data_6ZFU
#
_model_server_result.job_id            G4-OjVWvyo5aPyJnpk-ICA 
_model_server_result.datetime_utc      '2025-02-17 09:05:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zfu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"AA","auth_seq_id":203}' 
#
_entry.id    6ZFU 
#
_exptl.entry_id    6ZFU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              744.034 
_entity.id                          16 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6ZFU 
_cell.length_a            210.74 
_cell.length_b            210.74 
_cell.length_c            343.935 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZFU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    decameric 
_pdbx_struct_assembly.oligomeric_count      10 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 16 T N N 
? 16 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf2 H SG CYS 12 H CYS 24 1_555 H SG CYS 56 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf3 H SG CYS 28 H CYS 40 1_555 H SG CYS 42 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc1 C NE2 HIS 82 C HIS 83 1_555 N FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc2 C NE2 HIS 96 C HIS 97 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc3 C NE2 HIS 181 C HIS 182 1_555 N FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc4 C NE2 HIS 195 C HIS 196 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
metalc ? metalc5 D NE2 HIS 40 D HIS 41 1_555 V FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc6 D SD MET 159 D MET 160 1_555 V FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
#
_chem_comp.formula           'C41 H78 N O8 P' 
_chem_comp.formula_weight    744.034 
_chem_comp.id                PEE 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DOPE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C5 PEE sing 855 n n 
C5 C4 PEE sing 856 n n 
C4 O4P PEE sing 857 n n 
O4P P PEE sing 858 n n 
O1P P PEE doub 859 n n 
C1 O3P PEE sing 860 n n 
C1 C2 PEE sing 861 n n 
O3P P PEE sing 862 n n 
P O2P PEE sing 863 n n 
C2 C3 PEE sing 864 n n 
C2 O2 PEE sing 865 n n 
C3 O3 PEE sing 866 n n 
O2 C10 PEE sing 867 n n 
C31 C30 PEE sing 868 n n 
C31 C32 PEE sing 869 n n 
C33 C32 PEE sing 870 n n 
C33 C34 PEE sing 871 n n 
C30 O3 PEE sing 872 n n 
C30 O5 PEE doub 873 n n 
C10 O4 PEE doub 874 n n 
C10 C11 PEE sing 875 n n 
C34 C35 PEE sing 876 n n 
C11 C12 PEE sing 877 n n 
C35 C36 PEE sing 878 n n 
C36 C37 PEE sing 879 n n 
C37 C38 PEE sing 880 n n 
C38 C39 PEE doub 881 z n 
C12 C13 PEE sing 882 n n 
C39 C40 PEE sing 883 n n 
C13 C14 PEE sing 884 n n 
C14 C15 PEE sing 885 n n 
C40 C41 PEE sing 886 n n 
C15 C16 PEE sing 887 n n 
C41 C42 PEE sing 888 n n 
C16 C17 PEE sing 889 n n 
C42 C43 PEE sing 890 n n 
C17 C18 PEE sing 891 n n 
C43 C44 PEE sing 892 n n 
C18 C19 PEE doub 893 z n 
C46 C47 PEE sing 894 n n 
C46 C45 PEE sing 895 n n 
C44 C45 PEE sing 896 n n 
C19 C20 PEE sing 897 n n 
C20 C21 PEE sing 898 n n 
C21 C22 PEE sing 899 n n 
C22 C23 PEE sing 900 n n 
C23 C24 PEE sing 901 n n 
C24 C25 PEE sing 902 n n 
C26 C25 PEE sing 903 n n 
C26 C27 PEE sing 904 n n 
C27 H7 PEE sing 905 n n 
C27 H8 PEE sing 906 n n 
C27 H82 PEE sing 907 n n 
C26 H5 PEE sing 908 n n 
C26 H6 PEE sing 909 n n 
C25 H12 PEE sing 910 n n 
C25 H4 PEE sing 911 n n 
C24 H10 PEE sing 912 n n 
C24 H11 PEE sing 913 n n 
C23 H83 PEE sing 914 n n 
C23 H9 PEE sing 915 n n 
C22 H2 PEE sing 916 n n 
C22 H3 PEE sing 917 n n 
C21 H14 PEE sing 918 n n 
C21 H1 PEE sing 919 n n 
C20 H16 PEE sing 920 n n 
C20 H13 PEE sing 921 n n 
C19 H18 PEE sing 922 n n 
C18 H20 PEE sing 923 n n 
C17 H22 PEE sing 924 n n 
C17 H19 PEE sing 925 n n 
C16 H21 PEE sing 926 n n 
C16 H28 PEE sing 927 n n 
C15 H23 PEE sing 928 n n 
C15 H24 PEE sing 929 n n 
C14 H25 PEE sing 930 n n 
C14 H26 PEE sing 931 n n 
C13 H17 PEE sing 932 n n 
C13 H27 PEE sing 933 n n 
C12 H15 PEE sing 934 n n 
C12 H29 PEE sing 935 n n 
C11 H30 PEE sing 936 n n 
C11 H31 PEE sing 937 n n 
C2 H32 PEE sing 938 n n 
C1 H33 PEE sing 939 n n 
C1 H34 PEE sing 940 n n 
O2P H35 PEE sing 941 n n 
C4 H36 PEE sing 942 n n 
C4 H37 PEE sing 943 n n 
C5 H38 PEE sing 944 n n 
C5 H39 PEE sing 945 n n 
N H40 PEE sing 946 n n 
N H41 PEE sing 947 n n 
C3 H43 PEE sing 948 n n 
C3 H44 PEE sing 949 n n 
C31 H45 PEE sing 950 n n 
C31 H46 PEE sing 951 n n 
C32 H47 PEE sing 952 n n 
C32 H48 PEE sing 953 n n 
C33 H49 PEE sing 954 n n 
C33 H50 PEE sing 955 n n 
C34 H51 PEE sing 956 n n 
C34 H52 PEE sing 957 n n 
C35 H53 PEE sing 958 n n 
C35 H54 PEE sing 959 n n 
C36 H55 PEE sing 960 n n 
C36 H56 PEE sing 961 n n 
C37 H57 PEE sing 962 n n 
C37 H58 PEE sing 963 n n 
C38 H59 PEE sing 964 n n 
C39 H60 PEE sing 965 n n 
C40 H81 PEE sing 966 n n 
C40 H61 PEE sing 967 n n 
C41 H80 PEE sing 968 n n 
C41 H62 PEE sing 969 n n 
C42 H63 PEE sing 970 n n 
C42 H64 PEE sing 971 n n 
C43 H65 PEE sing 972 n n 
C43 H66 PEE sing 973 n n 
C44 H67 PEE sing 974 n n 
C44 H68 PEE sing 975 n n 
C45 H69 PEE sing 976 n n 
C45 H70 PEE sing 977 n n 
C46 H71 PEE sing 978 n n 
C46 H72 PEE sing 979 n n 
C47 H73 PEE sing 980 n n 
C47 H74 PEE sing 981 n n 
C47 H75 PEE sing 982 n n 
#
_atom_sites.entry_id                     6ZFU 
_atom_sites.fract_transf_matrix[1][1]    0.004745 
_atom_sites.fract_transf_matrix[1][2]    0.00274 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005479 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002908 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 11 PG4 A 1 501 501 PG4 PG4 . 
L 12 6PE A 1 502 502 6PE 6PE . 
M 13 CDL A 1 503 401 CDL CDL . 
N 14 HEM C 1 401 402 HEM HEM . 
O 14 HEM C 1 402 403 HEM HEM . 
P 15 LMT C 1 403 405 LMT LMT . 
Q 11 PG4 C 1 404 406 PG4 PG4 . 
R 11 PG4 C 1 405 407 PG4 PG4 . 
S 13 CDL C 1 406 408 CDL CDL . 
T 16 PEE C 1 407 409 PEE PEE . 
U 17 JHE C 1 408 404 JHE RKA . 
V 18 HEC D 1 501 501 HEC HEC . 
W 19 PO4 D 1 502 502 PO4 PO4 . 
X 13 CDL D 1 503 503 CDL CDL . 
Y 20 FES E 1 201 201 FES FES . 
Z 21 PX4 E 1 202 202 PX4 PX4 . 
AA 16 PEE E 1 203 204 PEE PEE . 
BA 13 CDL E 1 204 205 CDL CDL . 
CA 19 PO4 F 1 501 501 PO4 PO4 . 
DA 19 PO4 G 1 101 101 PO4 PO4 . 
EA 19 PO4 G 1 102 102 PO4 PO4 . 
FA 19 PO4 G 1 103 103 PO4 PO4 . 
GA 22 HOH A 1 601 503 HOH HOH . 
GA 22 HOH A 2 602 505 HOH HOH . 
GA 22 HOH A 3 603 504 HOH HOH . 
HA 22 HOH C 1 501 501 HOH HOH . 
IA 22 HOH G 1 201 104 HOH HOH . 
