data_6ZFT # _model_server_result.job_id huS5UrDMEgiAfPCNA_AOhQ _model_server_result.datetime_utc '2024-11-23 22:40:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zft # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":502}' # _entry.id 6ZFT # _exptl.entry_id 6ZFT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 410.42 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZFT _cell.length_a 212.36 _cell.length_b 212.36 _cell.length_c 345.914 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZFT _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 12 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 H SG CYS 12 H CYS 24 1_555 H SG CYS 56 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 H SG CYS 28 H CYS 40 1_555 H SG CYS 42 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc1 C NE2 HIS 82 C HIS 83 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc2 C NE2 HIS 96 C HIS 97 1_555 P FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc3 C NE2 HIS 181 C HIS 182 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc4 C NE2 HIS 195 C HIS 196 1_555 P FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc5 D NE2 HIS 40 D HIS 41 1_555 X FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc6 D SD MET 159 D MET 160 1_555 X FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc7 E ND1 HIS 141 E HIS 141 1_555 AA FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc8 E SG CYS 158 E CYS 158 1_555 AA FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? # _chem_comp.formula 'C17 H33 N O8 P -1' _chem_comp.formula_weight 410.42 _chem_comp.id 6PE _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 6PE sing 1 n n O2 P1 6PE doub 2 n n P1 O3 6PE sing 3 n n P1 O8 6PE sing 4 n n O3 C1 6PE sing 5 n n C1 C2 6PE sing 6 n n C1 H1 6PE sing 7 n n C1 H2 6PE sing 8 n n C2 C3 6PE sing 9 n n C2 O6 6PE sing 10 n n C2 H3 6PE sing 11 n n C3 O4 6PE sing 12 n n C3 H4 6PE sing 13 n n C3 H5 6PE sing 14 n n O4 C4 6PE sing 15 n n C4 O5 6PE doub 16 n n C4 C5 6PE sing 17 n n C5 C6 6PE sing 18 n n C5 H6 6PE sing 19 n n C5 H7 6PE sing 20 n n C6 C7 6PE sing 21 n n C6 H8 6PE sing 22 n n C6 H9 6PE sing 23 n n C7 C8 6PE sing 24 n n C7 H10 6PE sing 25 n n C7 H11 6PE sing 26 n n C8 C9 6PE sing 27 n n C8 H12 6PE sing 28 n n C8 H13 6PE sing 29 n n C9 H14 6PE sing 30 n n C9 H15 6PE sing 31 n n C9 H16 6PE sing 32 n n O6 C10 6PE sing 33 n n C10 O7 6PE doub 34 n n C10 C11 6PE sing 35 n n C11 C12 6PE sing 36 n n C11 H17 6PE sing 37 n n C11 H18 6PE sing 38 n n C12 C13 6PE sing 39 n n C12 H19 6PE sing 40 n n C12 H20 6PE sing 41 n n C13 C14 6PE sing 42 n n C13 H21 6PE sing 43 n n C13 H22 6PE sing 44 n n C14 C15 6PE sing 45 n n C14 H23 6PE sing 46 n n C14 H24 6PE sing 47 n n C15 H25 6PE sing 48 n n C15 H26 6PE sing 49 n n C15 H27 6PE sing 50 n n O8 C16 6PE sing 51 n n C16 C17 6PE sing 52 n n C16 H28 6PE sing 53 n n C16 H29 6PE sing 54 n n C17 N1 6PE sing 55 n n C17 H30 6PE sing 56 n n C17 H31 6PE sing 57 n n N1 H32 6PE sing 58 n n N1 H33 6PE sing 59 n n # _atom_sites.entry_id 6ZFT _atom_sites.fract_transf_matrix[1][1] 0.004709 _atom_sites.fract_transf_matrix[1][2] 0.002719 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005437 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002891 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 11 PG4 A 1 501 501 PG4 PG4 . L 12 6PE A 1 502 502 6PE 6PE . M 11 PG4 A 1 503 601 PG4 PG4 . N 13 CDL C 1 401 401 CDL CDL . O 14 HEM C 1 402 402 HEM HEM . P 14 HEM C 1 403 403 HEM HEM . Q 15 JHB C 1 404 404 JHB CK2 . R 16 LMT C 1 405 405 LMT LMT . S 11 PG4 C 1 406 406 PG4 PG4 . T 11 PG4 C 1 407 407 PG4 PG4 . U 13 CDL C 1 408 408 CDL CDL . V 17 PEE C 1 409 409 PEE PEE . W 18 PO4 C 1 410 410 PO4 PO4 . X 19 HEC D 1 501 501 HEC HEC . Y 13 CDL D 1 502 503 CDL CDL . Z 17 PEE D 1 503 204 PEE PEE . AA 20 FES E 1 201 201 FES FES . BA 21 PX4 E 1 202 202 PX4 PX4 . CA 13 CDL E 1 203 205 CDL CDL . DA 18 PO4 F 1 501 501 PO4 PO4 . EA 18 PO4 G 1 101 101 PO4 PO4 . FA 18 PO4 G 1 102 102 PO4 PO4 . GA 18 PO4 G 1 103 103 PO4 PO4 . HA 18 PO4 H 1 101 101 PO4 PO4 . IA 22 HOH A 1 601 505 HOH HOH . IA 22 HOH A 2 602 507 HOH HOH . IA 22 HOH A 3 603 506 HOH HOH . JA 22 HOH B 1 501 504 HOH HOH . KA 22 HOH C 1 501 411 HOH HOH . KA 22 HOH C 2 502 412 HOH HOH . KA 22 HOH C 3 503 414 HOH HOH . KA 22 HOH C 4 504 413 HOH HOH . LA 22 HOH D 1 601 504 HOH HOH . LA 22 HOH D 2 602 505 HOH HOH . MA 22 HOH F 1 601 502 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 6PE . . . L 12 -72.307 -57.009 16.401 1 112.04 ? O1 6PE 502 A 1 HETATM 2 O O2 6PE . . . L 12 -70.664 -55.299 15.331 1 113.76 ? O2 6PE 502 A 1 HETATM 3 P P1 6PE . . . L 12 -71.58 -56.488 15.193 1 114.66 ? P1 6PE 502 A 1 HETATM 4 O O3 6PE . . . L 12 -70.808 -57.763 14.588 1 118.15 ? O3 6PE 502 A 1 HETATM 5 C C1 6PE . . . L 12 -69.363 -57.878 14.755 1 122.59 ? C1 6PE 502 A 1 HETATM 6 C C2 6PE . . . L 12 -69.039 -58.428 16.129 1 124.85 ? C2 6PE 502 A 1 HETATM 7 C C3 6PE . . . L 12 -69.381 -59.895 16.294 1 125.82 ? C3 6PE 502 A 1 HETATM 8 O O4 6PE . . . L 12 -69.253 -60.573 15.025 1 127.47 ? O4 6PE 502 A 1 HETATM 9 C C4 6PE . . . L 12 -68.076 -61.144 14.769 1 131.58 ? C4 6PE 502 A 1 HETATM 10 O O5 6PE . . . L 12 -67.04 -60.806 15.291 1 132.01 ? O5 6PE 502 A 1 HETATM 11 C C5 6PE . . . L 12 -68.213 -62.259 13.762 1 132.8 ? C5 6PE 502 A 1 HETATM 12 C C6 6PE . . . L 12 -67.595 -61.954 12.429 1 132.96 ? C6 6PE 502 A 1 HETATM 13 C C7 6PE . . . L 12 -67.975 -62.964 11.358 1 132.88 ? C7 6PE 502 A 1 HETATM 14 O O6 6PE . . . L 12 -67.623 -58.193 16.405 1 126.43 ? O6 6PE 502 A 1 HETATM 15 C C10 6PE . . . L 12 -67.297 -57.385 17.439 1 125.67 ? C10 6PE 502 A 1 HETATM 16 O O7 6PE . . . L 12 -67.302 -57.811 18.569 1 127.64 ? O7 6PE 502 A 1 HETATM 17 C C11 6PE . . . L 12 -66.929 -55.957 17.06 1 123.06 ? C11 6PE 502 A 1 HETATM 18 C C12 6PE . . . L 12 -67.114 -54.957 18.169 1 121 ? C12 6PE 502 A 1 HETATM 19 C C13 6PE . . . L 12 -65.913 -54.05 18.354 1 120.14 ? C13 6PE 502 A 1 HETATM 20 O O8 6PE . . . L 12 -72.647 -56.135 14.042 1 113.26 ? O8 6PE 502 A 1 HETATM 21 C C16 6PE . . . L 12 -73.485 -57.189 13.473 1 111.83 ? C16 6PE 502 A 1 HETATM 22 C C17 6PE . . . L 12 -74.813 -56.621 13.015 1 110.45 ? C17 6PE 502 A 1 HETATM 23 N N1 6PE . . . L 12 -74.882 -56.35 11.573 1 109.56 ? N1 6PE 502 A 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #