data_6ZGC
#
_model_server_result.job_id            oYYu1nUVX1ltzGDWSMUAXQ 
_model_server_result.datetime_utc      '2024-11-24 18:27:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zgc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":501}' 
#
_entry.id    6ZGC 
#
_exptl.entry_id    6ZGC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              542.026 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-(5-CHLORO-1,3-BENZODIOXOL-4-YL)-7-[2-(4-METHYLPIPERAZIN-1-YL)ETHOXY]-5-(TETRAHYDRO-2H-PYRAN-4-YLOXY)QUINAZOLIN-4-AMINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.262 
_cell.angle_gamma         90 
_cell.entry_id            6ZGC 
_cell.length_a            84.62 
_cell.length_b            101.69 
_cell.length_c            180.126 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZGC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y (x,y,-x+z)' 
_symmetry.space_group_name_H-M     'I 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,I,J,CA 1 1 
B,K,L,M,N,O,P,DA 2 1 
C,Q,R,S,T,U,V,EA 3 1 
D,W,X,Y,Z,AA,BA,FA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 K N N 
? 2 Q N N 
? 2 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 197 A CYS 395 1_555 C SG CYS 197 C CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 B SG CYS 197 B CYS 395 1_555 D SG CYS 197 D CYS 395 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc1 F K K . A K 502 1_555 G O1 PO4 . A PO4 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.255 ? 
metalc ? metalc2 L K K . B K 502 1_555 N O4 PO4 . B PO4 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? 
metalc ? metalc3 L K K . B K 502 1_555 DA O HOH . B HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.497 ? 
metalc ? metalc4 R K K . C K 502 1_555 T O2 PO4 . C PO4 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.328 ? 
metalc ? metalc5 X K K . D K 502 1_555 Z O2 PO4 . D PO4 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.431 ? 
#
_chem_comp.formula           'C27 H32 Cl N5 O5' 
_chem_comp.formula_weight    542.026 
_chem_comp.id                H8H 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-(5-CHLORO-1,3-BENZODIOXOL-4-YL)-7-[2-(4-METHYLPIPERAZIN-1-YL)ETHOXY]-5-(TETRAHYDRO-2H-PYRAN-4-YLOXY)QUINAZOLIN-4-AMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     SARACATINIB 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N2 H8H sing 129 n n 
C1 H11 H8H sing 130 n n 
C1 H12 H8H sing 131 n n 
C1 H13A H8H sing 132 n n 
N2 C3 H8H sing 133 n n 
N2 C38 H8H sing 134 n n 
C3 C4 H8H sing 135 n n 
C3 H31 H8H sing 136 n n 
C3 H32 H8H sing 137 n n 
C4 N5 H8H sing 138 n n 
C4 H41 H8H sing 139 n n 
C4 H42 H8H sing 140 n n 
N5 C6 H8H sing 141 n n 
N5 C37 H8H sing 142 n n 
C6 C7 H8H sing 143 n n 
C6 H61 H8H sing 144 n n 
C6 H62 H8H sing 145 n n 
C7 O8 H8H sing 146 n n 
C7 H71 H8H sing 147 n n 
C7 H72 H8H sing 148 n n 
O8 C9 H8H sing 149 n n 
C9 C10 H8H sing 150 n y 
C9 C36 H8H doub 151 n y 
C10 C11 H8H doub 152 n y 
C10 H10 H8H sing 153 n n 
C11 O12 H8H sing 154 n n 
C11 C19 H8H sing 155 n y 
O12 C13 H8H sing 156 n n 
C13 C14 H8H sing 157 n n 
C13 C18 H8H sing 158 n n 
C13 H13 H8H sing 159 n n 
C14 C15 H8H sing 160 n n 
C14 H141 H8H sing 161 n n 
C14 H142 H8H sing 162 n n 
C15 O16 H8H sing 163 n n 
C15 H151 H8H sing 164 n n 
C15 H152 H8H sing 165 n n 
O16 C17 H8H sing 166 n n 
C17 C18 H8H sing 167 n n 
C17 H171 H8H sing 168 n n 
C17 H172 H8H sing 169 n n 
C18 H181 H8H sing 170 n n 
C18 H182 H8H sing 171 n n 
C19 C20 H8H doub 172 n y 
C19 C35 H8H sing 173 n y 
C20 N21 H8H sing 174 n n 
C20 N32 H8H sing 175 n y 
N21 C22 H8H sing 176 n n 
N21 HN21 H8H sing 177 n n 
C22 C23 H8H sing 178 n y 
C22 C30 H8H doub 179 n y 
C23 O24 H8H sing 180 n n 
C23 C27 H8H doub 181 n y 
O24 C25 H8H sing 182 n n 
C25 O26 H8H sing 183 n n 
C25 H251 H8H sing 184 n n 
C25 H252 H8H sing 185 n n 
O26 C27 H8H sing 186 n n 
C27 C28 H8H sing 187 n y 
C28 C29 H8H doub 188 n y 
C28 H28 H8H sing 189 n n 
C29 C30 H8H sing 190 n y 
C29 H29 H8H sing 191 n n 
C30 CL3 H8H sing 192 n n 
N32 C33 H8H doub 193 n y 
C33 N34 H8H sing 194 n y 
C33 H33 H8H sing 195 n n 
N34 C35 H8H doub 196 n y 
C35 C36 H8H sing 197 n y 
C36 H36 H8H sing 198 n n 
C37 C38 H8H sing 199 n n 
C37 H371 H8H sing 200 n n 
C37 H372 H8H sing 201 n n 
C38 H381 H8H sing 202 n n 
C38 H382 H8H sing 203 n n 
#
_atom_sites.entry_id                     6ZGC 
_atom_sites.fract_transf_matrix[1][1]    0.011818 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001088 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009834 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005575 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 H8H A 1 501 1 H8H SAC . 
F 3 K A 1 502 5 K K . 
G 4 PO4 A 1 503 3 PO4 PO4 . 
H 4 PO4 A 1 504 4 PO4 PO4 . 
I 4 PO4 A 1 505 11 PO4 PO4 . 
J 4 PO4 A 1 506 13 PO4 PO4 . 
K 2 H8H B 1 501 2 H8H SAC . 
L 3 K B 1 502 7 K K . 
M 4 PO4 B 1 503 1 PO4 PO4 . 
N 4 PO4 B 1 504 2 PO4 PO4 . 
O 4 PO4 B 1 505 5 PO4 PO4 . 
P 4 PO4 B 1 506 14 PO4 PO4 . 
Q 2 H8H C 1 501 4 H8H SAC . 
R 3 K C 1 502 6 K K . 
S 4 PO4 C 1 503 6 PO4 PO4 . 
T 4 PO4 C 1 504 10 PO4 PO4 . 
U 4 PO4 C 1 505 12 PO4 PO4 . 
V 4 PO4 C 1 506 15 PO4 PO4 . 
W 2 H8H D 1 501 3 H8H SAC . 
X 3 K D 1 502 8 K K . 
Y 4 PO4 D 1 503 7 PO4 PO4 . 
Z 4 PO4 D 1 504 8 PO4 PO4 . 
AA 4 PO4 D 1 505 9 PO4 PO4 . 
BA 4 PO4 D 1 506 16 PO4 PO4 . 
CA 5 HOH A 1 601 7 HOH HOH . 
CA 5 HOH A 2 602 5 HOH HOH . 
CA 5 HOH A 3 603 6 HOH HOH . 
CA 5 HOH A 4 604 4 HOH HOH . 
CA 5 HOH A 5 605 1 HOH HOH . 
CA 5 HOH A 6 606 8 HOH HOH . 
CA 5 HOH A 7 607 21 HOH HOH . 
CA 5 HOH A 8 608 9 HOH HOH . 
CA 5 HOH A 9 609 23 HOH HOH . 
CA 5 HOH A 10 610 22 HOH HOH . 
DA 5 HOH B 1 601 11 HOH HOH . 
DA 5 HOH B 2 602 14 HOH HOH . 
DA 5 HOH B 3 603 26 HOH HOH . 
DA 5 HOH B 4 604 25 HOH HOH . 
EA 5 HOH C 1 601 15 HOH HOH . 
FA 5 HOH D 1 601 3 HOH HOH . 
FA 5 HOH D 2 602 19 HOH HOH . 
FA 5 HOH D 3 603 18 HOH HOH . 
FA 5 HOH D 4 604 24 HOH HOH . 
FA 5 HOH D 5 605 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 H8H . . . Q 2 140.683 -65.139 75.113 1 89.57 ? C1 H8H 501 C 1 
HETATM 2 N N2 H8H . . . Q 2 139.523 -64.576 75.018 1 91.55 ? N2 H8H 501 C 1 
HETATM 3 C C3 H8H . . . Q 2 139.421 -63.56 75.976 1 82.06 ? C3 H8H 501 C 1 
HETATM 4 C C4 H8H . . . Q 2 138.206 -62.77 75.816 1 76.39 ? C4 H8H 501 C 1 
HETATM 5 N N5 H8H . . . Q 2 138.074 -62.245 74.587 1 74.96 ? N5 H8H 501 C 1 
HETATM 6 C C6 H8H . . . Q 2 137.041 -61.58 74.486 1 69.03 ? C6 H8H 501 C 1 
HETATM 7 C C7 H8H . . . Q 2 137.245 -60.446 73.391 1 64.29 ? C7 H8H 501 C 1 
HETATM 8 O O8 H8H . . . Q 2 138.596 -59.985 73.497 1 66.93 ? O8 H8H 501 C 1 
HETATM 9 C C9 H8H . . . Q 2 138.887 -58.751 72.87 1 58.54 ? C9 H8H 501 C 1 
HETATM 10 C C10 H8H . . . Q 2 140.172 -58.083 73.148 1 59.02 ? C10 H8H 501 C 1 
HETATM 11 C C11 H8H . . . Q 2 140.472 -56.882 72.545 1 55.25 ? C11 H8H 501 C 1 
HETATM 12 O O12 H8H . . . Q 2 141.705 -56.231 72.815 1 58.74 ? O12 H8H 501 C 1 
HETATM 13 C C13 H8H . . . Q 2 142.829 -57.234 72.975 1 63.31 ? C13 H8H 501 C 1 
HETATM 14 C C14 H8H . . . Q 2 143.33 -57.579 71.647 1 57.91 ? C14 H8H 501 C 1 
HETATM 15 C C15 H8H . . . Q 2 144.747 -57.085 71.349 1 66.09 ? C15 H8H 501 C 1 
HETATM 16 O O16 H8H . . . Q 2 145.724 -57.321 72.401 1 73.94 ? O16 H8H 501 C 1 
HETATM 17 C C17 H8H . . . Q 2 145.161 -57.396 73.734 1 72.32 ? C17 H8H 501 C 1 
HETATM 18 C C18 H8H . . . Q 2 143.831 -56.646 73.841 1 65.31 ? C18 H8H 501 C 1 
HETATM 19 C C19 H8H . . . Q 2 139.533 -56.278 71.645 1 54.56 ? C19 H8H 501 C 1 
HETATM 20 C C20 H8H . . . Q 2 139.791 -55.015 70.983 1 57.56 ? C20 H8H 501 C 1 
HETATM 21 N N21 H8H . . . Q 2 141.06 -54.308 71.228 1 54.12 ? N21 H8H 501 C 1 
HETATM 22 C C22 H8H . . . Q 2 141.392 -53.09 70.582 1 52.92 ? C22 H8H 501 C 1 
HETATM 23 C C23 H8H . . . Q 2 140.603 -51.916 70.836 1 52.68 ? C23 H8H 501 C 1 
HETATM 24 O O24 H8H . . . Q 2 139.453 -51.709 71.661 1 56.02 ? O24 H8H 501 C 1 
HETATM 25 C C25 H8H . . . Q 2 139.114 -50.348 71.575 1 57.59 ? C25 H8H 501 C 1 
HETATM 26 O O26 H8H . . . Q 2 139.984 -49.744 70.64 1 57.73 ? O26 H8H 501 C 1 
HETATM 27 C C27 H8H . . . Q 2 140.915 -50.727 70.224 1 53.67 ? C27 H8H 501 C 1 
HETATM 28 C C28 H8H . . . Q 2 142.034 -50.653 69.332 1 44.45 ? C28 H8H 501 C 1 
HETATM 29 C C29 H8H . . . Q 2 142.807 -51.8 69.085 1 49.18 ? C29 H8H 501 C 1 
HETATM 30 C C30 H8H . . . Q 2 142.488 -53.014 69.71 1 53.4 ? C30 H8H 501 C 1 
HETATM 31 CL CL3 H8H . . . Q 2 143.431 -54.362 69.396 1 58.77 ? CL3 H8H 501 C 1 
HETATM 32 N N32 H8H . . . Q 2 138.849 -54.49 70.135 1 64.64 ? N32 H8H 501 C 1 
HETATM 33 C C33 H8H . . . Q 2 137.683 -55.131 69.901 1 59.55 ? C33 H8H 501 C 1 
HETATM 34 N N34 H8H . . . Q 2 137.384 -56.295 70.481 1 59.3 ? N34 H8H 501 C 1 
HETATM 35 C C35 H8H . . . Q 2 138.321 -56.913 71.387 1 59.14 ? C35 H8H 501 C 1 
HETATM 36 C C36 H8H . . . Q 2 138.003 -58.179 72.023 1 58.74 ? C36 H8H 501 C 1 
HETATM 37 C C37 H8H . . . Q 2 138.169 -63.232 73.554 1 74.04 ? C37 H8H 501 C 1 
HETATM 38 C C38 H8H . . . Q 2 139.308 -64.241 73.748 1 78.54 ? C38 H8H 501 C 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           38 
#