JA 22 HOH I 1 501 501 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C27 PEE . . . AA 16 -58.297 -65.763 17.451 1 128.75 ? C27 PEE 203 E 1 
HETATM 2 C C26 PEE . . . AA 16 -57.737 -67.001 16.75 1 133.66 ? C26 PEE 203 E 1 
HETATM 3 C C25 PEE . . . AA 16 -57.521 -68.249 17.646 1 134.48 ? C25 PEE 203 E 1 
HETATM 4 C C24 PEE . . . AA 16 -56.099 -68.864 17.674 1 130.29 ? C24 PEE 203 E 1 
HETATM 5 C C23 PEE . . . AA 16 -55.261 -68.37 18.872 1 128.68 ? C23 PEE 203 E 1 
HETATM 6 C C22 PEE . . . AA 16 -54.692 -66.959 18.655 1 126.75 ? C22 PEE 203 E 1 
HETATM 7 C C21 PEE . . . AA 16 -54.314 -66.14 19.887 1 126.71 ? C21 PEE 203 E 1 
HETATM 8 C C20 PEE . . . AA 16 -54.019 -64.707 19.47 1 124 ? C20 PEE 203 E 1 
HETATM 9 C C19 PEE . . . AA 16 -53.459 -63.917 20.649 1 124.24 ? C19 PEE 203 E 1 
HETATM 10 C C18 PEE . . . AA 16 -53.089 -62.497 20.223 1 122.74 ? C18 PEE 203 E 1 
HETATM 11 C C17 PEE . . . AA 16 -51.996 -61.828 21.059 1 123.5 ? C17 PEE 203 E 1 
HETATM 12 C C16 PEE . . . AA 16 -50.633 -62.514 20.948 1 124.09 ? C16 PEE 203 E 1 
HETATM 13 C C15 PEE . . . AA 16 -49.539 -61.594 20.42 1 123.44 ? C15 PEE 203 E 1 
HETATM 14 C C14 PEE . . . AA 16 -48.636 -62.365 19.472 1 122.76 ? C14 PEE 203 E 1 
HETATM 15 C C13 PEE . . . AA 16 -47.177 -62.408 19.901 1 124.33 ? C13 PEE 203 E 1 
HETATM 16 C C12 PEE . . . AA 16 -46.221 -62.434 18.703 1 124.72 ? C12 PEE 203 E 1 
HETATM 17 C C11 PEE . . . AA 16 -46.47 -63.537 17.672 1 124.04 ? C11 PEE 203 E 1 
HETATM 18 C C10 PEE . . . AA 16 -45.175 -64.016 17.059 1 127.55 ? C10 PEE 203 E 1 
HETATM 19 O O4 PEE . . . AA 16 -45.091 -64.087 15.846 1 127.79 ? O4 PEE 203 E 1 
HETATM 20 O O2 PEE . . . AA 16 -44.044 -64.427 17.905 1 132.17 ? O2 PEE 203 E 1 
HETATM 21 C C2 PEE . . . AA 16 -43.281 -65.619 17.559 1 135.22 ? C2 PEE 203 E 1 
HETATM 22 C C1 PEE . . . AA 16 -42.258 -65.358 16.424 1 136.32 ? C1 PEE 203 E 1 
HETATM 23 O O3P PEE . . . AA 16 -42.154 -66.347 15.387 1 134.69 ? O3P PEE 203 E 1 
HETATM 24 P P PEE . . . AA 16 -40.72 -66.878 14.844 1 135.78 ? P PEE 203 E 1 
HETATM 25 O O2P PEE . . . AA 16 -40.009 -67.528 16.008 1 136.01 ? O2P PEE 203 E 1 
HETATM 26 O O1P PEE . . . AA 16 -39.981 -65.791 14.107 1 136.66 ? O1P PEE 203 E 1 
HETATM 27 O O4P PEE . . . AA 16 -41.087 -68.032 13.762 1 134.28 ? O4P PEE 203 E 1 
HETATM 28 C C4 PEE . . . AA 16 -42.128 -67.963 12.78 1 130.38 ? C4 PEE 203 E 1 
HETATM 29 C C5 PEE . . . AA 16 -41.663 -67.204 11.542 1 129.97 ? C5 PEE 203 E 1 
HETATM 30 N N PEE . . . AA 16 -42.739 -66.281 11.083 1 127.97 ? N PEE 203 E 1 
HETATM 31 C C3 PEE . . . AA 16 -44.156 -66.854 17.3 1 135.17 ? C3 PEE 203 E 1 
HETATM 32 O O3 PEE . . . AA 16 -45.358 -66.783 18.068 1 138.51 ? O3 PEE 203 E 1 
HETATM 33 C C30 PEE . . . AA 16 -45.412 -67.08 19.491 1 140.44 ? C30 PEE 203 E 1 
HETATM 34 O O5 PEE . . . AA 16 -45.347 -68.238 19.869 1 142.56 ? O5 PEE 203 E 1 
HETATM 35 C C31 PEE . . . AA 16 -45.576 -65.945 20.473 1 142.35 ? C31 PEE 203 E 1 
HETATM 36 C C32 PEE . . . AA 16 -46.627 -66.28 21.542 1 141.49 ? C32 PEE 203 E 1 
HETATM 37 C C33 PEE . . . AA 16 -48.09 -66.169 21.102 1 136.17 ? C33 PEE 203 E 1 
HETATM 38 C C34 PEE . . . AA 16 -48.914 -67.251 21.802 1 132.96 ? C34 PEE 203 E 1 
HETATM 39 C C35 PEE . . . AA 16 -50.394 -66.894 21.972 1 128.82 ? C35 PEE 203 E 1 
HETATM 40 C C36 PEE . . . AA 16 -51.009 -67.649 23.148 1 128.27 ? C36 PEE 203 E 1 
HETATM 41 C C37 PEE . . . AA 16 -52.274 -68.405 22.765 1 125.55 ? C37 PEE 203 E 1 
#
_model_server_stats.io_time_ms              156 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    41 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           41 
#