data_6ZFT
#
_model_server_result.job_id            oFC8ZY1mD2BRPATwXYAROw 
_model_server_result.datetime_utc      '2024-11-05 06:42:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zft 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":503}' 
#
_entry.id    6ZFT 
#
_exptl.entry_id    6ZFT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              744.034 
_entity.id                          17 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6ZFT 
_cell.length_a            212.36 
_cell.length_b            212.36 
_cell.length_c            345.914 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZFT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    decameric 
_pdbx_struct_assembly.oligomeric_count      10 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 17 V N N 
? 17 Z N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf2 H SG CYS 12 H CYS 24 1_555 H SG CYS 56 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf3 H SG CYS 28 H CYS 40 1_555 H SG CYS 42 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
metalc ? metalc1 C NE2 HIS 82 C HIS 83 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc2 C NE2 HIS 96 C HIS 97 1_555 P FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc3 C NE2 HIS 181 C HIS 182 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc4 C NE2 HIS 195 C HIS 196 1_555 P FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc5 D NE2 HIS 40 D HIS 41 1_555 X FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc6 D SD MET 159 D MET 160 1_555 X FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc7 E ND1 HIS 141 E HIS 141 1_555 AA FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? 
metalc ? metalc8 E SG CYS 158 E CYS 158 1_555 AA FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
#
_chem_comp.formula           'C41 H78 N O8 P' 
_chem_comp.formula_weight    744.034 
_chem_comp.id                PEE 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DOPE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C5 PEE sing 854 n n 
C5 C4 PEE sing 855 n n 
C4 O4P PEE sing 856 n n 
O4P P PEE sing 857 n n 
O1P P PEE doub 858 n n 
C1 O3P PEE sing 859 n n 
C1 C2 PEE sing 860 n n 
O3P P PEE sing 861 n n 
P O2P PEE sing 862 n n 
C2 C3 PEE sing 863 n n 
C2 O2 PEE sing 864 n n 
C3 O3 PEE sing 865 n n 
O2 C10 PEE sing 866 n n 
C31 C30 PEE sing 867 n n 
C31 C32 PEE sing 868 n n 
C33 C32 PEE sing 869 n n 
C33 C34 PEE sing 870 n n 
C30 O3 PEE sing 871 n n 
C30 O5 PEE doub 872 n n 
C10 O4 PEE doub 873 n n 
C10 C11 PEE sing 874 n n 
C34 C35 PEE sing 875 n n 
C11 C12 PEE sing 876 n n 
C35 C36 PEE sing 877 n n 
C36 C37 PEE sing 878 n n 
C37 C38 PEE sing 879 n n 
C38 C39 PEE doub 880 z n 
C12 C13 PEE sing 881 n n 
C39 C40 PEE sing 882 n n 
C13 C14 PEE sing 883 n n 
C14 C15 PEE sing 884 n n 
C40 C41 PEE sing 885 n n 
C15 C16 PEE sing 886 n n 
C41 C42 PEE sing 887 n n 
C16 C17 PEE sing 888 n n 
C42 C43 PEE sing 889 n n 
C17 C18 PEE sing 890 n n 
C43 C44 PEE sing 891 n n 
C18 C19 PEE doub 892 z n 
C46 C47 PEE sing 893 n n 
C46 C45 PEE sing 894 n n 
C44 C45 PEE sing 895 n n 
C19 C20 PEE sing 896 n n 
C20 C21 PEE sing 897 n n 
C21 C22 PEE sing 898 n n 
C22 C23 PEE sing 899 n n 
C23 C24 PEE sing 900 n n 
C24 C25 PEE sing 901 n n 
C26 C25 PEE sing 902 n n 
C26 C27 PEE sing 903 n n 
C27 H7 PEE sing 904 n n 
C27 H8 PEE sing 905 n n 
C27 H82 PEE sing 906 n n 
C26 H5 PEE sing 907 n n 
C26 H6 PEE sing 908 n n 
C25 H12 PEE sing 909 n n 
C25 H4 PEE sing 910 n n 
C24 H10 PEE sing 911 n n 
C24 H11 PEE sing 912 n n 
C23 H83 PEE sing 913 n n 
C23 H9 PEE sing 914 n n 
C22 H2 PEE sing 915 n n 
C22 H3 PEE sing 916 n n 
C21 H14 PEE sing 917 n n 
C21 H1 PEE sing 918 n n 
C20 H16 PEE sing 919 n n 
C20 H13 PEE sing 920 n n 
C19 H18 PEE sing 921 n n 
C18 H20 PEE sing 922 n n 
C17 H22 PEE sing 923 n n 
C17 H19 PEE sing 924 n n 
C16 H21 PEE sing 925 n n 
C16 H28 PEE sing 926 n n 
C15 H23 PEE sing 927 n n 
C15 H24 PEE sing 928 n n 
C14 H25 PEE sing 929 n n 
C14 H26 PEE sing 930 n n 
C13 H17 PEE sing 931 n n 
C13 H27 PEE sing 932 n n 
C12 H15 PEE sing 933 n n 
C12 H29 PEE sing 934 n n 
C11 H30 PEE sing 935 n n 
C11 H31 PEE sing 936 n n 
C2 H32 PEE sing 937 n n 
C1 H33 PEE sing 938 n n 
C1 H34 PEE sing 939 n n 
O2P H35 PEE sing 940 n n 
C4 H36 PEE sing 941 n n 
C4 H37 PEE sing 942 n n 
C5 H38 PEE sing 943 n n 
C5 H39 PEE sing 944 n n 
N H40 PEE sing 945 n n 
N H41 PEE sing 946 n n 
C3 H43 PEE sing 947 n n 
C3 H44 PEE sing 948 n n 
C31 H45 PEE sing 949 n n 
C31 H46 PEE sing 950 n n 
C32 H47 PEE sing 951 n n 
C32 H48 PEE sing 952 n n 
C33 H49 PEE sing 953 n n 
C33 H50 PEE sing 954 n n 
C34 H51 PEE sing 955 n n 
C34 H52 PEE sing 956 n n 
C35 H53 PEE sing 957 n n 
C35 H54 PEE sing 958 n n 
C36 H55 PEE sing 959 n n 
C36 H56 PEE sing 960 n n 
C37 H57 PEE sing 961 n n 
C37 H58 PEE sing 962 n n 
C38 H59 PEE sing 963 n n 
C39 H60 PEE sing 964 n n 
C40 H81 PEE sing 965 n n 
C40 H61 PEE sing 966 n n 
C41 H80 PEE sing 967 n n 
C41 H62 PEE sing 968 n n 
C42 H63 PEE sing 969 n n 
C42 H64 PEE sing 970 n n 
C43 H65 PEE sing 971 n n 
C43 H66 PEE sing 972 n n 
C44 H67 PEE sing 973 n n 
C44 H68 PEE sing 974 n n 
C45 H69 PEE sing 975 n n 
C45 H70 PEE sing 976 n n 
C46 H71 PEE sing 977 n n 
C46 H72 PEE sing 978 n n 
C47 H73 PEE sing 979 n n 
C47 H74 PEE sing 980 n n 
C47 H75 PEE sing 981 n n 
#
_atom_sites.entry_id                     6ZFT 
_atom_sites.fract_transf_matrix[1][1]    0.004709 
_atom_sites.fract_transf_matrix[1][2]    0.002719 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005437 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002891 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 11 PG4 A 1 501 501 PG4 PG4 . 
L 12 6PE A 1 502 502 6PE 6PE . 
M 11 PG4 A 1 503 601 PG4 PG4 . 
N 13 CDL C 1 401 401 CDL CDL . 
O 14 HEM C 1 402 402 HEM HEM . 
P 14 HEM C 1 403 403 HEM HEM . 
Q 15 JHB C 1 404 404 JHB CK2 . 
R 16 LMT C 1 405 405 LMT LMT . 
S 11 PG4 C 1 406 406 PG4 PG4 . 
T 11 PG4 C 1 407 407 PG4 PG4 . 
U 13 CDL C 1 408 408 CDL CDL . 
V 17 PEE C 1 409 409 PEE PEE . 
W 18 PO4 C 1 410 410 PO4 PO4 . 
X 19 HEC D 1 501 501 HEC HEC . 
Y 13 CDL D 1 502 503 CDL CDL . 
Z 17 PEE D 1 503 204 PEE PEE . 
AA 20 FES E 1 201 201 FES FES . 
BA 21 PX4 E 1 202 202 PX4 PX4 . 
CA 13 CDL E 1 203 205 CDL CDL . 
DA 18 PO4 F 1 501 501 PO4 PO4 . 
EA 18 PO4 G 1 101 101 PO4 PO4 . 
FA 18 PO4 G 1 102 102 PO4 PO4 . 
GA 18 PO4 G 1 103 103 PO4 PO4 . 
HA 18 PO4 H 1 101 101 PO4 PO4 . 
IA 22 HOH A 1 601 505 HOH HOH . 
IA 22 HOH A 2 602 507 HOH HOH . 
IA 22 HOH A 3 603 506 HOH HOH . 
JA 22 HOH B 1 501 504 HOH HOH . 
KA 22 HOH C 1 501 411 HOH HOH . 
KA 22 HOH C 2 502 412 HOH HOH . 
KA 22 HOH C 3 503 414 HOH HOH . 
KA 22 HOH C 4 504 413 HOH HOH . 
LA 22 HOH D 1 601 504 HOH HOH . 
LA 22 HOH D 2 602 505 HOH HOH . 
MA 22 HOH F 1 601 502 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C23 PEE . . . Z 17 -55.823 -69.6 19.198 1 89.91 ? C23 PEE 503 D 1 
HETATM 2 C C22 PEE . . . Z 17 -55.233 -68.283 18.694 1 90.35 ? C22 PEE 503 D 1 
HETATM 3 C C21 PEE . . . Z 17 -55.395 -67.063 19.63 1 90.98 ? C21 PEE 503 D 1 
HETATM 4 C C20 PEE . . . Z 17 -54.763 -65.733 19.147 1 91.2 ? C20 PEE 503 D 1 
HETATM 5 C C19 PEE . . . Z 17 -54.179 -64.842 20.258 1 92.27 ? C19 PEE 503 D 1 
HETATM 6 C C18 PEE . . . Z 17 -53.821 -63.406 19.85 1 93.14 ? C18 PEE 503 D 1 
HETATM 7 C C17 PEE . . . Z 17 -52.783 -62.689 20.734 1 94.62 ? C17 PEE 503 D 1 
HETATM 8 C C16 PEE . . . Z 17 -51.326 -63.147 20.525 1 95.86 ? C16 PEE 503 D 1 
HETATM 9 C C15 PEE . . . Z 17 -50.264 -62.041 20.461 1 96.83 ? C15 PEE 503 D 1 
HETATM 10 C C14 PEE . . . Z 17 -49.146 -62.273 19.446 1 97.5 ? C14 PEE 503 D 1 
HETATM 11 C C13 PEE . . . Z 17 -47.875 -62.914 19.985 1 98.63 ? C13 PEE 503 D 1 
HETATM 12 C C12 PEE . . . Z 17 -46.708 -62.96 18.992 1 99.51 ? C12 PEE 503 D 1 
HETATM 13 C C11 PEE . . . Z 17 -46.901 -63.969 17.893 1 100.03 ? C11 PEE 503 D 1 
HETATM 14 C C10 PEE . . . Z 17 -45.62 -64.436 17.237 1 102.07 ? C10 PEE 503 D 1 
HETATM 15 O O4 PEE . . . Z 17 -45.468 -64.4 16.047 1 102.41 ? O4 PEE 503 D 1 
HETATM 16 O O2 PEE . . . Z 17 -44.657 -64.89 18.072 1 105.26 ? O2 PEE 503 D 1 
HETATM 17 C C2 PEE . . . Z 17 -43.881 -66.105 17.768 1 106.72 ? C2 PEE 503 D 1 
HETATM 18 C C1 PEE . . . Z 17 -42.949 -65.901 16.584 1 107.36 ? C1 PEE 503 D 1 
HETATM 19 O O3P PEE . . . Z 17 -42.654 -67.136 15.843 1 107.98 ? O3P PEE 503 D 1 
HETATM 20 P P PEE . . . Z 17 -41.209 -67.332 15.147 1 108.6 ? P PEE 503 D 1 
HETATM 21 O O2P PEE . . . Z 17 -40.377 -68.174 16.073 1 109.39 ? O2P PEE 503 D 1 
HETATM 22 O O1P PEE . . . Z 17 -40.692 -66.01 14.656 1 108.87 ? O1P PEE 503 D 1 
HETATM 23 O O4P PEE . . . Z 17 -41.402 -68.273 13.857 1 108.74 ? O4P PEE 503 D 1 
HETATM 24 C C4 PEE . . . Z 17 -42.481 -68.022 12.919 1 109.24 ? C4 PEE 503 D 1 
HETATM 25 C C5 PEE . . . Z 17 -42.028 -67.094 11.823 1 110.02 ? C5 PEE 503 D 1 
HETATM 26 N N PEE . . . Z 17 -43.18 -66.404 11.188 1 110.65 ? N PEE 503 D 1 
HETATM 27 C C3 PEE . . . Z 17 -44.801 -67.294 17.599 1 106.9 ? C3 PEE 503 D 1 
HETATM 28 O O3 PEE . . . Z 17 -45.932 -67.17 18.495 1 108.34 ? O3 PEE 503 D 1 
HETATM 29 C C30 PEE . . . Z 17 -45.753 -67.451 19.786 1 109.58 ? C30 PEE 503 D 1 
HETATM 30 O O5 PEE . . . Z 17 -45.134 -68.398 20.191 1 110.44 ? O5 PEE 503 D 1 
HETATM 31 C C31 PEE . . . Z 17 -46.444 -66.448 20.665 1 110.38 ? C31 PEE 503 D 1 
HETATM 32 C C32 PEE . . . Z 17 -47.438 -67.049 21.618 1 110.4 ? C32 PEE 503 D 1 
HETATM 33 C C33 PEE . . . Z 17 -48.892 -66.818 21.219 1 110.01 ? C33 PEE 503 D 1 
HETATM 34 C C34 PEE . . . Z 17 -49.839 -67.82 21.843 1 110.46 ? C34 PEE 503 D 1 
HETATM 35 C C35 PEE . . . Z 17 -51.264 -67.344 22.068 1 110.31 ? C35 PEE 503 D 1 
HETATM 36 C C36 PEE . . . Z 17 -52.091 -68.257 22.976 1 110.46 ? C36 PEE 503 D 1 
HETATM 37 C C37 PEE . . . Z 17 -53.245 -68.982 22.302 1 109.43 ? C37 PEE 503 D 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           339 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           37 
#