data_6ZGC # _model_server_result.job_id SR3D3ZdnfMscQE0HeE2PnQ _model_server_result.datetime_utc '2024-11-24 18:53:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zgc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 6ZGC # _exptl.entry_id 6ZGC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 542.026 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(5-CHLORO-1,3-BENZODIOXOL-4-YL)-7-[2-(4-METHYLPIPERAZIN-1-YL)ETHOXY]-5-(TETRAHYDRO-2H-PYRAN-4-YLOXY)QUINAZOLIN-4-AMINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.262 _cell.angle_gamma 90 _cell.entry_id 6ZGC _cell.length_a 84.62 _cell.length_b 101.69 _cell.length_c 180.126 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZGC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y (x,y,-x+z)' _symmetry.space_group_name_H-M 'I 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,J,CA 1 1 B,K,L,M,N,O,P,DA 2 1 C,Q,R,S,T,U,V,EA 3 1 D,W,X,Y,Z,AA,BA,FA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 K N N ? 2 Q N N ? 2 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 197 A CYS 395 1_555 C SG CYS 197 C CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 197 B CYS 395 1_555 D SG CYS 197 D CYS 395 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 F K K . A K 502 1_555 G O1 PO4 . A PO4 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.255 ? metalc ? metalc2 L K K . B K 502 1_555 N O4 PO4 . B PO4 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? metalc ? metalc3 L K K . B K 502 1_555 DA O HOH . B HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.497 ? metalc ? metalc4 R K K . C K 502 1_555 T O2 PO4 . C PO4 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.328 ? metalc ? metalc5 X K K . D K 502 1_555 Z O2 PO4 . D PO4 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.431 ? # _chem_comp.formula 'C27 H32 Cl N5 O5' _chem_comp.formula_weight 542.026 _chem_comp.id H8H _chem_comp.mon_nstd_flag . _chem_comp.name N-(5-CHLORO-1,3-BENZODIOXOL-4-YL)-7-[2-(4-METHYLPIPERAZIN-1-YL)ETHOXY]-5-(TETRAHYDRO-2H-PYRAN-4-YLOXY)QUINAZOLIN-4-AMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SARACATINIB # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 H8H sing 129 n n C1 H11 H8H sing 130 n n C1 H12 H8H sing 131 n n C1 H13A H8H sing 132 n n N2 C3 H8H sing 133 n n N2 C38 H8H sing 134 n n C3 C4 H8H sing 135 n n C3 H31 H8H sing 136 n n C3 H32 H8H sing 137 n n C4 N5 H8H sing 138 n n C4 H41 H8H sing 139 n n C4 H42 H8H sing 140 n n N5 C6 H8H sing 141 n n N5 C37 H8H sing 142 n n C6 C7 H8H sing 143 n n C6 H61 H8H sing 144 n n C6 H62 H8H sing 145 n n C7 O8 H8H sing 146 n n C7 H71 H8H sing 147 n n C7 H72 H8H sing 148 n n O8 C9 H8H sing 149 n n C9 C10 H8H sing 150 n y C9 C36 H8H doub 151 n y C10 C11 H8H doub 152 n y C10 H10 H8H sing 153 n n C11 O12 H8H sing 154 n n C11 C19 H8H sing 155 n y O12 C13 H8H sing 156 n n C13 C14 H8H sing 157 n n C13 C18 H8H sing 158 n n C13 H13 H8H sing 159 n n C14 C15 H8H sing 160 n n C14 H141 H8H sing 161 n n C14 H142 H8H sing 162 n n C15 O16 H8H sing 163 n n C15 H151 H8H sing 164 n n C15 H152 H8H sing 165 n n O16 C17 H8H sing 166 n n C17 C18 H8H sing 167 n n C17 H171 H8H sing 168 n n C17 H172 H8H sing 169 n n C18 H181 H8H sing 170 n n C18 H182 H8H sing 171 n n C19 C20 H8H doub 172 n y C19 C35 H8H sing 173 n y C20 N21 H8H sing 174 n n C20 N32 H8H sing 175 n y N21 C22 H8H sing 176 n n N21 HN21 H8H sing 177 n n C22 C23 H8H sing 178 n y C22 C30 H8H doub 179 n y C23 O24 H8H sing 180 n n C23 C27 H8H doub 181 n y O24 C25 H8H sing 182 n n C25 O26 H8H sing 183 n n C25 H251 H8H sing 184 n n C25 H252 H8H sing 185 n n O26 C27 H8H sing 186 n n C27 C28 H8H sing 187 n y C28 C29 H8H doub 188 n y C28 H28 H8H sing 189 n n C29 C30 H8H sing 190 n y C29 H29 H8H sing 191 n n C30 CL3 H8H sing 192 n n N32 C33 H8H doub 193 n y C33 N34 H8H sing 194 n y C33 H33 H8H sing 195 n n N34 C35 H8H doub 196 n y C35 C36 H8H sing 197 n y C36 H36 H8H sing 198 n n C37 C38 H8H sing 199 n n C37 H371 H8H sing 200 n n C37 H372 H8H sing 201 n n C38 H381 H8H sing 202 n n C38 H382 H8H sing 203 n n # _atom_sites.entry_id 6ZGC _atom_sites.fract_transf_matrix[1][1] 0.011818 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001088 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009834 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005575 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 H8H A 1 501 1 H8H SAC . F 3 K A 1 502 5 K K . G 4 PO4 A 1 503 3 PO4 PO4 . H 4 PO4 A 1 504 4 PO4 PO4 . I 4 PO4 A 1 505 11 PO4 PO4 . J 4 PO4 A 1 506 13 PO4 PO4 . K 2 H8H B 1 501 2 H8H SAC . L 3 K B 1 502 7 K K . M 4 PO4 B 1 503 1 PO4 PO4 . N 4 PO4 B 1 504 2 PO4 PO4 . O 4 PO4 B 1 505 5 PO4 PO4 . P 4 PO4 B 1 506 14 PO4 PO4 . Q 2 H8H C 1 501 4 H8H SAC . R 3 K C 1 502 6 K K . S 4 PO4 C 1 503 6 PO4 PO4 . T 4 PO4 C 1 504 10 PO4 PO4 . U 4 PO4 C 1 505 12 PO4 PO4 . V 4 PO4 C 1 506 15 PO4 PO4 . W 2 H8H D 1 501 3 H8H SAC . X 3 K D 1 502 8 K K . Y 4 PO4 D 1 503 7 PO4 PO4 . Z 4 PO4 D 1 504 8 PO4 PO4 . AA 4 PO4 D 1 505 9 PO4 PO4 . BA 4 PO4 D 1 506 16 PO4 PO4 . CA 5 HOH A 1 601 7 HOH HOH . CA 5 HOH A 2 602 5 HOH HOH . CA 5 HOH A 3 603 6 HOH HOH . CA 5 HOH A 4 604 4 HOH HOH . CA 5 HOH A 5 605 1 HOH HOH . CA 5 HOH A 6 606 8 HOH HOH . CA 5 HOH A 7 607 21 HOH HOH . CA 5 HOH A 8 608 9 HOH HOH . CA 5 HOH A 9 609 23 HOH HOH . CA 5 HOH A 10 610 22 HOH HOH . DA 5 HOH B 1 601 11 HOH HOH . DA 5 HOH B 2 602 14 HOH HOH . DA 5 HOH B 3 603 26 HOH HOH . DA 5 HOH B 4 604 25 HOH HOH . EA 5 HOH C 1 601 15 HOH HOH . FA 5 HOH D 1 601 3 HOH HOH . FA 5 HOH D 2 602 19 HOH HOH . FA 5 HOH D 3 603 18 HOH HOH . FA 5 HOH D 4 604 24 HOH HOH . FA 5 HOH D 5 605 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 H8H . . . E 2 181.623 -35.589 12.735 1 79.6 ? C1 H8H 501 A 1 HETATM 2 N N2 H8H . . . E 2 181.46 -36.869 12.83 1 78.49 ? N2 H8H 501 A 1 HETATM 3 C C3 H8H . . . E 2 181.1 -37.195 14.136 1 68.83 ? C3 H8H 501 A 1 HETATM 4 C C4 H8H . . . E 2 180.843 -38.625 14.191 1 57.11 ? C4 H8H 501 A 1 HETATM 5 N N5 H8H . . . E 2 181.954 -39.362 13.998 1 66.63 ? N5 H8H 501 A 1 HETATM 6 C C6 H8H . . . E 2 182.676 -39.35 14.999 1 62.69 ? C6 H8H 501 A 1 HETATM 7 C C7 H8H . . . E 2 182.078 -40.153 16.232 1 46.14 ? C7 H8H 501 A 1 HETATM 8 O O8 H8H . . . E 2 181.624 -39.178 17.171 1 50.23 ? O8 H8H 501 A 1 HETATM 9 C C9 H8H . . . E 2 181.77 -39.485 18.543 1 47.89 ? C9 H8H 501 A 1 HETATM 10 C C10 H8H . . . E 2 181.229 -38.531 19.532 1 49.9 ? C10 H8H 501 A 1 HETATM 11 C C11 H8H . . . E 2 181.345 -38.796 20.876 1 44.96 ? C11 H8H 501 A 1 HETATM 12 O O12 H8H . . . E 2 180.844 -37.903 21.861 1 50.22 ? O12 H8H 501 A 1 HETATM 13 C C13 H8H . . . E 2 179.66 -37.104 21.361 1 53.6 ? C13 H8H 501 A 1 HETATM 14 C C14 H8H . . . E 2 178.464 -37.93 21.466 1 51.77 ? C14 H8H 501 A 1 HETATM 15 C C15 H8H . . . E 2 177.186 -37.127 21.244 1 55.68 ? C15 H8H 501 A 1 HETATM 16 O O16 H8H . . . E 2 177.122 -35.984 22.132 1 67.87 ? O16 H8H 501 A 1 HETATM 17 C C17 H8H . . . E 2 178.28 -35.131 21.975 1 59.28 ? C17 H8H 501 A 1 HETATM 18 C C18 H8H . . . E 2 179.588 -35.902 22.168 1 52.29 ? C18 H8H 501 A 1 HETATM 19 C C19 H8H . . . E 2 181.999 -39.989 21.312 1 44.64 ? C19 H8H 501 A 1 HETATM 20 C C20 H8H . . . E 2 182.142 -40.288 22.719 1 46.5 ? C20 H8H 501 A 1 HETATM 21 N N21 H8H . . . E 2 181.595 -39.329 23.696 1 38.88 ? N21 H8H 501 A 1 HETATM 22 C C22 H8H . . . E 2 181.685 -39.487 25.102 1 37.69 ? C22 H8H 501 A 1 HETATM 23 C C23 H8H . . . E 2 182.967 -39.597 25.743 1 42.25 ? C23 H8H 501 A 1 HETATM 24 O O24 H8H . . . E 2 184.298 -39.597 25.219 1 48.04 ? O24 H8H 501 A 1 HETATM 25 C C25 H8H . . . E 2 185.167 -39.504 26.319 1 46.34 ? C25 H8H 501 A 1 HETATM 26 O O26 H8H . . . E 2 184.413 -39.832 27.467 1 43.94 ? O26 H8H 501 A 1 HETATM 27 C C27 H8H . . . E 2 183.046 -39.739 27.106 1 44.32 ? C27 H8H 501 A 1 HETATM 28 C C28 H8H . . . E 2 181.85 -39.774 27.896 1 38.9 ? C28 H8H 501 A 1 HETATM 29 C C29 H8H . . . E 2 180.599 -39.662 27.268 1 42.05 ? C29 H8H 501 A 1 HETATM 30 C C30 H8H . . . E 2 180.52 -39.517 25.874 1 43.64 ? C30 H8H 501 A 1 HETATM 31 CL CL3 H8H . . . E 2 179.019 -39.384 25.138 1 52.85 ? CL3 H8H 501 A 1 HETATM 32 N N32 H8H . . . E 2 182.774 -41.444 23.102 1 40.11 ? N32 H8H 501 A 1 HETATM 33 C C33 H8H . . . E 2 183.254 -42.303 22.18 1 39.46 ? C33 H8H 501 A 1 HETATM 34 N N34 H8H . . . E 2 183.158 -42.08 20.865 1 39.3 ? N34 H8H 501 A 1 HETATM 35 C C35 H8H . . . E 2 182.512 -40.887 20.38 1 39.77 ? C35 H8H 501 A 1 HETATM 36 C C36 H8H . . . E 2 182.388 -40.618 18.956 1 39.84 ? C36 H8H 501 A 1 HETATM 37 C C37 H8H . . . E 2 182.759 -38.919 12.888 1 72.85 ? C37 H8H 501 A 1 HETATM 38 C C38 H8H . . . E 2 182.551 -37.482 12.375 1 74.04 ? C38 H8H 501 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 38 #