data_6ZFT # _model_server_result.job_id cgMs_iNcWRUsEuWGrSlbjg _model_server_result.datetime_utc '2024-11-23 22:55:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zft # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":405}' # _entry.id 6ZFT # _exptl.entry_id 6ZFT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 16 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZFT _cell.length_a 212.36 _cell.length_b 212.36 _cell.length_c 345.914 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZFT _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 16 _struct_asym.id R _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 H SG CYS 12 H CYS 24 1_555 H SG CYS 56 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 H SG CYS 28 H CYS 40 1_555 H SG CYS 42 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc1 C NE2 HIS 82 C HIS 83 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc2 C NE2 HIS 96 C HIS 97 1_555 P FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc3 C NE2 HIS 181 C HIS 182 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc4 C NE2 HIS 195 C HIS 196 1_555 P FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc5 D NE2 HIS 40 D HIS 41 1_555 X FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc6 D SD MET 159 D MET 160 1_555 X FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc7 E ND1 HIS 141 E HIS 141 1_555 AA FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc8 E SG CYS 158 E CYS 158 1_555 AA FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 729 n n C1B O1B LMT sing 730 n n C1B O5B LMT sing 731 n n C1B H1B LMT sing 732 n n C2B C3B LMT sing 733 n n C2B O2B LMT sing 734 n n C2B H2B LMT sing 735 n n C3B C4B LMT sing 736 n n C3B O3B LMT sing 737 n n C3B H3B LMT sing 738 n n C4B C5B LMT sing 739 n n C4B O4' LMT sing 740 n n C4B H4B LMT sing 741 n n C5B C6B LMT sing 742 n n C5B O5B LMT sing 743 n n C5B H5B LMT sing 744 n n C6B O6B LMT sing 745 n n C6B "H6'2" LMT sing 746 n n C6B "H6'1" LMT sing 747 n n O1B C4' LMT sing 748 n n O2B H2O1 LMT sing 749 n n O3B H3O1 LMT sing 750 n n O4' H4O1 LMT sing 751 n n O6B H6B LMT sing 752 n n C1' C2' LMT sing 753 n n C1' O1' LMT sing 754 n n C1' O5' LMT sing 755 n n C1' H1' LMT sing 756 n n C2' C3' LMT sing 757 n n C2' O2' LMT sing 758 n n C2' H2' LMT sing 759 n n C3' C4' LMT sing 760 n n C3' O3' LMT sing 761 n n C3' H3' LMT sing 762 n n C4' C5' LMT sing 763 n n C4' H4' LMT sing 764 n n C5' C6' LMT sing 765 n n C5' O5' LMT sing 766 n n C5' H5' LMT sing 767 n n C6' O6' LMT sing 768 n n C6' H6D LMT sing 769 n n C6' H6E LMT sing 770 n n O1' C1 LMT sing 771 n n O2' H2O2 LMT sing 772 n n O3' H3O2 LMT sing 773 n n O6' H6' LMT sing 774 n n C1 C2 LMT sing 775 n n C1 H12 LMT sing 776 n n C1 H11 LMT sing 777 n n C2 C3 LMT sing 778 n n C2 H22 LMT sing 779 n n C2 H21 LMT sing 780 n n C3 C4 LMT sing 781 n n C3 H32 LMT sing 782 n n C3 H31 LMT sing 783 n n C4 C5 LMT sing 784 n n C4 H42 LMT sing 785 n n C4 H41 LMT sing 786 n n C5 C6 LMT sing 787 n n C5 H52 LMT sing 788 n n C5 H51 LMT sing 789 n n C6 C7 LMT sing 790 n n C6 H62 LMT sing 791 n n C6 H61 LMT sing 792 n n C7 C8 LMT sing 793 n n C7 H72 LMT sing 794 n n C7 H71 LMT sing 795 n n C8 C9 LMT sing 796 n n C8 H82 LMT sing 797 n n C8 H81 LMT sing 798 n n C9 C10 LMT sing 799 n n C9 H92 LMT sing 800 n n C9 H91 LMT sing 801 n n C10 C11 LMT sing 802 n n C10 H102 LMT sing 803 n n C10 H101 LMT sing 804 n n C11 C12 LMT sing 805 n n C11 H112 LMT sing 806 n n C11 H111 LMT sing 807 n n C12 H123 LMT sing 808 n n C12 H122 LMT sing 809 n n C12 H121 LMT sing 810 n n # _atom_sites.entry_id 6ZFT _atom_sites.fract_transf_matrix[1][1] 0.004709 _atom_sites.fract_transf_matrix[1][2] 0.002719 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005437 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002891 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 11 PG4 A 1 501 501 PG4 PG4 . L 12 6PE A 1 502 502 6PE 6PE . M 11 PG4 A 1 503 601 PG4 PG4 . N 13 CDL C 1 401 401 CDL CDL . O 14 HEM C 1 402 402 HEM HEM . P 14 HEM C 1 403 403 HEM HEM . Q 15 JHB C 1 404 404 JHB CK2 . R 16 LMT C 1 405 405 LMT LMT . S 11 PG4 C 1 406 406 PG4 PG4 . T 11 PG4 C 1 407 407 PG4 PG4 . U 13 CDL C 1 408 408 CDL CDL . V 17 PEE C 1 409 409 PEE PEE . W 18 PO4 C 1 410 410 PO4 PO4 . X 19 HEC D 1 501 501 HEC HEC . Y 13 CDL D 1 502 503 CDL CDL . Z 17 PEE D 1 503 204 PEE PEE . AA 20 FES E 1 201 201 FES FES . BA 21 PX4 E 1 202 202 PX4 PX4 . CA 13 CDL E 1 203 205 CDL CDL . DA 18 PO4 F 1 501 501 PO4 PO4 . EA 18 PO4 G 1 101 101 PO4 PO4 . FA 18 PO4 G 1 102 102 PO4 PO4 . GA 18 PO4 G 1 103 103 PO4 PO4 . HA 18 PO4 H 1 101 101 PO4 PO4 . IA 22 HOH A 1 601 505 HOH HOH . IA 22 HOH A 2 602 507 HOH HOH . IA 22 HOH A 3 603 506 HOH HOH . JA 22 HOH B 1 501 504 HOH HOH . KA 22 HOH C 1 501 411 HOH HOH . KA 22 HOH C 2 502 412 HOH HOH . KA 22 HOH C 3 503 414 HOH HOH . KA 22 HOH C 4 504 413 HOH HOH . LA 22 HOH D 1 601 504 HOH HOH . LA 22 HOH D 2 602 505 HOH HOH . MA 22 HOH F 1 601 502 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . R 16 -41.266 -74.807 69.94 1 174.37 ? C1B LMT 405 C 1 HETATM 2 C C2B LMT . . . R 16 -41.448 -76.285 69.501 1 174.03 ? C2B LMT 405 C 1 HETATM 3 C C3B LMT . . . R 16 -42.73 -76.51 68.702 1 171.26 ? C3B LMT 405 C 1 HETATM 4 C C4B LMT . . . R 16 -43.905 -76.104 69.583 1 169.73 ? C4B LMT 405 C 1 HETATM 5 C C5B LMT . . . R 16 -43.797 -74.618 69.928 1 169.59 ? C5B LMT 405 C 1 HETATM 6 C C6B LMT . . . R 16 -44.817 -74.214 70.991 1 167.64 ? C6B LMT 405 C 1 HETATM 7 O O1B LMT . . . R 16 -40.683 -73.925 68.946 1 172.58 ? O1B LMT 405 C 1 HETATM 8 O O2B LMT . . . R 16 -40.323 -76.799 68.769 1 175.73 ? O2B LMT 405 C 1 HETATM 9 O O3B LMT . . . R 16 -42.83 -77.885 68.305 1 168.13 ? O3B LMT 405 C 1 HETATM 10 O O4' LMT . . . R 16 -45.146 -76.374 68.925 1 167.08 ? O4' LMT 405 C 1 HETATM 11 O O5B LMT . . . R 16 -42.504 -74.238 70.44 1 173.69 ? O5B LMT 405 C 1 HETATM 12 O O6B LMT . . . R 16 -45.944 -73.606 70.369 1 166.82 ? O6B LMT 405 C 1 HETATM 13 C C1' LMT . . . R 16 -39.121 -69.958 69.754 1 172.68 ? C1' LMT 405 C 1 HETATM 14 C C2' LMT . . . R 16 -38.327 -71.221 70.111 1 169.39 ? C2' LMT 405 C 1 HETATM 15 C C3' LMT . . . R 16 -38.741 -72.433 69.29 1 168.46 ? C3' LMT 405 C 1 HETATM 16 C C4' LMT . . . R 16 -40.236 -72.654 69.473 1 170.99 ? C4' LMT 405 C 1 HETATM 17 C C5' LMT . . . R 16 -40.913 -71.455 68.808 1 173 ? C5' LMT 405 C 1 HETATM 18 C C6' LMT . . . R 16 -42.451 -71.558 68.819 1 173.39 ? C6' LMT 405 C 1 HETATM 19 O O1' LMT . . . R 16 -39.078 -69.061 70.888 1 174.26 ? O1' LMT 405 C 1 HETATM 20 O O2' LMT . . . R 16 -36.933 -70.984 69.915 1 166.5 ? O2' LMT 405 C 1 HETATM 21 O O3' LMT . . . R 16 -38 -73.569 69.725 1 167.11 ? O3' LMT 405 C 1 HETATM 22 O O5' LMT . . . R 16 -40.508 -70.225 69.444 1 174.84 ? O5' LMT 405 C 1 HETATM 23 O O6' LMT . . . R 16 -43.009 -71.74 70.132 1 172.24 ? O6' LMT 405 C 1 HETATM 24 C C1 LMT . . . R 16 -38.688 -67.688 70.707 1 171.49 ? C1 LMT 405 C 1 HETATM 25 C C2 LMT . . . R 16 -37.447 -67.44 71.566 1 170.91 ? C2 LMT 405 C 1 HETATM 26 C C3 LMT . . . R 16 -37.088 -65.967 71.727 1 168.62 ? C3 LMT 405 C 1 HETATM 27 C C4 LMT . . . R 16 -35.94 -65.58 70.8 1 166.73 ? C4 LMT 405 C 1 HETATM 28 C C5 LMT . . . R 16 -35.897 -64.075 70.574 1 166.27 ? C5 LMT 405 C 1 HETATM 29 C C6 LMT . . . R 16 -37.03 -63.574 69.666 1 165.37 ? C6 LMT 405 C 1 HETATM 30 C C7 LMT . . . R 16 -37.865 -62.435 70.287 1 164.16 ? C7 LMT 405 C 1 HETATM 31 C C8 LMT . . . R 16 -37.636 -61.049 69.652 1 161.7 ? C8 LMT 405 C 1 HETATM 32 C C9 LMT . . . R 16 -37.469 -59.908 70.666 1 159.74 ? C9 LMT 405 C 1 HETATM 33 C C10 LMT . . . R 16 -36.186 -59.092 70.455 1 158.43 ? C10 LMT 405 C 1 HETATM 34 C C11 LMT . . . R 16 -35.624 -58.547 71.769 1 157.24 ? C11 LMT 405 C 1 HETATM 35 C C12 LMT . . . R 16 -34.492 -57.565 71.545 1 155.72 ? C12 LMT 405 C 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #