data_6ZG3
#
_model_server_result.job_id            VC4xdlOMsNFoonvIvqyYUw 
_model_server_result.datetime_utc      '2024-12-21 15:11:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zg3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":501}' 
#
_entry.id    6ZG3 
#
_exptl.entry_id    6ZG3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              510.615 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECYL-BETA-D-MALTOSIDE 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         88.997 
_cell.angle_beta          102.271 
_cell.angle_gamma         102.244 
_cell.entry_id            6ZG3 
_cell.length_a            97.29 
_cell.length_b            110.47 
_cell.length_c            110.5 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZG3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA pentameric 5 author_and_software_defined_assembly 1 
PISA pentameric 5 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,G,H,I,K,V,W,X,Y,Z,AA,BA 1 1 
B,C,D,F,J,L,M,N,O,P,Q,R,S,T,U,CA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 M N N 
? 7 N N N 
? 7 S N N 
? 7 W N N 
? 7 X N N 
? 7 Z N N 
? 7 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 22 E CYS 22 1_555 E SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf2 E SG CYS 50 E CYS 50 1_555 E SG CYS 106 E CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 J SG CYS 22 J CYS 22 1_555 J SG CYS 96 J CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf4 J SG CYS 50 J CYS 50 1_555 J SG CYS 106 J CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
#
_chem_comp.formula           'C24 H46 O11' 
_chem_comp.formula_weight    510.615 
_chem_comp.id                LMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECYL-BETA-D-MALTOSIDE 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1B C2B LMT sing 212 n n 
C1B O1B LMT sing 213 n n 
C1B O5B LMT sing 214 n n 
C1B H1B LMT sing 215 n n 
C2B C3B LMT sing 216 n n 
C2B O2B LMT sing 217 n n 
C2B H2B LMT sing 218 n n 
C3B C4B LMT sing 219 n n 
C3B O3B LMT sing 220 n n 
C3B H3B LMT sing 221 n n 
C4B C5B LMT sing 222 n n 
C4B O4' LMT sing 223 n n 
C4B H4B LMT sing 224 n n 
C5B C6B LMT sing 225 n n 
C5B O5B LMT sing 226 n n 
C5B H5B LMT sing 227 n n 
C6B O6B LMT sing 228 n n 
C6B "H6'2" LMT sing 229 n n 
C6B "H6'1" LMT sing 230 n n 
O1B C4' LMT sing 231 n n 
O2B H2O1 LMT sing 232 n n 
O3B H3O1 LMT sing 233 n n 
O4' H4O1 LMT sing 234 n n 
O6B H6B LMT sing 235 n n 
C1' C2' LMT sing 236 n n 
C1' O1' LMT sing 237 n n 
C1' O5' LMT sing 238 n n 
C1' H1' LMT sing 239 n n 
C2' C3' LMT sing 240 n n 
C2' O2' LMT sing 241 n n 
C2' H2' LMT sing 242 n n 
C3' C4' LMT sing 243 n n 
C3' O3' LMT sing 244 n n 
C3' H3' LMT sing 245 n n 
C4' C5' LMT sing 246 n n 
C4' H4' LMT sing 247 n n 
C5' C6' LMT sing 248 n n 
C5' O5' LMT sing 249 n n 
C5' H5' LMT sing 250 n n 
C6' O6' LMT sing 251 n n 
C6' H6D LMT sing 252 n n 
C6' H6E LMT sing 253 n n 
O1' C1 LMT sing 254 n n 
O2' H2O2 LMT sing 255 n n 
O3' H3O2 LMT sing 256 n n 
O6' H6' LMT sing 257 n n 
C1 C2 LMT sing 258 n n 
C1 H12 LMT sing 259 n n 
C1 H11 LMT sing 260 n n 
C2 C3 LMT sing 261 n n 
C2 H22 LMT sing 262 n n 
C2 H21 LMT sing 263 n n 
C3 C4 LMT sing 264 n n 
C3 H32 LMT sing 265 n n 
C3 H31 LMT sing 266 n n 
C4 C5 LMT sing 267 n n 
C4 H42 LMT sing 268 n n 
C4 H41 LMT sing 269 n n 
C5 C6 LMT sing 270 n n 
C5 H52 LMT sing 271 n n 
C5 H51 LMT sing 272 n n 
C6 C7 LMT sing 273 n n 
C6 H62 LMT sing 274 n n 
C6 H61 LMT sing 275 n n 
C7 C8 LMT sing 276 n n 
C7 H72 LMT sing 277 n n 
C7 H71 LMT sing 278 n n 
C8 C9 LMT sing 279 n n 
C8 H82 LMT sing 280 n n 
C8 H81 LMT sing 281 n n 
C9 C10 LMT sing 282 n n 
C9 H92 LMT sing 283 n n 
C9 H91 LMT sing 284 n n 
C10 C11 LMT sing 285 n n 
C10 H102 LMT sing 286 n n 
C10 H101 LMT sing 287 n n 
C11 C12 LMT sing 288 n n 
C11 H112 LMT sing 289 n n 
C11 H111 LMT sing 290 n n 
C12 H123 LMT sing 291 n n 
C12 H122 LMT sing 292 n n 
C12 H121 LMT sing 293 n n 
#
_atom_sites.entry_id                     6ZG3 
_atom_sites.fract_transf_matrix[1][1]    0.010279 
_atom_sites.fract_transf_matrix[1][2]    0.002231 
_atom_sites.fract_transf_matrix[1][3]    0.002301 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009263 
_atom_sites.fract_transf_matrix[2][3]    0.000268 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009265 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 6 PEG A 1 301 10 PEG PEG . 
L 6 PEG B 1 301 1 PEG PEG . 
M 7 LMT C 1 501 501 LMT LMT . 
N 7 LMT C 1 502 701 LMT LMT . 
O 8 CIT C 1 503 801 CIT CIT . 
P 6 PEG C 1 504 2 PEG PEG . 
Q 6 PEG C 1 505 3 PEG PEG . 
R 6 PEG C 1 506 4 PEG PEG . 
S 7 LMT D 1 301 301 LMT LMT . 
T 6 PEG D 1 302 5 PEG PEG . 
U 6 PEG D 1 303 9 PEG PEG . 
V 6 PEG E 1 201 6 PEG PEG . 
W 7 LMT G 1 901 901 LMT LMT . 
X 7 LMT H 1 601 601 LMT LMT . 
Y 8 CIT H 1 602 701 CIT CIT . 
Z 7 LMT H 1 603 801 LMT LMT . 
AA 7 LMT I 1 301 301 LMT LMT . 
BA 6 PEG I 1 302 8 PEG PEG . 
CA 6 PEG J 1 201 7 PEG PEG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1B LMT . . . M 7 -64.961 103.704 67.406 1 159.89 ? C1B LMT 501 C 1 
HETATM 2 C C2B LMT . . . M 7 -64.839 104.791 66.296 1 163.06 ? C2B LMT 501 C 1 
HETATM 3 C C3B LMT . . . M 7 -64.84 106.206 66.94 1 168.11 ? C3B LMT 501 C 1 
HETATM 4 C C4B LMT . . . M 7 -64.549 106.123 68.478 1 166.91 ? C4B LMT 501 C 1 
HETATM 5 C C5B LMT . . . M 7 -63.463 105.021 68.732 1 165.32 ? C5B LMT 501 C 1 
HETATM 6 C C6B LMT . . . M 7 -63.084 104.949 70.217 1 155.64 ? C6B LMT 501 C 1 
HETATM 7 O O1B LMT . . . M 7 -65.2 102.437 66.848 1 151.68 ? O1B LMT 501 C 1 
HETATM 8 O O2B LMT . . . M 7 -63.663 104.569 65.575 1 154.31 ? O2B LMT 501 C 1 
HETATM 9 O O3B LMT . . . M 7 -65.996 106.911 66.643 1 165.64 ? O3B LMT 501 C 1 
HETATM 10 O O4' LMT . . . M 7 -64.152 107.361 68.988 1 155.13 ? O4' LMT 501 C 1 
HETATM 11 O O5B LMT . . . M 7 -63.822 103.722 68.24 1 161.91 ? O5B LMT 501 C 1 
HETATM 12 O O6B LMT . . . M 7 -62.434 103.767 70.489 1 142.04 ? O6B LMT 501 C 1 
HETATM 13 C C1' LMT . . . M 7 -64.335 99.54 66.413 1 131.28 ? C1' LMT 501 C 1 
HETATM 14 C C2' LMT . . . M 7 -65.548 99.983 65.56 1 134.89 ? C2' LMT 501 C 1 
HETATM 15 C C3' LMT . . . M 7 -66.651 100.577 66.499 1 136.83 ? C3' LMT 501 C 1 
HETATM 16 C C4' LMT . . . M 7 -66.012 101.493 67.543 1 142.38 ? C4' LMT 501 C 1 
HETATM 17 C C5' LMT . . . M 7 -65.112 100.533 68.386 1 144.92 ? C5' LMT 501 C 1 
HETATM 18 C C6' LMT . . . M 7 -65.64 100.24 69.773 1 138.53 ? C6' LMT 501 C 1 
HETATM 19 O O1' LMT . . . M 7 -63.777 98.387 65.93 1 116.52 ? O1' LMT 501 C 1 
HETATM 20 O O2' LMT . . . M 7 -65.142 100.951 64.653 1 134.73 ? O2' LMT 501 C 1 
HETATM 21 O O3' LMT . . . M 7 -67.325 99.579 67.144 1 129.01 ? O3' LMT 501 C 1 
HETATM 22 O O5' LMT . . . M 7 -64.824 99.302 67.729 1 139.2 ? O5' LMT 501 C 1 
HETATM 23 O O6' LMT . . . M 7 -64.572 99.723 70.483 1 132.42 ? O6' LMT 501 C 1 
HETATM 24 C C1 LMT . . . M 7 -63.303 98.553 64.631 1 107.54 ? C1 LMT 501 C 1 
HETATM 25 C C2 LMT . . . M 7 -63.375 97.218 63.966 1 100.15 ? C2 LMT 501 C 1 
HETATM 26 C C3 LMT . . . M 7 -62.146 96.388 64.069 1 94.74 ? C3 LMT 501 C 1 
HETATM 27 C C4 LMT . . . M 7 -61.23 97.05 63.08 1 85.8 ? C4 LMT 501 C 1 
HETATM 28 C C5 LMT . . . M 7 -60.371 96.122 62.31 1 81.24 ? C5 LMT 501 C 1 
HETATM 29 C C6 LMT . . . M 7 -59.314 96.925 61.624 1 87.63 ? C6 LMT 501 C 1 
HETATM 30 C C7 LMT . . . M 7 -58.114 96.099 61.318 1 89.93 ? C7 LMT 501 C 1 
HETATM 31 C C8 LMT . . . M 7 -57.749 96.368 59.905 1 98.49 ? C8 LMT 501 C 1 
HETATM 32 C C9 LMT . . . M 7 -56.828 95.384 59.248 1 101.02 ? C9 LMT 501 C 1 
#
_model_server_stats.io_time_ms              54 
_model_server_stats.parse_time_ms           36 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           32 
#