data_6ZHU
#
_model_server_result.job_id            Gge3C50SPShGmp8pjyQGww 
_model_server_result.datetime_utc      '2024-11-15 20:30:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zhu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1101}' 
#
_entry.id    6ZHU 
#
_exptl.entry_id    6ZHU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.448 
_cell.angle_gamma         90 
_cell.entry_id            6ZHU 
_cell.length_a            75.636 
_cell.length_b            152.408 
_cell.length_c            252.567 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZHU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I,J,Q 1 1 
B,F,K,L,R 2 1 
C,G,M,N,S 3 1 
D,H,O,P,T 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 K N N 
? 3 M N N 
? 3 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 95 B CYS 95 1_555 E SG CYS 600 A CYS 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf2 B SG CYS 95 F CYS 95 1_555 F SG CYS 600 E CYS 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf3 C SG CYS 95 D CYS 95 1_555 G SG CYS 600 C CYS 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
disulf ? disulf4 D SG CYS 95 H CYS 95 1_555 H SG CYS 600 G CYS 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc1 E OD2 ASP 544 A ASP 544 1_555 J MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc2 I O2G ATP . A ATP 1101 1_555 J MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? 
metalc ? metalc3 I O1B ATP . A ATP 1101 1_555 J MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? 
metalc ? metalc4 I O2A ATP . A ATP 1101 1_555 J MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? 
metalc ? metalc5 J MG MG . A MG 1102 1_555 Q O HOH . A HOH 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc6 J MG MG . A MG 1102 1_555 Q O HOH . A HOH 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? 
metalc ? metalc7 F OD2 ASP 544 E ASP 544 1_555 L MG MG . E MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
metalc ? metalc8 K O2G ATP . E ATP 1101 1_555 L MG MG . E MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc9 K O1B ATP . E ATP 1101 1_555 L MG MG . E MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc10 K O1A ATP . E ATP 1101 1_555 L MG MG . E MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? 
metalc ? metalc11 L MG MG . E MG 1102 1_555 R O HOH . E HOH 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.787 ? 
metalc ? metalc12 G OD2 ASP 544 C ASP 544 1_555 N MG MG . C MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.968 ? 
metalc ? metalc13 M O2G ATP . C ATP 1101 1_555 N MG MG . C MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc14 M O2B ATP . C ATP 1101 1_555 N MG MG . C MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? 
metalc ? metalc15 M O2A ATP . C ATP 1101 1_555 N MG MG . C MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? 
metalc ? metalc16 N MG MG . C MG 1102 1_555 S O HOH . C HOH 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.754 ? 
metalc ? metalc17 N MG MG . C MG 1102 1_555 S O HOH . C HOH 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc18 H OD2 ASP 544 G ASP 544 1_555 P MG MG . G MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
metalc ? metalc19 O O1G ATP . G ATP 1101 1_555 P MG MG . G MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? 
metalc ? metalc20 O O2B ATP . G ATP 1101 1_555 P MG MG . G MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? 
metalc ? metalc21 O O2A ATP . G ATP 1101 1_555 P MG MG . G MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc22 P MG MG . G MG 1102 1_555 T O HOH . G HOH 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.793 ? 
metalc ? metalc23 P MG MG . G MG 1102 1_555 T O HOH . G HOH 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     6ZHU 
_atom_sites.fract_transf_matrix[1][1]    0.013221 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000103 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006561 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003959 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 ATP A 1 1101 1101 ATP ATP . 
J 4 MG A 1 1102 1102 MG MG . 
K 3 ATP E 1 1101 1101 ATP ATP . 
L 4 MG E 1 1102 1102 MG MG . 
M 3 ATP C 1 1101 1101 ATP ATP . 
N 4 MG C 1 1102 1102 MG MG . 
O 3 ATP G 1 1101 1101 ATP ATP . 
P 4 MG G 1 1102 1102 MG MG . 
Q 5 HOH A 1 1201 4 HOH HOH . 
Q 5 HOH A 2 1202 1 HOH HOH . 
Q 5 HOH A 3 1203 3 HOH HOH . 
R 5 HOH E 1 1201 6 HOH HOH . 
R 5 HOH E 2 1202 5 HOH HOH . 
S 5 HOH C 1 1201 8 HOH HOH . 
S 5 HOH C 2 1202 7 HOH HOH . 
T 5 HOH G 1 1201 9 HOH HOH . 
T 5 HOH G 2 1202 10 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . M 3 -48.613 3.265 -117.202 1 48.86 ? PG ATP 1101 C 1 
HETATM 2 O O1G ATP . . . M 3 -48.969 3.799 -118.575 1 44.49 ? O1G ATP 1101 C 1 
HETATM 3 O O2G ATP . . . M 3 -49.832 3.207 -116.294 1 59.46 ? O2G ATP 1101 C 1 
HETATM 4 O O3G ATP . . . M 3 -47.395 3.828 -116.478 1 47.26 ? O3G ATP 1101 C 1 
HETATM 5 P PB ATP . . . M 3 -48.712 0.532 -118.125 1 50.57 ? PB ATP 1101 C 1 
HETATM 6 O O1B ATP . . . M 3 -47.815 0.37 -119.291 1 58.35 ? O1B ATP 1101 C 1 
HETATM 7 O O2B ATP . . . M 3 -50.169 0.739 -118.405 1 57.97 ? O2B ATP 1101 C 1 
HETATM 8 O O3B ATP . . . M 3 -48.169 1.723 -117.238 1 47.74 ? O3B ATP 1101 C 1 
HETATM 9 P PA ATP . . . M 3 -49.649 -1.214 -116.078 1 45.64 ? PA ATP 1101 C 1 
HETATM 10 O O1A ATP . . . M 3 -49.099 -1.422 -114.699 1 40.01 ? O1A ATP 1101 C 1 
HETATM 11 O O2A ATP . . . M 3 -50.895 -0.449 -116.424 1 51.74 ? O2A ATP 1101 C 1 
HETATM 12 O O3A ATP . . . M 3 -48.484 -0.64 -117.051 1 46.28 ? O3A ATP 1101 C 1 
HETATM 13 O O5' ATP . . . M 3 -50.018 -2.659 -116.574 1 51.95 ? O5' ATP 1101 C 1 
HETATM 14 C C5' ATP . . . M 3 -51.145 -2.979 -117.389 1 52.32 ? C5' ATP 1101 C 1 
HETATM 15 C C4' ATP . . . M 3 -50.827 -3.918 -118.534 1 47.61 ? C4' ATP 1101 C 1 
HETATM 16 O O4' ATP . . . M 3 -52.056 -4.392 -119.062 1 47.39 ? O4' ATP 1101 C 1 
HETATM 17 C C3' ATP . . . M 3 -50.105 -3.209 -119.662 1 46.49 ? C3' ATP 1101 C 1 
HETATM 18 O O3' ATP . . . M 3 -48.859 -3.769 -120.01 1 44.79 ? O3' ATP 1101 C 1 
HETATM 19 C C2' ATP . . . M 3 -51.039 -3.329 -120.85 1 49.45 ? C2' ATP 1101 C 1 
HETATM 20 O O2' ATP . . . M 3 -50.332 -3.58 -122.082 1 50.49 ? O2' ATP 1101 C 1 
HETATM 21 C C1' ATP . . . M 3 -51.903 -4.514 -120.458 1 50.34 ? C1' ATP 1101 C 1 
HETATM 22 N N9 ATP . . . M 3 -53.111 -4.485 -121.234 1 54.45 ? N9 ATP 1101 C 1 
HETATM 23 C C8 ATP . . . M 3 -53.994 -3.541 -121.218 1 55.8 ? C8 ATP 1101 C 1 
HETATM 24 N N7 ATP . . . M 3 -54.972 -3.879 -122.061 1 56.31 ? N7 ATP 1101 C 1 
HETATM 25 C C5 ATP . . . M 3 -54.714 -5.04 -122.634 1 57.56 ? C5 ATP 1101 C 1 
HETATM 26 C C6 ATP . . . M 3 -55.351 -5.943 -123.606 1 63.34 ? C6 ATP 1101 C 1 
HETATM 27 N N6 ATP . . . M 3 -56.526 -5.646 -124.185 1 69.09 ? N6 ATP 1101 C 1 
HETATM 28 N N1 ATP . . . M 3 -54.745 -7.088 -123.918 1 61.72 ? N1 ATP 1101 C 1 
HETATM 29 C C2 ATP . . . M 3 -53.593 -7.412 -123.344 1 60.51 ? C2 ATP 1101 C 1 
HETATM 30 N N3 ATP . . . M 3 -52.969 -6.632 -122.445 1 58.94 ? N3 ATP 1101 C 1 
HETATM 31 C C4 ATP . . . M 3 -53.474 -5.451 -122.051 1 56.57 ? C4 ATP 1101 C 1 
HETATM 32 H "H5'1" ATP . . . M 3 -51.556 -2.053 -117.799 1 62.78 ? "H5'1" ATP 1101 C 1 
HETATM 33 H "H5'2" ATP . . . M 3 -51.912 -3.437 -116.762 1 62.78 ? "H5'2" ATP 1101 C 1 
HETATM 34 H H4' ATP . . . M 3 -50.19 -4.727 -118.149 1 57.13 ? H4' ATP 1101 C 1 
HETATM 35 H H3' ATP . . . M 3 -49.872 -2.181 -119.351 1 55.79 ? H3' ATP 1101 C 1 
HETATM 36 H H2' ATP . . . M 3 -51.602 -2.407 -121.051 1 59.34 ? H2' ATP 1101 C 1 
HETATM 37 H HO2' ATP . . . M 3 -49.653 -2.903 -122.208 1 60.59 ? HO2' ATP 1101 C 1 
HETATM 38 H H1' ATP . . . M 3 -51.466 -5.499 -120.678 1 60.41 ? H1' ATP 1101 C 1 
HETATM 39 H H8 ATP . . . M 3 -53.948 -2.636 -120.625 1 66.96 ? H8 ATP 1101 C 1 
HETATM 40 H HN61 ATP . . . M 3 -56.927 -6.286 -124.849 1 82.9 ? HN61 ATP 1101 C 1 
HETATM 41 H HN62 ATP . . . M 3 -56.998 -4.781 -123.959 1 82.9 ? HN62 ATP 1101 C 1 
HETATM 42 H H2 ATP . . . M 3 -53.133 -8.354 -123.614 1 72.61 ? H2 ATP 1101 C 1 
#
_model_server_stats.io_time_ms              146 
_model_server_stats.parse_time_ms           63 
_model_server_stats.create_model_time_ms    446 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           42 
#