data_6ZFU
#
_model_server_result.job_id            1cD2aWi1xOieEAyCkG2pIQ 
_model_server_result.datetime_utc      '2024-11-23 14:17:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zfu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":401}' 
#
_entry.id    6ZFU 
#
_exptl.entry_id    6ZFU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          14 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6ZFU 
_cell.length_a            210.74 
_cell.length_b            210.74 
_cell.length_c            343.935 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZFU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    decameric 
_pdbx_struct_assembly.oligomeric_count      10 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 14 N N N 
? 14 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf2 H SG CYS 12 H CYS 24 1_555 H SG CYS 56 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf3 H SG CYS 28 H CYS 40 1_555 H SG CYS 42 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc1 C NE2 HIS 82 C HIS 83 1_555 N FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc2 C NE2 HIS 96 C HIS 97 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc3 C NE2 HIS 181 C HIS 182 1_555 N FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc4 C NE2 HIS 195 C HIS 196 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
metalc ? metalc5 D NE2 HIS 40 D HIS 41 1_555 V FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc6 D SD MET 159 D MET 160 1_555 V FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 531 n n 
CHA C4D HEM doub 532 n n 
CHA HHA HEM sing 533 n n 
CHB C4A HEM sing 534 n n 
CHB C1B HEM doub 535 n n 
CHB HHB HEM sing 536 n n 
CHC C4B HEM sing 537 n n 
CHC C1C HEM doub 538 n n 
CHC HHC HEM sing 539 n n 
CHD C4C HEM doub 540 n n 
CHD C1D HEM sing 541 n n 
CHD HHD HEM sing 542 n n 
C1A C2A HEM doub 543 n y 
C1A NA HEM sing 544 n y 
C2A C3A HEM sing 545 n y 
C2A CAA HEM sing 546 n n 
C3A C4A HEM doub 547 n y 
C3A CMA HEM sing 548 n n 
C4A NA HEM sing 549 n y 
CMA HMA HEM sing 550 n n 
CMA HMAA HEM sing 551 n n 
CMA HMAB HEM sing 552 n n 
CAA CBA HEM sing 553 n n 
CAA HAA HEM sing 554 n n 
CAA HAAA HEM sing 555 n n 
CBA CGA HEM sing 556 n n 
CBA HBA HEM sing 557 n n 
CBA HBAA HEM sing 558 n n 
CGA O1A HEM doub 559 n n 
CGA O2A HEM sing 560 n n 
C1B C2B HEM sing 561 n n 
C1B NB HEM sing 562 n n 
C2B C3B HEM doub 563 n n 
C2B CMB HEM sing 564 n n 
C3B C4B HEM sing 565 n n 
C3B CAB HEM sing 566 n n 
C4B NB HEM doub 567 n n 
CMB HMB HEM sing 568 n n 
CMB HMBA HEM sing 569 n n 
CMB HMBB HEM sing 570 n n 
CAB CBB HEM doub 571 n n 
CAB HAB HEM sing 572 n n 
CBB HBB HEM sing 573 n n 
CBB HBBA HEM sing 574 n n 
C1C C2C HEM sing 575 n y 
C1C NC HEM sing 576 n y 
C2C C3C HEM doub 577 n y 
C2C CMC HEM sing 578 n n 
C3C C4C HEM sing 579 n y 
C3C CAC HEM sing 580 n n 
C4C NC HEM sing 581 n y 
CMC HMC HEM sing 582 n n 
CMC HMCA HEM sing 583 n n 
CMC HMCB HEM sing 584 n n 
CAC CBC HEM doub 585 n n 
CAC HAC HEM sing 586 n n 
CBC HBC HEM sing 587 n n 
CBC HBCA HEM sing 588 n n 
C1D C2D HEM sing 589 n n 
C1D ND HEM doub 590 n n 
C2D C3D HEM doub 591 n n 
C2D CMD HEM sing 592 n n 
C3D C4D HEM sing 593 n n 
C3D CAD HEM sing 594 n n 
C4D ND HEM sing 595 n n 
CMD HMD HEM sing 596 n n 
CMD HMDA HEM sing 597 n n 
CMD HMDB HEM sing 598 n n 
CAD CBD HEM sing 599 n n 
CAD HAD HEM sing 600 n n 
CAD HADA HEM sing 601 n n 
CBD CGD HEM sing 602 n n 
CBD HBD HEM sing 603 n n 
CBD HBDA HEM sing 604 n n 
CGD O1D HEM doub 605 n n 
CGD O2D HEM sing 606 n n 
O2A H2A HEM sing 607 n n 
O2D H2D HEM sing 608 n n 
FE NA HEM sing 609 n n 
FE NB HEM sing 610 n n 
FE NC HEM sing 611 n n 
FE ND HEM sing 612 n n 
#
_atom_sites.entry_id                     6ZFU 
_atom_sites.fract_transf_matrix[1][1]    0.004745 
_atom_sites.fract_transf_matrix[1][2]    0.00274 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005479 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002908 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 11 PG4 A 1 501 501 PG4 PG4 . 
L 12 6PE A 1 502 502 6PE 6PE . 
M 13 CDL A 1 503 401 CDL CDL . 
N 14 HEM C 1 401 402 HEM HEM . 
O 14 HEM C 1 402 403 HEM HEM . 
P 15 LMT C 1 403 405 LMT LMT . 
Q 11 PG4 C 1 404 406 PG4 PG4 . 
R 11 PG4 C 1 405 407 PG4 PG4 . 
S 13 CDL C 1 406 408 CDL CDL . 
T 16 PEE C 1 407 409 PEE PEE . 
U 17 JHE C 1 408 404 JHE RKA . 
V 18 HEC D 1 501 501 HEC HEC . 
W 19 PO4 D 1 502 502 PO4 PO4 . 
X 13 CDL D 1 503 503 CDL CDL . 
Y 20 FES E 1 201 201 FES FES . 
Z 21 PX4 E 1 202 202 PX4 PX4 . 
AA 16 PEE E 1 203 204 PEE PEE . 
BA 13 CDL E 1 204 205 CDL CDL . 
CA 19 PO4 F 1 501 501 PO4 PO4 . 
DA 19 PO4 G 1 101 101 PO4 PO4 . 
EA 19 PO4 G 1 102 102 PO4 PO4 . 
FA 19 PO4 G 1 103 103 PO4 PO4 . 
GA 22 HOH A 1 601 503 HOH HOH . 
GA 22 HOH A 2 602 505 HOH HOH . 
GA 22 HOH A 3 603 504 HOH HOH . 
HA 22 HOH C 1 501 501 HOH HOH . 
IA 22 HOH G 1 201 104 HOH HOH . 
JA 22 HOH I 1 501 501 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . N 14 -48.402 -81.46 33.307 1 107.84 ? CHA HEM 401 C 1 
HETATM 2 C CHB HEM . . . N 14 -51.617 -78.506 35.364 1 106.34 ? CHB HEM 401 C 1 
HETATM 3 C CHC HEM . . . N 14 -54.942 -79.903 32.094 1 104.37 ? CHC HEM 401 C 1 
HETATM 4 C CHD HEM . . . N 14 -51.769 -83.07 30.248 1 106.57 ? CHD HEM 401 C 1 
HETATM 5 C C1A HEM . . . N 14 -48.991 -80.517 34.114 1 107.23 ? C1A HEM 401 C 1 
HETATM 6 C C2A HEM . . . N 14 -48.312 -79.8 35.135 1 108.25 ? C2A HEM 401 C 1 
HETATM 7 C C3A HEM . . . N 14 -49.198 -78.961 35.726 1 107.81 ? C3A HEM 401 C 1 
HETATM 8 C C4A HEM . . . N 14 -50.441 -79.171 35.066 1 106.92 ? C4A HEM 401 C 1 
HETATM 9 C CMA HEM . . . N 14 -48.887 -77.998 36.868 1 108.02 ? CMA HEM 401 C 1 
HETATM 10 C CAA HEM . . . N 14 -46.848 -79.899 35.499 1 110.02 ? CAA HEM 401 C 1 
HETATM 11 C CBA HEM . . . N 14 -46.077 -79.01 34.507 1 110.92 ? CBA HEM 401 C 1 
HETATM 12 C CGA HEM . . . N 14 -44.594 -79.23 34.625 1 112.29 ? CGA HEM 401 C 1 
HETATM 13 O O1A HEM . . . N 14 -43.978 -78.926 35.678 1 114.1 ? O1A HEM 401 C 1 
HETATM 14 O O2A HEM . . . N 14 -43.978 -79.714 33.656 1 111.7 ? O2A HEM 401 C 1 
HETATM 15 C C1B HEM . . . N 14 -52.794 -78.645 34.609 1 105.36 ? C1B HEM 401 C 1 
HETATM 16 C C2B HEM . . . N 14 -53.949 -77.892 34.944 1 105.11 ? C2B HEM 401 C 1 
HETATM 17 C C3B HEM . . . N 14 -54.923 -78.262 34.053 1 105.13 ? C3B HEM 401 C 1 
HETATM 18 C C4B HEM . . . N 14 -54.283 -79.275 33.154 1 104.55 ? C4B HEM 401 C 1 
HETATM 19 C CMB HEM . . . N 14 -54.033 -76.889 36.083 1 104.98 ? CMB HEM 401 C 1 
HETATM 20 C CAB HEM . . . N 14 -56.331 -77.767 33.958 1 105.79 ? CAB HEM 401 C 1 
HETATM 21 C CBB HEM . . . N 14 -57.02 -77.139 34.923 1 105.6 ? CBB HEM 401 C 1 
HETATM 22 C C1C HEM . . . N 14 -54.398 -80.901 31.292 1 104.41 ? C1C HEM 401 C 1 
HETATM 23 C C2C HEM . . . N 14 -55.066 -81.64 30.283 1 104.63 ? C2C HEM 401 C 1 
HETATM 24 C C3C HEM . . . N 14 -54.147 -82.555 29.754 1 105.6 ? C3C HEM 401 C 1 
HETATM 25 C C4C HEM . . . N 14 -52.923 -82.349 30.469 1 105.88 ? C4C HEM 401 C 1 
HETATM 26 C CMC HEM . . . N 14 -56.507 -81.46 29.861 1 103.69 ? CMC HEM 401 C 1 
HETATM 27 C CAC HEM . . . N 14 -54.312 -83.569 28.67 1 105.66 ? CAC HEM 401 C 1 
HETATM 28 C CBC HEM . . . N 14 -55.445 -83.814 28.019 1 105.4 ? CBC HEM 401 C 1 
HETATM 29 C C1D HEM . . . N 14 -50.583 -82.864 30.947 1 106.53 ? C1D HEM 401 C 1 
HETATM 30 C C2D HEM . . . N 14 -49.359 -83.643 30.656 1 107.12 ? C2D HEM 401 C 1 
HETATM 31 C C3D HEM . . . N 14 -48.42 -83.196 31.5 1 107.66 ? C3D HEM 401 C 1 
HETATM 32 C C4D HEM . . . N 14 -49.083 -82.145 32.308 1 107.31 ? C4D HEM 401 C 1 
HETATM 33 C CMD HEM . . . N 14 -49.158 -84.728 29.624 1 106.99 ? CMD HEM 401 C 1 
HETATM 34 C CAD HEM . . . N 14 -46.994 -83.702 31.575 1 108.54 ? CAD HEM 401 C 1 
HETATM 35 C CBD HEM . . . N 14 -46.088 -82.884 30.653 1 110.84 ? CBD HEM 401 C 1 
HETATM 36 C CGD HEM . . . N 14 -45.487 -81.704 31.398 1 112.78 ? CGD HEM 401 C 1 
HETATM 37 O O1D HEM . . . N 14 -44.884 -81.884 32.483 1 113.07 ? O1D HEM 401 C 1 
HETATM 38 O O2D HEM . . . N 14 -45.576 -80.537 30.934 1 113.56 ? O2D HEM 401 C 1 
HETATM 39 N NA HEM . . . N 14 -50.31 -80.141 34.087 1 106.27 ? NA HEM 401 C 1 
HETATM 40 N NB HEM . . . N 14 -53.019 -79.454 33.553 1 104.72 ? NB HEM 401 C 1 
HETATM 41 N NC HEM . . . N 14 -53.124 -81.372 31.41 1 104.79 ? NC HEM 401 C 1 
HETATM 42 N ND HEM . . . N 14 -50.371 -81.982 31.938 1 106.16 ? ND HEM 401 C 1 
HETATM 43 FE FE HEM . . . N 14 -51.601 -80.772 32.691 1 104.84 ? FE HEM 401 C 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    55 
_model_server_stats.query_time_ms           346 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           43 
#