data_6ZFT # _model_server_result.job_id PENGnGo4Nm_Rchd2PcC12A _model_server_result.datetime_utc '2024-11-23 22:43:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zft # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":501}' # _entry.id 6ZFT # _exptl.entry_id 6ZFT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 19 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZFT _cell.length_a 212.36 _cell.length_b 212.36 _cell.length_c 345.914 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZFT _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 19 _struct_asym.id X _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 H SG CYS 12 H CYS 24 1_555 H SG CYS 56 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 H SG CYS 28 H CYS 40 1_555 H SG CYS 42 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc1 C NE2 HIS 82 C HIS 83 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc2 C NE2 HIS 96 C HIS 97 1_555 P FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc3 C NE2 HIS 181 C HIS 182 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc4 C NE2 HIS 195 C HIS 196 1_555 P FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc5 D NE2 HIS 40 D HIS 41 1_555 X FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc6 D SD MET 159 D MET 160 1_555 X FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc7 E ND1 HIS 141 E HIS 141 1_555 AA FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc8 E SG CYS 158 E CYS 158 1_555 AA FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 447 n n FE NB HEC sing 448 n n FE NC HEC sing 449 n n FE ND HEC sing 450 n n CHA C1A HEC doub 451 n n CHA C4D HEC sing 452 n n CHA HHA HEC sing 453 n n CHB C4A HEC doub 454 n n CHB C1B HEC sing 455 n n CHB HHB HEC sing 456 n n CHC C4B HEC doub 457 n n CHC C1C HEC sing 458 n n CHC HHC HEC sing 459 n n CHD C4C HEC doub 460 n n CHD C1D HEC sing 461 n n CHD HHD HEC sing 462 n n NA C1A HEC sing 463 n y NA C4A HEC sing 464 n y C1A C2A HEC sing 465 n y C2A C3A HEC doub 466 n y C2A CAA HEC sing 467 n n C3A C4A HEC sing 468 n y C3A CMA HEC sing 469 n n CMA HMA1 HEC sing 470 n n CMA HMA2 HEC sing 471 n n CMA HMA3 HEC sing 472 n n CAA CBA HEC sing 473 n n CAA HAA1 HEC sing 474 n n CAA HAA2 HEC sing 475 n n CBA CGA HEC sing 476 n n CBA HBA1 HEC sing 477 n n CBA HBA2 HEC sing 478 n n CGA O1A HEC doub 479 n n CGA O2A HEC sing 480 n n O2A H2A HEC sing 481 n n NB C1B HEC sing 482 n y NB C4B HEC sing 483 n y C1B C2B HEC doub 484 n y C2B C3B HEC sing 485 n y C2B CMB HEC sing 486 n n C3B C4B HEC sing 487 n y C3B CAB HEC doub 488 e n CMB HMB1 HEC sing 489 n n CMB HMB2 HEC sing 490 n n CMB HMB3 HEC sing 491 n n CAB CBB HEC sing 492 n n CAB HAB HEC sing 493 n n CBB HBB1 HEC sing 494 n n CBB HBB2 HEC sing 495 n n CBB HBB3 HEC sing 496 n n NC C1C HEC sing 497 n y NC C4C HEC sing 498 n y C1C C2C HEC doub 499 n y C2C C3C HEC sing 500 n y C2C CMC HEC sing 501 n n C3C C4C HEC sing 502 n y C3C CAC HEC doub 503 e n CMC HMC1 HEC sing 504 n n CMC HMC2 HEC sing 505 n n CMC HMC3 HEC sing 506 n n CAC CBC HEC sing 507 n n CAC HAC HEC sing 508 n n CBC HBC1 HEC sing 509 n n CBC HBC2 HEC sing 510 n n CBC HBC3 HEC sing 511 n n ND C1D HEC sing 512 n y ND C4D HEC sing 513 n y C1D C2D HEC doub 514 n y C2D C3D HEC sing 515 n y C2D CMD HEC sing 516 n n C3D C4D HEC doub 517 n y C3D CAD HEC sing 518 n n CMD HMD1 HEC sing 519 n n CMD HMD2 HEC sing 520 n n CMD HMD3 HEC sing 521 n n CAD CBD HEC sing 522 n n CAD HAD1 HEC sing 523 n n CAD HAD2 HEC sing 524 n n CBD CGD HEC sing 525 n n CBD HBD1 HEC sing 526 n n CBD HBD2 HEC sing 527 n n CGD O1D HEC doub 528 n n CGD O2D HEC sing 529 n n O2D H2D HEC sing 530 n n # _atom_sites.entry_id 6ZFT _atom_sites.fract_transf_matrix[1][1] 0.004709 _atom_sites.fract_transf_matrix[1][2] 0.002719 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005437 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002891 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 11 PG4 A 1 501 501 PG4 PG4 . L 12 6PE A 1 502 502 6PE 6PE . M 11 PG4 A 1 503 601 PG4 PG4 . N 13 CDL C 1 401 401 CDL CDL . O 14 HEM C 1 402 402 HEM HEM . P 14 HEM C 1 403 403 HEM HEM . Q 15 JHB C 1 404 404 JHB CK2 . R 16 LMT C 1 405 405 LMT LMT . S 11 PG4 C 1 406 406 PG4 PG4 . T 11 PG4 C 1 407 407 PG4 PG4 . U 13 CDL C 1 408 408 CDL CDL . V 17 PEE C 1 409 409 PEE PEE . W 18 PO4 C 1 410 410 PO4 PO4 . X 19 HEC D 1 501 501 HEC HEC . Y 13 CDL D 1 502 503 CDL CDL . Z 17 PEE D 1 503 204 PEE PEE . AA 20 FES E 1 201 201 FES FES . BA 21 PX4 E 1 202 202 PX4 PX4 . CA 13 CDL E 1 203 205 CDL CDL . DA 18 PO4 F 1 501 501 PO4 PO4 . EA 18 PO4 G 1 101 101 PO4 PO4 . FA 18 PO4 G 1 102 102 PO4 PO4 . GA 18 PO4 G 1 103 103 PO4 PO4 . HA 18 PO4 H 1 101 101 PO4 PO4 . IA 22 HOH A 1 601 505 HOH HOH . IA 22 HOH A 2 602 507 HOH HOH . IA 22 HOH A 3 603 506 HOH HOH . JA 22 HOH B 1 501 504 HOH HOH . KA 22 HOH C 1 501 411 HOH HOH . KA 22 HOH C 2 502 412 HOH HOH . KA 22 HOH C 3 503 414 HOH HOH . KA 22 HOH C 4 504 413 HOH HOH . LA 22 HOH D 1 601 504 HOH HOH . LA 22 HOH D 2 602 505 HOH HOH . MA 22 HOH F 1 601 502 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . X 19 -18.045 -83.53 38.771 1 133.8 ? FE HEC 501 D 1 HETATM 2 C CHA HEC . . . X 19 -20.423 -83.582 41.331 1 132.01 ? CHA HEC 501 D 1 HETATM 3 C CHB HEC . . . X 19 -19.525 -80.741 37.414 1 129.92 ? CHB HEC 501 D 1 HETATM 4 C CHC HEC . . . X 19 -15.467 -83.312 36.458 1 133.25 ? CHC HEC 501 D 1 HETATM 5 C CHD HEC . . . X 19 -16.683 -86.457 40.074 1 134.13 ? CHD HEC 501 D 1 HETATM 6 N NA HEC . . . X 19 -19.693 -82.359 39.285 1 131 ? NA HEC 501 D 1 HETATM 7 C C1A HEC . . . X 19 -20.539 -82.506 40.331 1 131.44 ? C1A HEC 501 D 1 HETATM 8 C C2A HEC . . . X 19 -21.631 -81.491 40.429 1 130.12 ? C2A HEC 501 D 1 HETATM 9 C C3A HEC . . . X 19 -21.366 -80.656 39.246 1 129.55 ? C3A HEC 501 D 1 HETATM 10 C C4A HEC . . . X 19 -20.16 -81.283 38.631 1 130.31 ? C4A HEC 501 D 1 HETATM 11 C CMA HEC . . . X 19 -22.145 -79.45 38.808 1 129.01 ? CMA HEC 501 D 1 HETATM 12 C CAA HEC . . . X 19 -22.766 -81.376 41.438 1 129.09 ? CAA HEC 501 D 1 HETATM 13 C CBA HEC . . . X 19 -22.601 -80.325 42.535 1 128.7 ? CBA HEC 501 D 1 HETATM 14 C CGA HEC . . . X 19 -23.842 -80.353 43.418 1 127.86 ? CGA HEC 501 D 1 HETATM 15 O O1A HEC . . . X 19 -24.179 -81.415 43.982 1 127.85 ? O1A HEC 501 D 1 HETATM 16 O O2A HEC . . . X 19 -24.522 -79.318 43.563 1 126.4 ? O2A HEC 501 D 1 HETATM 17 N NB HEC . . . X 19 -17.569 -82.244 37.188 1 130.77 ? NB HEC 501 D 1 HETATM 18 C C1B HEC . . . X 19 -18.275 -81.184 36.778 1 130.07 ? C1B HEC 501 D 1 HETATM 19 C C2B HEC . . . X 19 -17.717 -80.423 35.643 1 130.24 ? C2B HEC 501 D 1 HETATM 20 C C3B HEC . . . X 19 -16.51 -81.184 35.365 1 130.44 ? C3B HEC 501 D 1 HETATM 21 C C4B HEC . . . X 19 -16.516 -82.28 36.364 1 131.27 ? C4B HEC 501 D 1 HETATM 22 C CMB HEC . . . X 19 -18.302 -79.2 34.992 1 130.97 ? CMB HEC 501 D 1 HETATM 23 C CAB HEC . . . X 19 -15.489 -80.93 34.313 1 131.58 ? CAB HEC 501 D 1 HETATM 24 C CBB HEC . . . X 19 -15.541 -79.777 33.327 1 130.75 ? CBB HEC 501 D 1 HETATM 25 N NC HEC . . . X 19 -16.37 -84.689 38.336 1 133.57 ? NC HEC 501 D 1 HETATM 26 C C1C HEC . . . X 19 -15.438 -84.46 37.391 1 134.34 ? C1C HEC 501 D 1 HETATM 27 C C2C HEC . . . X 19 -14.346 -85.471 37.335 1 135.89 ? C2C HEC 501 D 1 HETATM 28 C C3C HEC . . . X 19 -14.734 -86.398 38.416 1 135.94 ? C3C HEC 501 D 1 HETATM 29 C C4C HEC . . . X 19 -15.985 -85.828 38.945 1 134.58 ? C4C HEC 501 D 1 HETATM 30 C CMC HEC . . . X 19 -13.181 -85.465 36.388 1 136.8 ? CMC HEC 501 D 1 HETATM 31 C CAC HEC . . . X 19 -14.104 -87.643 38.931 1 136.57 ? CAC HEC 501 D 1 HETATM 32 C CBC HEC . . . X 19 -12.827 -88.205 38.373 1 138.43 ? CBC HEC 501 D 1 HETATM 33 N ND HEC . . . X 19 -18.469 -84.783 40.408 1 133.1 ? ND HEC 501 D 1 HETATM 34 C C1D HEC . . . X 19 -17.84 -85.913 40.78 1 133.63 ? C1D HEC 501 D 1 HETATM 35 C C2D HEC . . . X 19 -18.369 -86.588 41.987 1 134.01 ? C2D HEC 501 D 1 HETATM 36 C C3D HEC . . . X 19 -19.495 -85.737 42.366 1 134 ? C3D HEC 501 D 1 HETATM 37 C C4D HEC . . . X 19 -19.442 -84.669 41.333 1 133 ? C4D HEC 501 D 1 HETATM 38 C CMD HEC . . . X 19 -17.893 -87.848 42.65 1 134.92 ? CMD HEC 501 D 1 HETATM 39 C CAD HEC . . . X 19 -20.436 -85.9 43.534 1 134.21 ? CAD HEC 501 D 1 HETATM 40 C CBD HEC . . . X 19 -19.903 -84.978 44.627 1 135.01 ? CBD HEC 501 D 1 HETATM 41 C CGD HEC . . . X 19 -20.8 -84.945 45.841 1 135.1 ? CGD HEC 501 D 1 HETATM 42 O O1D HEC . . . X 19 -20.253 -84.75 46.948 1 135.34 ? O1D HEC 501 D 1 HETATM 43 O O2D HEC . . . X 19 -22.035 -85.095 45.7 1 133.61 ? O2D HEC 501 D 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 43 #