data_6ZFU # _model_server_result.job_id GAVkj2tpOhOdlk3FSc_Z3A _model_server_result.datetime_utc '2024-11-05 04:54:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zfu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":501}' # _entry.id 6ZFU # _exptl.entry_id 6ZFU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 18 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ZFU _cell.length_a 210.74 _cell.length_b 210.74 _cell.length_c 343.935 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZFU _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 18 _struct_asym.id V _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 H SG CYS 12 H CYS 24 1_555 H SG CYS 56 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 H SG CYS 28 H CYS 40 1_555 H SG CYS 42 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc1 C NE2 HIS 82 C HIS 83 1_555 N FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc2 C NE2 HIS 96 C HIS 97 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc3 C NE2 HIS 181 C HIS 182 1_555 N FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc4 C NE2 HIS 195 C HIS 196 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc5 D NE2 HIS 40 D HIS 41 1_555 V FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc6 D SD MET 159 D MET 160 1_555 V FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 447 n n FE NB HEC sing 448 n n FE NC HEC sing 449 n n FE ND HEC sing 450 n n CHA C1A HEC doub 451 n n CHA C4D HEC sing 452 n n CHA HHA HEC sing 453 n n CHB C4A HEC doub 454 n n CHB C1B HEC sing 455 n n CHB HHB HEC sing 456 n n CHC C4B HEC doub 457 n n CHC C1C HEC sing 458 n n CHC HHC HEC sing 459 n n CHD C4C HEC doub 460 n n CHD C1D HEC sing 461 n n CHD HHD HEC sing 462 n n NA C1A HEC sing 463 n y NA C4A HEC sing 464 n y C1A C2A HEC sing 465 n y C2A C3A HEC doub 466 n y C2A CAA HEC sing 467 n n C3A C4A HEC sing 468 n y C3A CMA HEC sing 469 n n CMA HMA1 HEC sing 470 n n CMA HMA2 HEC sing 471 n n CMA HMA3 HEC sing 472 n n CAA CBA HEC sing 473 n n CAA HAA1 HEC sing 474 n n CAA HAA2 HEC sing 475 n n CBA CGA HEC sing 476 n n CBA HBA1 HEC sing 477 n n CBA HBA2 HEC sing 478 n n CGA O1A HEC doub 479 n n CGA O2A HEC sing 480 n n O2A H2A HEC sing 481 n n NB C1B HEC sing 482 n y NB C4B HEC sing 483 n y C1B C2B HEC doub 484 n y C2B C3B HEC sing 485 n y C2B CMB HEC sing 486 n n C3B C4B HEC sing 487 n y C3B CAB HEC doub 488 e n CMB HMB1 HEC sing 489 n n CMB HMB2 HEC sing 490 n n CMB HMB3 HEC sing 491 n n CAB CBB HEC sing 492 n n CAB HAB HEC sing 493 n n CBB HBB1 HEC sing 494 n n CBB HBB2 HEC sing 495 n n CBB HBB3 HEC sing 496 n n NC C1C HEC sing 497 n y NC C4C HEC sing 498 n y C1C C2C HEC doub 499 n y C2C C3C HEC sing 500 n y C2C CMC HEC sing 501 n n C3C C4C HEC sing 502 n y C3C CAC HEC doub 503 e n CMC HMC1 HEC sing 504 n n CMC HMC2 HEC sing 505 n n CMC HMC3 HEC sing 506 n n CAC CBC HEC sing 507 n n CAC HAC HEC sing 508 n n CBC HBC1 HEC sing 509 n n CBC HBC2 HEC sing 510 n n CBC HBC3 HEC sing 511 n n ND C1D HEC sing 512 n y ND C4D HEC sing 513 n y C1D C2D HEC doub 514 n y C2D C3D HEC sing 515 n y C2D CMD HEC sing 516 n n C3D C4D HEC doub 517 n y C3D CAD HEC sing 518 n n CMD HMD1 HEC sing 519 n n CMD HMD2 HEC sing 520 n n CMD HMD3 HEC sing 521 n n CAD CBD HEC sing 522 n n CAD HAD1 HEC sing 523 n n CAD HAD2 HEC sing 524 n n CBD CGD HEC sing 525 n n CBD HBD1 HEC sing 526 n n CBD HBD2 HEC sing 527 n n CGD O1D HEC doub 528 n n CGD O2D HEC sing 529 n n O2D H2D HEC sing 530 n n # _atom_sites.entry_id 6ZFU _atom_sites.fract_transf_matrix[1][1] 0.004745 _atom_sites.fract_transf_matrix[1][2] 0.00274 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005479 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002908 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 11 PG4 A 1 501 501 PG4 PG4 . L 12 6PE A 1 502 502 6PE 6PE . M 13 CDL A 1 503 401 CDL CDL . N 14 HEM C 1 401 402 HEM HEM . O 14 HEM C 1 402 403 HEM HEM . P 15 LMT C 1 403 405 LMT LMT . Q 11 PG4 C 1 404 406 PG4 PG4 . R 11 PG4 C 1 405 407 PG4 PG4 . S 13 CDL C 1 406 408 CDL CDL . T 16 PEE C 1 407 409 PEE PEE . U 17 JHE C 1 408 404 JHE RKA . V 18 HEC D 1 501 501 HEC HEC . W 19 PO4 D 1 502 502 PO4 PO4 . X 13 CDL D 1 503 503 CDL CDL . Y 20 FES E 1 201 201 FES FES . Z 21 PX4 E 1 202 202 PX4 PX4 . AA 16 PEE E 1 203 204 PEE PEE . BA 13 CDL E 1 204 205 CDL CDL . CA 19 PO4 F 1 501 501 PO4 PO4 . DA 19 PO4 G 1 101 101 PO4 PO4 . EA 19 PO4 G 1 102 102 PO4 PO4 . FA 19 PO4 G 1 103 103 PO4 PO4 . GA 22 HOH A 1 601 503 HOH HOH . GA 22 HOH A 2 602 505 HOH HOH . GA 22 HOH A 3 603 504 HOH HOH . HA 22 HOH C 1 501 501 HOH HOH . IA 22 HOH G 1 201 104 HOH HOH . JA 22 HOH I 1 501 501 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . V 18 -17.826 -83.018 38.607 1 153.63 ? FE HEC 501 D 1 HETATM 2 C CHA HEC . . . V 18 -20.246 -83.051 41.121 1 153.2 ? CHA HEC 501 D 1 HETATM 3 C CHB HEC . . . V 18 -19.331 -80.236 37.227 1 150.79 ? CHB HEC 501 D 1 HETATM 4 C CHC HEC . . . V 18 -15.146 -82.66 36.453 1 159.4 ? CHC HEC 501 D 1 HETATM 5 C CHD HEC . . . V 18 -16.439 -85.898 39.938 1 160.5 ? CHD HEC 501 D 1 HETATM 6 N NA HEC . . . V 18 -19.502 -81.842 39.096 1 151.84 ? NA HEC 501 D 1 HETATM 7 C C1A HEC . . . V 18 -20.367 -81.976 40.129 1 151.26 ? C1A HEC 501 D 1 HETATM 8 C C2A HEC . . . V 18 -21.458 -80.968 40.216 1 149.34 ? C2A HEC 501 D 1 HETATM 9 C C3A HEC . . . V 18 -21.178 -80.124 39.042 1 149.79 ? C3A HEC 501 D 1 HETATM 10 C C4A HEC . . . V 18 -19.964 -80.753 38.453 1 151.08 ? C4A HEC 501 D 1 HETATM 11 C CMA HEC . . . V 18 -21.918 -78.907 38.549 1 149.89 ? CMA HEC 501 D 1 HETATM 12 C CAA HEC . . . V 18 -22.583 -80.868 41.227 1 147.5 ? CAA HEC 501 D 1 HETATM 13 C CBA HEC . . . V 18 -22.374 -79.798 42.291 1 148.24 ? CBA HEC 501 D 1 HETATM 14 C CGA HEC . . . V 18 -23.629 -79.703 43.144 1 148.56 ? CGA HEC 501 D 1 HETATM 15 O O1A HEC . . . V 18 -24.082 -80.725 43.706 1 149.91 ? O1A HEC 501 D 1 HETATM 16 O O2A HEC . . . V 18 -24.202 -78.599 43.259 1 149.04 ? O2A HEC 501 D 1 HETATM 17 N NB HEC . . . V 18 -17.327 -81.671 37.07 1 153.22 ? NB HEC 501 D 1 HETATM 18 C C1B HEC . . . V 18 -18.037 -80.602 36.643 1 151.46 ? C1B HEC 501 D 1 HETATM 19 C C2B HEC . . . V 18 -17.453 -79.796 35.546 1 151.88 ? C2B HEC 501 D 1 HETATM 20 C C3B HEC . . . V 18 -16.193 -80.528 35.328 1 155.44 ? C3B HEC 501 D 1 HETATM 21 C C4B HEC . . . V 18 -16.221 -81.655 36.303 1 155.9 ? C4B HEC 501 D 1 HETATM 22 C CMB HEC . . . V 18 -18.03 -78.569 34.883 1 149.46 ? CMB HEC 501 D 1 HETATM 23 C CAB HEC . . . V 18 -15.101 -80.244 34.347 1 157.13 ? CAB HEC 501 D 1 HETATM 24 C CBB HEC . . . V 18 -15.093 -79.099 33.352 1 156.07 ? CBB HEC 501 D 1 HETATM 25 N NC HEC . . . V 18 -16.07 -84.109 38.252 1 158.64 ? NC HEC 501 D 1 HETATM 26 C C1C HEC . . . V 18 -15.083 -83.83 37.366 1 161.42 ? C1C HEC 501 D 1 HETATM 27 C C2C HEC . . . V 18 -13.936 -84.794 37.371 1 164.76 ? C2C HEC 501 D 1 HETATM 28 C C3C HEC . . . V 18 -14.351 -85.751 38.426 1 163.44 ? C3C HEC 501 D 1 HETATM 29 C C4C HEC . . . V 18 -15.656 -85.23 38.886 1 160.75 ? C4C HEC 501 D 1 HETATM 30 C CMC HEC . . . V 18 -12.697 -84.742 36.504 1 168.58 ? CMC HEC 501 D 1 HETATM 31 C CAC HEC . . . V 18 -13.701 -86.98 38.983 1 164.17 ? CAC HEC 501 D 1 HETATM 32 C CBC HEC . . . V 18 -12.368 -87.564 38.566 1 166.21 ? CBC HEC 501 D 1 HETATM 33 N ND HEC . . . V 18 -18.273 -84.267 40.243 1 156.05 ? ND HEC 501 D 1 HETATM 34 C C1D HEC . . . V 18 -17.619 -85.378 40.651 1 159.37 ? C1D HEC 501 D 1 HETATM 35 C C2D HEC . . . V 18 -18.174 -86.052 41.863 1 160.72 ? C2D HEC 501 D 1 HETATM 36 C C3D HEC . . . V 18 -19.327 -85.198 42.215 1 157.94 ? C3D HEC 501 D 1 HETATM 37 C C4D HEC . . . V 18 -19.269 -84.148 41.155 1 155.88 ? C4D HEC 501 D 1 HETATM 38 C CMD HEC . . . V 18 -17.687 -87.311 42.545 1 162.73 ? CMD HEC 501 D 1 HETATM 39 C CAD HEC . . . V 18 -20.3 -85.343 43.372 1 155.82 ? CAD HEC 501 D 1 HETATM 40 C CBD HEC . . . V 18 -19.825 -84.427 44.504 1 155.77 ? CBD HEC 501 D 1 HETATM 41 C CGD HEC . . . V 18 -20.628 -84.559 45.779 1 154.84 ? CGD HEC 501 D 1 HETATM 42 O O1D HEC . . . V 18 -20.05 -84.33 46.86 1 155.5 ? O1D HEC 501 D 1 HETATM 43 O O2D HEC . . . V 18 -21.836 -84.87 45.738 1 154.27 ? O2D HEC 501 D 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #