data_6ZFT # _model_server_result.job_id iOkI-Gn2KvZJIBN893pl0A _model_server_result.datetime_utc '2024-11-23 23:01:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zft # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":503}' # _entry.id 6ZFT # _exptl.entry_id 6ZFT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 744.034 _entity.id 17 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZFT _cell.length_a 212.36 _cell.length_b 212.36 _cell.length_c 345.914 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZFT _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 17 V N N ? 17 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 H SG CYS 12 H CYS 24 1_555 H SG CYS 56 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 H SG CYS 28 H CYS 40 1_555 H SG CYS 42 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc1 C NE2 HIS 82 C HIS 83 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc2 C NE2 HIS 96 C HIS 97 1_555 P FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc3 C NE2 HIS 181 C HIS 182 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc4 C NE2 HIS 195 C HIS 196 1_555 P FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc5 D NE2 HIS 40 D HIS 41 1_555 X FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc6 D SD MET 159 D MET 160 1_555 X FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc7 E ND1 HIS 141 E HIS 141 1_555 AA FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc8 E SG CYS 158 E CYS 158 1_555 AA FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C5 PEE sing 854 n n C5 C4 PEE sing 855 n n C4 O4P PEE sing 856 n n O4P P PEE sing 857 n n O1P P PEE doub 858 n n C1 O3P PEE sing 859 n n C1 C2 PEE sing 860 n n O3P P PEE sing 861 n n P O2P PEE sing 862 n n C2 C3 PEE sing 863 n n C2 O2 PEE sing 864 n n C3 O3 PEE sing 865 n n O2 C10 PEE sing 866 n n C31 C30 PEE sing 867 n n C31 C32 PEE sing 868 n n C33 C32 PEE sing 869 n n C33 C34 PEE sing 870 n n C30 O3 PEE sing 871 n n C30 O5 PEE doub 872 n n C10 O4 PEE doub 873 n n C10 C11 PEE sing 874 n n C34 C35 PEE sing 875 n n C11 C12 PEE sing 876 n n C35 C36 PEE sing 877 n n C36 C37 PEE sing 878 n n C37 C38 PEE sing 879 n n C38 C39 PEE doub 880 z n C12 C13 PEE sing 881 n n C39 C40 PEE sing 882 n n C13 C14 PEE sing 883 n n C14 C15 PEE sing 884 n n C40 C41 PEE sing 885 n n C15 C16 PEE sing 886 n n C41 C42 PEE sing 887 n n C16 C17 PEE sing 888 n n C42 C43 PEE sing 889 n n C17 C18 PEE sing 890 n n C43 C44 PEE sing 891 n n C18 C19 PEE doub 892 z n C46 C47 PEE sing 893 n n C46 C45 PEE sing 894 n n C44 C45 PEE sing 895 n n C19 C20 PEE sing 896 n n C20 C21 PEE sing 897 n n C21 C22 PEE sing 898 n n C22 C23 PEE sing 899 n n C23 C24 PEE sing 900 n n C24 C25 PEE sing 901 n n C26 C25 PEE sing 902 n n C26 C27 PEE sing 903 n n C27 H7 PEE sing 904 n n C27 H8 PEE sing 905 n n C27 H82 PEE sing 906 n n C26 H5 PEE sing 907 n n C26 H6 PEE sing 908 n n C25 H12 PEE sing 909 n n C25 H4 PEE sing 910 n n C24 H10 PEE sing 911 n n C24 H11 PEE sing 912 n n C23 H83 PEE sing 913 n n C23 H9 PEE sing 914 n n C22 H2 PEE sing 915 n n C22 H3 PEE sing 916 n n C21 H14 PEE sing 917 n n C21 H1 PEE sing 918 n n C20 H16 PEE sing 919 n n C20 H13 PEE sing 920 n n C19 H18 PEE sing 921 n n C18 H20 PEE sing 922 n n C17 H22 PEE sing 923 n n C17 H19 PEE sing 924 n n C16 H21 PEE sing 925 n n C16 H28 PEE sing 926 n n C15 H23 PEE sing 927 n n C15 H24 PEE sing 928 n n C14 H25 PEE sing 929 n n C14 H26 PEE sing 930 n n C13 H17 PEE sing 931 n n C13 H27 PEE sing 932 n n C12 H15 PEE sing 933 n n C12 H29 PEE sing 934 n n C11 H30 PEE sing 935 n n C11 H31 PEE sing 936 n n C2 H32 PEE sing 937 n n C1 H33 PEE sing 938 n n C1 H34 PEE sing 939 n n O2P H35 PEE sing 940 n n C4 H36 PEE sing 941 n n C4 H37 PEE sing 942 n n C5 H38 PEE sing 943 n n C5 H39 PEE sing 944 n n N H40 PEE sing 945 n n N H41 PEE sing 946 n n C3 H43 PEE sing 947 n n C3 H44 PEE sing 948 n n C31 H45 PEE sing 949 n n C31 H46 PEE sing 950 n n C32 H47 PEE sing 951 n n C32 H48 PEE sing 952 n n C33 H49 PEE sing 953 n n C33 H50 PEE sing 954 n n C34 H51 PEE sing 955 n n C34 H52 PEE sing 956 n n C35 H53 PEE sing 957 n n C35 H54 PEE sing 958 n n C36 H55 PEE sing 959 n n C36 H56 PEE sing 960 n n C37 H57 PEE sing 961 n n C37 H58 PEE sing 962 n n C38 H59 PEE sing 963 n n C39 H60 PEE sing 964 n n C40 H81 PEE sing 965 n n C40 H61 PEE sing 966 n n C41 H80 PEE sing 967 n n C41 H62 PEE sing 968 n n C42 H63 PEE sing 969 n n C42 H64 PEE sing 970 n n C43 H65 PEE sing 971 n n C43 H66 PEE sing 972 n n C44 H67 PEE sing 973 n n C44 H68 PEE sing 974 n n C45 H69 PEE sing 975 n n C45 H70 PEE sing 976 n n C46 H71 PEE sing 977 n n C46 H72 PEE sing 978 n n C47 H73 PEE sing 979 n n C47 H74 PEE sing 980 n n C47 H75 PEE sing 981 n n # _atom_sites.entry_id 6ZFT _atom_sites.fract_transf_matrix[1][1] 0.004709 _atom_sites.fract_transf_matrix[1][2] 0.002719 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005437 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002891 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 11 PG4 A 1 501 501 PG4 PG4 . L 12 6PE A 1 502 502 6PE 6PE . M 11 PG4 A 1 503 601 PG4 PG4 . N 13 CDL C 1 401 401 CDL CDL . O 14 HEM C 1 402 402 HEM HEM . P 14 HEM C 1 403 403 HEM HEM . Q 15 JHB C 1 404 404 JHB CK2 . R 16 LMT C 1 405 405 LMT LMT . S 11 PG4 C 1 406 406 PG4 PG4 . T 11 PG4 C 1 407 407 PG4 PG4 . U 13 CDL C 1 408 408 CDL CDL . V 17 PEE C 1 409 409 PEE PEE . W 18 PO4 C 1 410 410 PO4 PO4 . X 19 HEC D 1 501 501 HEC HEC . Y 13 CDL D 1 502 503 CDL CDL . Z 17 PEE D 1 503 204 PEE PEE . AA 20 FES E 1 201 201 FES FES . BA 21 PX4 E 1 202 202 PX4 PX4 . CA 13 CDL E 1 203 205 CDL CDL . DA 18 PO4 F 1 501 501 PO4 PO4 . EA 18 PO4 G 1 101 101 PO4 PO4 . FA 18 PO4 G 1 102 102 PO4 PO4 . GA 18 PO4 G 1 103 103 PO4 PO4 . HA 18 PO4 H 1 101 101 PO4 PO4 . IA 22 HOH A 1 601 505 HOH HOH . IA 22 HOH A 2 602 507 HOH HOH . IA 22 HOH A 3 603 506 HOH HOH . JA 22 HOH B 1 501 504 HOH HOH . KA 22 HOH C 1 501 411 HOH HOH . KA 22 HOH C 2 502 412 HOH HOH . KA 22 HOH C 3 503 414 HOH HOH . KA 22 HOH C 4 504 413 HOH HOH . LA 22 HOH D 1 601 504 HOH HOH . LA 22 HOH D 2 602 505 HOH HOH . MA 22 HOH F 1 601 502 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C23 PEE . . . Z 17 -55.823 -69.6 19.198 1 89.91 ? C23 PEE 503 D 1 HETATM 2 C C22 PEE . . . Z 17 -55.233 -68.283 18.694 1 90.35 ? C22 PEE 503 D 1 HETATM 3 C C21 PEE . . . Z 17 -55.395 -67.063 19.63 1 90.98 ? C21 PEE 503 D 1 HETATM 4 C C20 PEE . . . Z 17 -54.763 -65.733 19.147 1 91.2 ? C20 PEE 503 D 1 HETATM 5 C C19 PEE . . . Z 17 -54.179 -64.842 20.258 1 92.27 ? C19 PEE 503 D 1 HETATM 6 C C18 PEE . . . Z 17 -53.821 -63.406 19.85 1 93.14 ? C18 PEE 503 D 1 HETATM 7 C C17 PEE . . . Z 17 -52.783 -62.689 20.734 1 94.62 ? C17 PEE 503 D 1 HETATM 8 C C16 PEE . . . Z 17 -51.326 -63.147 20.525 1 95.86 ? C16 PEE 503 D 1 HETATM 9 C C15 PEE . . . Z 17 -50.264 -62.041 20.461 1 96.83 ? C15 PEE 503 D 1 HETATM 10 C C14 PEE . . . Z 17 -49.146 -62.273 19.446 1 97.5 ? C14 PEE 503 D 1 HETATM 11 C C13 PEE . . . Z 17 -47.875 -62.914 19.985 1 98.63 ? C13 PEE 503 D 1 HETATM 12 C C12 PEE . . . Z 17 -46.708 -62.96 18.992 1 99.51 ? C12 PEE 503 D 1 HETATM 13 C C11 PEE . . . Z 17 -46.901 -63.969 17.893 1 100.03 ? C11 PEE 503 D 1 HETATM 14 C C10 PEE . . . Z 17 -45.62 -64.436 17.237 1 102.07 ? C10 PEE 503 D 1 HETATM 15 O O4 PEE . . . Z 17 -45.468 -64.4 16.047 1 102.41 ? O4 PEE 503 D 1 HETATM 16 O O2 PEE . . . Z 17 -44.657 -64.89 18.072 1 105.26 ? O2 PEE 503 D 1 HETATM 17 C C2 PEE . . . Z 17 -43.881 -66.105 17.768 1 106.72 ? C2 PEE 503 D 1 HETATM 18 C C1 PEE . . . Z 17 -42.949 -65.901 16.584 1 107.36 ? C1 PEE 503 D 1 HETATM 19 O O3P PEE . . . Z 17 -42.654 -67.136 15.843 1 107.98 ? O3P PEE 503 D 1 HETATM 20 P P PEE . . . Z 17 -41.209 -67.332 15.147 1 108.6 ? P PEE 503 D 1 HETATM 21 O O2P PEE . . . Z 17 -40.377 -68.174 16.073 1 109.39 ? O2P PEE 503 D 1 HETATM 22 O O1P PEE . . . Z 17 -40.692 -66.01 14.656 1 108.87 ? O1P PEE 503 D 1 HETATM 23 O O4P PEE . . . Z 17 -41.402 -68.273 13.857 1 108.74 ? O4P PEE 503 D 1 HETATM 24 C C4 PEE . . . Z 17 -42.481 -68.022 12.919 1 109.24 ? C4 PEE 503 D 1 HETATM 25 C C5 PEE . . . Z 17 -42.028 -67.094 11.823 1 110.02 ? C5 PEE 503 D 1 HETATM 26 N N PEE . . . Z 17 -43.18 -66.404 11.188 1 110.65 ? N PEE 503 D 1 HETATM 27 C C3 PEE . . . Z 17 -44.801 -67.294 17.599 1 106.9 ? C3 PEE 503 D 1 HETATM 28 O O3 PEE . . . Z 17 -45.932 -67.17 18.495 1 108.34 ? O3 PEE 503 D 1 HETATM 29 C C30 PEE . . . Z 17 -45.753 -67.451 19.786 1 109.58 ? C30 PEE 503 D 1 HETATM 30 O O5 PEE . . . Z 17 -45.134 -68.398 20.191 1 110.44 ? O5 PEE 503 D 1 HETATM 31 C C31 PEE . . . Z 17 -46.444 -66.448 20.665 1 110.38 ? C31 PEE 503 D 1 HETATM 32 C C32 PEE . . . Z 17 -47.438 -67.049 21.618 1 110.4 ? C32 PEE 503 D 1 HETATM 33 C C33 PEE . . . Z 17 -48.892 -66.818 21.219 1 110.01 ? C33 PEE 503 D 1 HETATM 34 C C34 PEE . . . Z 17 -49.839 -67.82 21.843 1 110.46 ? C34 PEE 503 D 1 HETATM 35 C C35 PEE . . . Z 17 -51.264 -67.344 22.068 1 110.31 ? C35 PEE 503 D 1 HETATM 36 C C36 PEE . . . Z 17 -52.091 -68.257 22.976 1 110.46 ? C36 PEE 503 D 1 HETATM 37 C C37 PEE . . . Z 17 -53.245 -68.982 22.302 1 109.43 ? C37 PEE 503 D 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 400 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #