61.595 -50.255 45.482 1 112.96 ? O3P PEE 406 C 1 HETATM 22 P P PEE . . . S 17 -63.083 -49.681 45.641 1 113.35 ? P PEE 406 C 1 HETATM 23 O O2P PEE . . . S 17 -63.3 -49.213 47.065 1 113.82 ? O2P PEE 406 C 1 HETATM 24 O O1P PEE . . . S 17 -63.999 -50.724 45.069 1 112.94 ? O1P PEE 406 C 1 HETATM 25 O O4P PEE . . . S 17 -63.073 -48.461 44.585 1 114.5 ? O4P PEE 406 C 1 HETATM 26 C C4 PEE . . . S 17 -63.455 -47.122 44.899 1 116.15 ? C4 PEE 406 C 1 HETATM 27 C C5 PEE . . . S 17 -63.636 -46.345 43.596 1 117.12 ? C5 PEE 406 C 1 HETATM 28 N N PEE . . . S 17 -62.319 -46.1 42.941 1 117.83 ? N PEE 406 C 1 HETATM 29 C C3 PEE . . . S 17 -57.986 -49.848 45.748 1 113.3 ? C3 PEE 406 C 1 HETATM 30 O O3 PEE . . . S 17 -56.891 -50.734 45.974 1 113.83 ? O3 PEE 406 C 1 HETATM 31 C C30 PEE . . . S 17 -56.249 -51.452 44.875 1 113.86 ? C30 PEE 406 C 1 HETATM 32 O O5 PEE . . . S 17 -56.731 -52.498 44.505 1 114.4 ? O5 PEE 406 C 1 HETATM 33 C C31 PEE . . . S 17 -55.007 -50.957 44.171 1 114.12 ? C31 PEE 406 C 1 HETATM 34 C C32 PEE . . . S 17 -53.837 -51.9 44.447 1 114.16 ? C32 PEE 406 C 1 HETATM 35 C C33 PEE . . . S 17 -53.826 -53.17 43.584 1 112.72 ? C33 PEE 406 C 1 HETATM 36 C C34 PEE . . . S 17 -53.984 -54.433 44.421 1 111.63 ? C34 PEE 406 C 1 HETATM 37 C C35 PEE . . . S 17 -52.983 -55.531 44.044 1 111.74 ? C35 PEE 406 C 1 HETATM 38 C C36 PEE . . . S 17 -52.778 -56.522 45.192 1 111.88 ? C36 PEE 406 C 1 HETATM 39 C C37 PEE . . . S 17 -51.537 -57.404 44.994 1 111.79 ? C37 PEE 406 C 1 HETATM 40 C C38 PEE . . . S 17 -51.609 -58.715 45.775 1 110.84 ? C38 PEE 406 C 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 54 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 786 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 40 #