data_6ZHM # _model_server_result.job_id xVKeL7_N9aWd7sHd8sYU6w _model_server_result.datetime_utc '2024-11-12 20:28:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6zhm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 6ZHM # _exptl.entry_id 6ZHM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ZHM _cell.length_a 50.24 _cell.length_b 66.97 _cell.length_c 113.36 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZHM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 265 A CYS 245 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc2 A SG CYS 270 A CYS 250 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc3 A ND1 HIS 272 A HIS 252 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc4 A SG CYS 278 A CYS 258 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6ZHM _atom_sites.fract_transf_matrix[1][1] 0.019904 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014932 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP A 1 301 1 GDP GDP . C 3 ZN A 1 302 1 ZN ZN . D 4 PGE A 1 303 2 PGE PGE . E 5 EDO A 1 304 3 EDO EDO . F 5 EDO A 1 305 8 EDO EDO . G 6 HOH A 1 401 115 HOH HOH . G 6 HOH A 2 402 77 HOH HOH . G 6 HOH A 3 403 92 HOH HOH . G 6 HOH A 4 404 29 HOH HOH . G 6 HOH A 5 405 117 HOH HOH . G 6 HOH A 6 406 65 HOH HOH . G 6 HOH A 7 407 108 HOH HOH . G 6 HOH A 8 408 106 HOH HOH . G 6 HOH A 9 409 24 HOH HOH . G 6 HOH A 10 410 118 HOH HOH . G 6 HOH A 11 411 54 HOH HOH . G 6 HOH A 12 412 103 HOH HOH . G 6 HOH A 13 413 47 HOH HOH . G 6 HOH A 14 414 56 HOH HOH . G 6 HOH A 15 415 3 HOH HOH . G 6 HOH A 16 416 35 HOH HOH . G 6 HOH A 17 417 38 HOH HOH . G 6 HOH A 18 418 25 HOH HOH . G 6 HOH A 19 419 7 HOH HOH . G 6 HOH A 20 420 14 HOH HOH . G 6 HOH A 21 421 23 HOH HOH . G 6 HOH A 22 422 95 HOH HOH . G 6 HOH A 23 423 58 HOH HOH . G 6 HOH A 24 424 26 HOH HOH . G 6 HOH A 25 425 22 HOH HOH . G 6 HOH A 26 426 66 HOH HOH . G 6 HOH A 27 427 13 HOH HOH . G 6 HOH A 28 428 120 HOH HOH . G 6 HOH A 29 429 113 HOH HOH . G 6 HOH A 30 430 16 HOH HOH . G 6 HOH A 31 431 109 HOH HOH . G 6 HOH A 32 432 71 HOH HOH . G 6 HOH A 33 433 79 HOH HOH . G 6 HOH A 34 434 80 HOH HOH . G 6 HOH A 35 435 50 HOH HOH . G 6 HOH A 36 436 57 HOH HOH . G 6 HOH A 37 437 83 HOH HOH . G 6 HOH A 38 438 39 HOH HOH . G 6 HOH A 39 439 27 HOH HOH . G 6 HOH A 40 440 17 HOH HOH . G 6 HOH A 41 441 15 HOH HOH . G 6 HOH A 42 442 48 HOH HOH . G 6 HOH A 43 443 30 HOH HOH . G 6 HOH A 44 444 42 HOH HOH . G 6 HOH A 45 445 33 HOH HOH . G 6 HOH A 46 446 6 HOH HOH . G 6 HOH A 47 447 100 HOH HOH . G 6 HOH A 48 448 112 HOH HOH . G 6 HOH A 49 449 41 HOH HOH . G 6 HOH A 50 450 5 HOH HOH . G 6 HOH A 51 451 123 HOH HOH . G 6 HOH A 52 452 9 HOH HOH . G 6 HOH A 53 453 99 HOH HOH . G 6 HOH A 54 454 36 HOH HOH . G 6 HOH A 55 455 59 HOH HOH . G 6 HOH A 56 456 45 HOH HOH . G 6 HOH A 57 457 46 HOH HOH . G 6 HOH A 58 458 69 HOH HOH . G 6 HOH A 59 459 2 HOH HOH . G 6 HOH A 60 460 114 HOH HOH . G 6 HOH A 61 461 105 HOH HOH . G 6 HOH A 62 462 55 HOH HOH . G 6 HOH A 63 463 122 HOH HOH . G 6 HOH A 64 464 85 HOH HOH . G 6 HOH A 65 465 72 HOH HOH . G 6 HOH A 66 466 94 HOH HOH . G 6 HOH A 67 467 43 HOH HOH . G 6 HOH A 68 468 121 HOH HOH . G 6 HOH A 69 469 4 HOH HOH . G 6 HOH A 70 470 63 HOH HOH . G 6 HOH A 71 471 40 HOH HOH . G 6 HOH A 72 472 51 HOH HOH . G 6 HOH A 73 473 8 HOH HOH . G 6 HOH A 74 474 19 HOH HOH . G 6 HOH A 75 475 101 HOH HOH . G 6 HOH A 76 476 49 HOH HOH . G 6 HOH A 77 477 60 HOH HOH . G 6 HOH A 78 478 53 HOH HOH . G 6 HOH A 79 479 32 HOH HOH . G 6 HOH A 80 480 31 HOH HOH . G 6 HOH A 81 481 52 HOH HOH . G 6 HOH A 82 482 70 HOH HOH . G 6 HOH A 83 483 104 HOH HOH . G 6 HOH A 84 484 75 HOH HOH . G 6 HOH A 85 485 110 HOH HOH . G 6 HOH A 86 486 68 HOH HOH . G 6 HOH A 87 487 11 HOH HOH . G 6 HOH A 88 488 126 HOH HOH . G 6 HOH A 89 489 74 HOH HOH . G 6 HOH A 90 490 44 HOH HOH . G 6 HOH A 91 491 93 HOH HOH . G 6 HOH A 92 492 64 HOH HOH . G 6 HOH A 93 493 21 HOH HOH . G 6 HOH A 94 494 78 HOH HOH . G 6 HOH A 95 495 98 HOH HOH . G 6 HOH A 96 496 12 HOH HOH . G 6 HOH A 97 497 111 HOH HOH . G 6 HOH A 98 498 37 HOH HOH . G 6 HOH A 99 499 119 HOH HOH . G 6 HOH A 100 500 84 HOH HOH . G 6 HOH A 101 501 62 HOH HOH . G 6 HOH A 102 502 73 HOH HOH . G 6 HOH A 103 503 67 HOH HOH . G 6 HOH A 104 504 107 HOH HOH . G 6 HOH A 105 505 86 HOH HOH . G 6 HOH A 106 506 82 HOH HOH . G 6 HOH A 107 507 76 HOH HOH . G 6 HOH A 108 508 88 HOH HOH . G 6 HOH A 109 509 90 HOH HOH . G 6 HOH A 110 510 87 HOH HOH . G 6 HOH A 111 511 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 5 -12.29 -16.302 15.251 1 7.57 ? C1 EDO 305 A 1 HETATM 2 O O1 EDO . . . F 5 -13.423 -17.159 15.132 1 7.57 ? O1 EDO 305 A 1 HETATM 3 C C2 EDO . . . F 5 -12.253 -15.303 14.111 1 7.57 ? C2 EDO 305 A 1 HETATM 4 O O2 EDO . . . F 5 -10.906 -14.94 13.824 1 7.57 ? O2 EDO 305 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #