data_6ZG9 # _model_server_result.job_id V5_xsBX-MDLWdL2EgkA3fQ _model_server_result.datetime_utc '2024-11-26 13:15:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zg9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 6ZG9 # _exptl.entry_id 6ZG9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 333.4 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-fluoranyl-5-methyl-3-[1-(oxan-4-yl)piperidin-4-yl]-1~{H}-benzimidazol-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZG9 _cell.length_a 62.363 _cell.length_b 66.571 _cell.length_c 153.102 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZG9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 79 A CYS 98 1_555 A SG CYS 159 A CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf2 A SG CYS 398 A CYS 391 1_555 A SG CYS 401 A CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C18 H24 F N3 O2' _chem_comp.formula_weight 333.4 _chem_comp.id QK2 _chem_comp.mon_nstd_flag . _chem_comp.name 7-fluoranyl-5-methyl-3-[1-(oxan-4-yl)piperidin-4-yl]-1~{H}-benzimidazol-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 O1 QK2 sing 367 n n C15 C14 QK2 sing 368 n n O1 C16 QK2 sing 369 n n C14 C13 QK2 sing 370 n n C16 C17 QK2 sing 371 n n C13 C17 QK2 sing 372 n n C13 N3 QK2 sing 373 n n N3 C11 QK2 sing 374 n n N3 C10 QK2 sing 375 n n C18 C3 QK2 sing 376 n n C11 C12 QK2 sing 377 n n C10 C9 QK2 sing 378 n n C12 C8 QK2 sing 379 n n C3 C2 QK2 doub 380 n y C3 C4 QK2 sing 381 n y C2 C1 QK2 sing 382 n y C9 C8 QK2 sing 383 n n C8 N2 QK2 sing 384 n n C4 C5 QK2 doub 385 n y C1 N2 QK2 sing 386 n n C1 C6 QK2 doub 387 n y N2 C7 QK2 sing 388 n n C5 C6 QK2 sing 389 n y C5 F1 QK2 sing 390 n n C6 N1 QK2 sing 391 n n C7 N1 QK2 sing 392 n n C7 O2 QK2 doub 393 n n N1 H1 QK2 sing 394 n n C4 H3 QK2 sing 395 n n C8 H4 QK2 sing 396 n n C10 H5 QK2 sing 397 n n C10 H6 QK2 sing 398 n n C13 H7 QK2 sing 399 n n C15 H8 QK2 sing 400 n n C15 H9 QK2 sing 401 n n C17 H10 QK2 sing 402 n n C17 H11 QK2 sing 403 n n C11 H12 QK2 sing 404 n n C11 H13 QK2 sing 405 n n C12 H14 QK2 sing 406 n n C12 H15 QK2 sing 407 n n C14 H16 QK2 sing 408 n n C14 H17 QK2 sing 409 n n C16 H18 QK2 sing 410 n n C16 H19 QK2 sing 411 n n C18 H20 QK2 sing 412 n n C18 H21 QK2 sing 413 n n C18 H22 QK2 sing 414 n n C2 H23 QK2 sing 415 n n C9 H24 QK2 sing 416 n n C9 H25 QK2 sing 417 n n # _atom_sites.entry_id 6ZG9 _atom_sites.fract_transf_matrix[1][1] 0.016035 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015022 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006532 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 QK2 A 1 1201 1201 QK2 LIG . C 3 EPE A 1 1202 1301 EPE EPE . D 4 OLA A 1 1203 1 OLA OLA . E 4 OLA A 1 1204 2 OLA OLA . F 4 OLA A 1 1205 3 OLA OLA . G 4 OLA A 1 1206 4 OLA OLA . H 4 OLA A 1 1207 5 OLA OLA . I 4 OLA A 1 1208 6 OLA OLA . J 5 PO4 A 1 1209 1 PO4 PO4 . K 6 HOH A 1 1301 4 HOH HOH . K 6 HOH A 2 1302 17 HOH HOH . K 6 HOH A 3 1303 2 HOH HOH . K 6 HOH A 4 1304 9 HOH HOH . K 6 HOH A 5 1305 10 HOH HOH . K 6 HOH A 6 1306 22 HOH HOH . K 6 HOH A 7 1307 25 HOH HOH . K 6 HOH A 8 1308 30 HOH HOH . K 6 HOH A 9 1309 15 HOH HOH . K 6 HOH A 10 1310 5 HOH HOH . K 6 HOH A 11 1311 19 HOH HOH . K 6 HOH A 12 1312 11 HOH HOH . K 6 HOH A 13 1313 20 HOH HOH . K 6 HOH A 14 1314 16 HOH HOH . K 6 HOH A 15 1315 7 HOH HOH . K 6 HOH A 16 1316 14 HOH HOH . K 6 HOH A 17 1317 29 HOH HOH . K 6 HOH A 18 1318 18 HOH HOH . K 6 HOH A 19 1319 21 HOH HOH . K 6 HOH A 20 1320 28 HOH HOH . K 6 HOH A 21 1321 23 HOH HOH . K 6 HOH A 22 1322 26 HOH HOH . K 6 HOH A 23 1323 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 QK2 . . . B 2 -7.569 9.638 10.562 1 21.7 ? N1 QK2 1201 A 1 HETATM 2 N N3 QK2 . . . B 2 -9.269 13.151 5.283 1 30.19 ? N3 QK2 1201 A 1 HETATM 3 C C4 QK2 . . . B 2 -5.594 7.486 8.212 1 22.28 ? C4 QK2 1201 A 1 HETATM 4 C C5 QK2 . . . B 2 -6.083 7.875 9.449 1 24.1 ? C5 QK2 1201 A 1 HETATM 5 C C6 QK2 . . . B 2 -6.934 8.989 9.516 1 23.55 ? C6 QK2 1201 A 1 HETATM 6 C C7 QK2 . . . B 2 -8.281 10.714 10.1 1 22.7 ? C7 QK2 1201 A 1 HETATM 7 C C8 QK2 . . . B 2 -8.779 11.712 7.813 1 26.03 ? C8 QK2 1201 A 1 HETATM 8 C C10 QK2 . . . B 2 -8.487 13.783 6.421 1 28.69 ? C10 QK2 1201 A 1 HETATM 9 C C13 QK2 . . . B 2 -10.009 14.135 4.454 1 36.72 ? C13 QK2 1201 A 1 HETATM 10 C C15 QK2 . . . B 2 -10.262 15.297 2.25 1 41.31 ? C15 QK2 1201 A 1 HETATM 11 C C17 QK2 . . . B 2 -10.37 15.483 5.09 1 40.17 ? C17 QK2 1201 A 1 HETATM 12 C C1 QK2 . . . B 2 -7.292 9.668 8.348 1 23.74 ? C1 QK2 1201 A 1 HETATM 13 C C11 QK2 . . . B 2 -10.217 12.097 5.782 1 28.16 ? C11 QK2 1201 A 1 HETATM 14 C C12 QK2 . . . B 2 -9.539 11.056 6.658 1 27.17 ? C12 QK2 1201 A 1 HETATM 15 C C14 QK2 . . . B 2 -9.441 14.317 3.051 1 39.57 ? C14 QK2 1201 A 1 HETATM 16 C C16 QK2 . . . B 2 -11.085 16.415 4.136 1 41.3 ? C16 QK2 1201 A 1 HETATM 17 C C18 QK2 . . . B 2 -5.374 7.729 5.728 1 9.75 ? C18 QK2 1201 A 1 HETATM 18 C C2 QK2 . . . B 2 -6.801 9.265 7.116 1 19 ? C2 QK2 1201 A 1 HETATM 19 C C3 QK2 . . . B 2 -5.93 8.183 7.051 1 16.21 ? C3 QK2 1201 A 1 HETATM 20 C C9 QK2 . . . B 2 -7.792 12.764 7.308 1 26.5 ? C9 QK2 1201 A 1 HETATM 21 F F1 QK2 . . . B 2 -5.719 7.195 10.551 1 25.75 ? F1 QK2 1201 A 1 HETATM 22 N N2 QK2 . . . B 2 -8.141 10.718 8.713 1 25.24 ? N2 QK2 1201 A 1 HETATM 23 O O1 QK2 . . . B 2 -10.354 16.552 2.921 1 41.45 ? O1 QK2 1201 A 1 HETATM 24 O O2 QK2 . . . B 2 -8.933 11.51 10.771 1 20.84 ? O2 QK2 1201 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #