data_6ZG3 # _model_server_result.job_id AsUx-0kKDflIY8-C_sUYKA _model_server_result.datetime_utc '2024-12-21 14:30:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zg3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":503}' # _entry.id 6ZG3 # _exptl.entry_id 6ZG3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 88.997 _cell.angle_beta 102.271 _cell.angle_gamma 102.244 _cell.entry_id 6ZG3 _cell.length_a 97.29 _cell.length_b 110.47 _cell.length_c 110.5 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZG3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA pentameric 5 author_and_software_defined_assembly 1 PISA pentameric 5 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,G,H,I,K,V,W,X,Y,Z,AA,BA 1 1 B,C,D,F,J,L,M,N,O,P,Q,R,S,T,U,CA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 O N N ? 8 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 22 E CYS 22 1_555 E SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 E SG CYS 50 E CYS 50 1_555 E SG CYS 106 E CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 J SG CYS 22 J CYS 22 1_555 J SG CYS 96 J CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 J SG CYS 50 J CYS 50 1_555 J SG CYS 106 J CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 6ZG3 _atom_sites.fract_transf_matrix[1][1] 0.010279 _atom_sites.fract_transf_matrix[1][2] 0.002231 _atom_sites.fract_transf_matrix[1][3] 0.002301 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009263 _atom_sites.fract_transf_matrix[2][3] 0.000268 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009265 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 6 PEG A 1 301 10 PEG PEG . L 6 PEG B 1 301 1 PEG PEG . M 7 LMT C 1 501 501 LMT LMT . N 7 LMT C 1 502 701 LMT LMT . O 8 CIT C 1 503 801 CIT CIT . P 6 PEG C 1 504 2 PEG PEG . Q 6 PEG C 1 505 3 PEG PEG . R 6 PEG C 1 506 4 PEG PEG . S 7 LMT D 1 301 301 LMT LMT . T 6 PEG D 1 302 5 PEG PEG . U 6 PEG D 1 303 9 PEG PEG . V 6 PEG E 1 201 6 PEG PEG . W 7 LMT G 1 901 901 LMT LMT . X 7 LMT H 1 601 601 LMT LMT . Y 8 CIT H 1 602 701 CIT CIT . Z 7 LMT H 1 603 801 LMT LMT . AA 7 LMT I 1 301 301 LMT LMT . BA 6 PEG I 1 302 8 PEG PEG . CA 6 PEG J 1 201 7 PEG PEG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . O 8 -66.142 83.982 45.71 1 140.67 ? C1 CIT 503 C 1 HETATM 2 O O1 CIT . . . O 8 -66.856 82.989 45.411 1 142.71 ? O1 CIT 503 C 1 HETATM 3 O O2 CIT . . . O 8 -66.134 84.4 46.893 1 134.18 ? O2 CIT 503 C 1 HETATM 4 C C2 CIT . . . O 8 -65.28 84.671 44.675 1 141.09 ? C2 CIT 503 C 1 HETATM 5 C C3 CIT . . . O 8 -63.793 84.581 45.061 1 148.39 ? C3 CIT 503 C 1 HETATM 6 O O7 CIT . . . O 8 -63.646 84.141 46.447 1 149.96 ? O7 CIT 503 C 1 HETATM 7 C C4 CIT . . . O 8 -63.143 85.959 44.882 1 132.63 ? C4 CIT 503 C 1 HETATM 8 C C5 CIT . . . O 8 -62.508 86.496 46.143 1 135.01 ? C5 CIT 503 C 1 HETATM 9 O O3 CIT . . . O 8 -62.563 87.721 46.382 1 191.56 ? O3 CIT 503 C 1 HETATM 10 O O4 CIT . . . O 8 -61.916 85.737 46.952 1 142.62 ? O4 CIT 503 C 1 HETATM 11 C C6 CIT . . . O 8 -63.084 83.583 44.119 1 148.54 ? C6 CIT 503 C 1 HETATM 12 O O5 CIT . . . O 8 -63.637 83.191 43.044 1 136.68 ? O5 CIT 503 C 1 HETATM 13 O O6 CIT . . . O 8 -61.925 83.154 44.405 1 148.94 ? O6 CIT 503 C 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #