data_6ZI2
#
_model_server_result.job_id            SK6YE6aQHag8AUuXsPmMRQ 
_model_server_result.datetime_utc      '2024-11-28 21:10:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zi2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":502}' 
#
_entry.id    6ZI2 
#
_exptl.entry_id    6ZI2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              372.496 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3~{R},4~{S},5~{R},6~{S},7~{S},9~{S},11~{R},12~{S},13~{R},14~{R})-3,5,7,9,11,13,14-heptamethyl-4,6,12-tris(oxidanyl)-1-oxacyclotetradecane-2,10-dione 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         104.43 
_cell.angle_beta          104.25 
_cell.angle_gamma         113.91 
_cell.entry_id            6ZI2 
_cell.length_a            112.066 
_cell.length_b            116.642 
_cell.length_c            125.17 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZI2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
? monomeric 1 author_defined_assembly 7 
? monomeric 1 author_defined_assembly 8 
? monomeric 1 author_defined_assembly 9 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,J,K,BA 1 1 
B,L,M,CA 2 1 
C,N,O,DA 3 1 
D,P,Q,EA 4 1 
E,R,S,FA 5 1 
F,T,U,GA 6 1 
G,V,W,HA 7 1 
H,X,Y,IA 8 1 
I,Z,AA,JA 9 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 K N N 
? 3 M N N 
? 3 O N N 
? 3 Q N N 
? 3 S N N 
? 3 U N N 
? 3 W N N 
? 3 Y N N 
? 3 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 I OG SER 240 I SER 240 1_555 AA C33 QR8 . I QR8 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.5 ? 
metalc ? metalc1 A SG CYS 356 A CYS 356 1_555 J FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc2 J FE HEM . A HEM 501 1_555 BA O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
metalc ? metalc3 B SG CYS 356 B CYS 356 1_555 L FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc4 C SG CYS 356 C CYS 356 1_555 N FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? 
metalc ? metalc5 P FE HEM . D HEM 501 1_555 EA O HOH . D HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc6 T FE HEM . F HEM 501 1_555 GA O HOH . F HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
metalc ? metalc7 X FE HEM . H HEM 501 1_555 IA O HOH . H HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? 
metalc ? metalc8 I SG CYS 356 I CYS 356 1_555 Z FE HEM . I HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
#
_chem_comp.formula           'C20 H36 O6' 
_chem_comp.formula_weight    372.496 
_chem_comp.id                QR8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3~{R},4~{S},5~{R},6~{S},7~{S},9~{S},11~{R},12~{S},13~{R},14~{R})-3,5,7,9,11,13,14-heptamethyl-4,6,12-tris(oxidanyl)-1-oxacyclotetradecane-2,10-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C31 C4 QR8 sing 359 n n 
C30 C2 QR8 sing 360 n n 
C4 C3 QR8 sing 361 n n 
C4 C5 QR8 sing 362 n n 
O3 C3 QR8 sing 363 n n 
O7 C5 QR8 sing 364 n n 
C2 C3 QR8 sing 365 n n 
C2 C1 QR8 sing 366 n n 
C5 C6 QR8 sing 367 n n 
O1 C1 QR8 doub 368 n n 
C1 O2 QR8 sing 369 n n 
C6 C7 QR8 sing 370 n n 
C6 C32 QR8 sing 371 n n 
C7 C8 QR8 sing 372 n n 
O2 C13 QR8 sing 373 n n 
C13 C36 QR8 sing 374 n n 
C13 C12 QR8 sing 375 n n 
C8 C9 QR8 sing 376 n n 
C8 C33 QR8 sing 377 n n 
C11 C12 QR8 sing 378 n n 
C11 O12 QR8 sing 379 n n 
C11 C10 QR8 sing 380 n n 
C12 C35 QR8 sing 381 n n 
C9 O11 QR8 doub 382 n n 
C9 C10 QR8 sing 383 n n 
C10 C34 QR8 sing 384 n n 
C10 H1 QR8 sing 385 n n 
C34 H2 QR8 sing 386 n n 
C34 H3 QR8 sing 387 n n 
C34 H4 QR8 sing 388 n n 
C11 H5 QR8 sing 389 n n 
O12 H6 QR8 sing 390 n n 
C12 H7 QR8 sing 391 n n 
C35 H8 QR8 sing 392 n n 
C35 H9 QR8 sing 393 n n 
C35 H10 QR8 sing 394 n n 
C13 H11 QR8 sing 395 n n 
C36 H12 QR8 sing 396 n n 
C36 H13 QR8 sing 397 n n 
C36 H14 QR8 sing 398 n n 
C8 H15 QR8 sing 399 n n 
C33 H16 QR8 sing 400 n n 
C33 H17 QR8 sing 401 n n 
C33 H18 QR8 sing 402 n n 
C7 H19 QR8 sing 403 n n 
C7 H20 QR8 sing 404 n n 
C6 H21 QR8 sing 405 n n 
C32 H22 QR8 sing 406 n n 
C32 H23 QR8 sing 407 n n 
C32 H24 QR8 sing 408 n n 
C5 H25 QR8 sing 409 n n 
O7 H26 QR8 sing 410 n n 
C4 H27 QR8 sing 411 n n 
C31 H28 QR8 sing 412 n n 
C31 H29 QR8 sing 413 n n 
C31 H30 QR8 sing 414 n n 
C3 H31 QR8 sing 415 n n 
O3 H32 QR8 sing 416 n n 
C2 H33 QR8 sing 417 n n 
C30 H34 QR8 sing 418 n n 
C30 H35 QR8 sing 419 n n 
C30 H36 QR8 sing 420 n n 
#
_atom_sites.entry_id                     6ZI2 
_atom_sites.fract_transf_matrix[1][1]    0.008923 
_atom_sites.fract_transf_matrix[1][2]    0.003957 
_atom_sites.fract_transf_matrix[1][3]    0.004161 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009378 
_atom_sites.fract_transf_matrix[2][3]    0.004018 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008967 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 2 HEM A 1 501 450 HEM HEM . 
K 3 QR8 A 1 502 451 QR8 QLK . 
L 2 HEM B 1 501 450 HEM HEM . 
M 3 QR8 B 1 502 451 QR8 QLK . 
N 2 HEM C 1 501 450 HEM HEM . 
O 3 QR8 C 1 502 451 QR8 QLK . 
P 2 HEM D 1 501 450 HEM HEM . 
Q 3 QR8 D 1 502 451 QR8 QLK . 
R 2 HEM E 1 501 450 HEM HEM . 
S 3 QR8 E 1 502 451 QR8 QLK . 
T 2 HEM F 1 501 450 HEM HEM . 
U 3 QR8 F 1 502 451 QR8 QLK . 
V 2 HEM G 1 501 450 HEM HEM . 
W 3 QR8 G 1 502 451 QR8 QLK . 
X 2 HEM H 1 501 450 HEM HEM . 
Y 3 QR8 H 1 502 451 QR8 QLK . 
Z 2 HEM I 1 501 450 HEM HEM . 
AA 3 QR8 I 1 502 451 QR8 QLK . 
BA 4 HOH A 1 601 79 HOH HOH . 
BA 4 HOH A 2 602 6 HOH HOH . 
BA 4 HOH A 3 603 9 HOH HOH . 
BA 4 HOH A 4 604 20 HOH HOH . 
BA 4 HOH A 5 605 3 HOH HOH . 
BA 4 HOH A 6 606 7 HOH HOH . 
BA 4 HOH A 7 607 2 HOH HOH . 
BA 4 HOH A 8 608 12 HOH HOH . 
BA 4 HOH A 9 609 8 HOH HOH . 
BA 4 HOH A 10 610 1 HOH HOH . 
BA 4 HOH A 11 611 69 HOH HOH . 
BA 4 HOH A 12 612 11 HOH HOH . 
BA 4 HOH A 13 613 5 HOH HOH . 
BA 4 HOH A 14 614 78 HOH HOH . 
BA 4 HOH A 15 615 4 HOH HOH . 
BA 4 HOH A 16 616 74 HOH HOH . 
BA 4 HOH A 17 617 70 HOH HOH . 
BA 4 HOH A 18 618 75 HOH HOH . 
BA 4 HOH A 19 619 77 HOH HOH . 
CA 4 HOH B 1 601 14 HOH HOH . 
CA 4 HOH B 2 602 15 HOH HOH . 
CA 4 HOH B 3 603 16 HOH HOH . 
CA 4 HOH B 4 604 13 HOH HOH . 
CA 4 HOH B 5 605 82 HOH HOH . 
CA 4 HOH B 6 606 80 HOH HOH . 
CA 4 HOH B 7 607 86 HOH HOH . 
DA 4 HOH C 1 601 33 HOH HOH . 
DA 4 HOH C 2 602 31 HOH HOH . 
DA 4 HOH C 3 603 24 HOH HOH . 
DA 4 HOH C 4 604 27 HOH HOH . 
DA 4 HOH C 5 605 71 HOH HOH . 
DA 4 HOH C 6 606 21 HOH HOH . 
DA 4 HOH C 7 607 32 HOH HOH . 
DA 4 HOH C 8 608 26 HOH HOH . 
DA 4 HOH C 9 609 30 HOH HOH . 
DA 4 HOH C 10 610 23 HOH HOH . 
DA 4 HOH C 11 611 29 HOH HOH . 
DA 4 HOH C 12 612 22 HOH HOH . 
DA 4 HOH C 13 613 10 HOH HOH . 
DA 4 HOH C 14 614 25 HOH HOH . 
EA 4 HOH D 1 601 73 HOH HOH . 
EA 4 HOH D 2 602 38 HOH HOH . 
EA 4 HOH D 3 603 48 HOH HOH . 
EA 4 HOH D 4 604 42 HOH HOH . 
EA 4 HOH D 5 605 34 HOH HOH . 
EA 4 HOH D 6 606 45 HOH HOH . 
EA 4 HOH D 7 607 46 HOH HOH . 
EA 4 HOH D 8 608 43 HOH HOH . 
EA 4 HOH D 9 609 39 HOH HOH . 
EA 4 HOH D 10 610 19 HOH HOH . 
EA 4 HOH D 11 611 36 HOH HOH . 
EA 4 HOH D 12 612 41 HOH HOH . 
EA 4 HOH D 13 613 17 HOH HOH . 
EA 4 HOH D 14 614 55 HOH HOH . 
EA 4 HOH D 15 615 93 HOH HOH . 
EA 4 HOH D 16 616 44 HOH HOH . 
EA 4 HOH D 17 617 18 HOH HOH . 
EA 4 HOH D 18 618 40 HOH HOH . 
EA 4 HOH D 19 619 47 HOH HOH . 
EA 4 HOH D 20 620 35 HOH HOH . 
EA 4 HOH D 21 621 98 HOH HOH . 
EA 4 HOH D 22 622 94 HOH HOH . 
EA 4 HOH D 23 623 95 HOH HOH . 
EA 4 HOH D 24 624 96 HOH HOH . 
EA 4 HOH D 25 625 97 HOH HOH . 
FA 4 HOH E 1 601 28 HOH HOH . 
FA 4 HOH E 2 602 50 HOH HOH . 
FA 4 HOH E 3 603 49 HOH HOH . 
FA 4 HOH E 4 604 51 HOH HOH . 
FA 4 HOH E 5 605 104 HOH HOH . 
FA 4 HOH E 6 606 52 HOH HOH . 
GA 4 HOH F 1 601 53 HOH HOH . 
GA 4 HOH F 2 602 57 HOH HOH . 
GA 4 HOH F 3 603 106 HOH HOH . 
GA 4 HOH F 4 604 56 HOH HOH . 
GA 4 HOH F 5 605 54 HOH HOH . 
GA 4 HOH F 6 606 76 HOH HOH . 
GA 4 HOH F 7 607 105 HOH HOH . 
HA 4 HOH G 1 601 61 HOH HOH . 
HA 4 HOH G 2 602 37 HOH HOH . 
HA 4 HOH G 3 603 62 HOH HOH . 
HA 4 HOH G 4 604 58 HOH HOH . 
HA 4 HOH G 5 605 63 HOH HOH . 
HA 4 HOH G 6 606 64 HOH HOH . 
HA 4 HOH G 7 607 59 HOH HOH . 
HA 4 HOH G 8 608 65 HOH HOH . 
HA 4 HOH G 9 609 92 HOH HOH . 
IA 4 HOH H 1 601 66 HOH HOH . 
IA 4 HOH H 2 602 60 HOH HOH . 
IA 4 HOH H 3 603 67 HOH HOH . 
IA 4 HOH H 4 604 72 HOH HOH . 
JA 4 HOH I 1 601 68 HOH HOH . 
JA 4 HOH I 2 602 84 HOH HOH . 
JA 4 HOH I 3 603 91 HOH HOH . 
JA 4 HOH I 4 604 81 HOH HOH . 
JA 4 HOH I 5 605 83 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O11 QR8 . . . O 3 -2.77 -51.061 4.097 1 20.67 ? O11 QR8 502 C 1 
HETATM 2 C C9 QR8 . . . O 3 -3.36 -50.63 5.016 1 18.57 ? C9 QR8 502 C 1 
HETATM 3 C C10 QR8 . . . O 3 -2.813 -50.701 6.397 1 18.53 ? C10 QR8 502 C 1 
HETATM 4 C C34 QR8 . . . O 3 -2 -49.467 6.663 1 18.58 ? C34 QR8 502 C 1 
HETATM 5 C C11 QR8 . . . O 3 -2.035 -51.961 6.678 1 18.22 ? C11 QR8 502 C 1 
HETATM 6 O O12 QR8 . . . O 3 -0.657 -51.737 6.689 1 18.51 ? O12 QR8 502 C 1 
HETATM 7 C C12 QR8 . . . O 3 -2.243 -52.439 8.088 1 17.29 ? C12 QR8 502 C 1 
HETATM 8 C C35 QR8 . . . O 3 -3.384 -51.773 8.798 1 16.86 ? C35 QR8 502 C 1 
HETATM 9 C C13 QR8 . . . O 3 -2.511 -53.892 8.074 1 17.57 ? C13 QR8 502 C 1 
HETATM 10 C C36 QR8 . . . O 3 -2.874 -54.272 9.469 1 16.51 ? C36 QR8 502 C 1 
HETATM 11 O O2 QR8 . . . O 3 -3.612 -53.992 7.218 1 19.41 ? O2 QR8 502 C 1 
HETATM 12 C C8 QR8 . . . O 3 -4.698 -50.036 4.799 1 18.48 ? C8 QR8 502 C 1 
HETATM 13 C C33 QR8 . . . O 3 -4.631 -48.553 4.624 1 18.31 ? C33 QR8 502 C 1 
HETATM 14 C C7 QR8 . . . O 3 -5.332 -50.678 3.594 1 18.96 ? C7 QR8 502 C 1 
HETATM 15 C C6 QR8 . . . O 3 -5.262 -52.153 3.794 1 17.31 ? C6 QR8 502 C 1 
HETATM 16 C C32 QR8 . . . O 3 -4.446 -52.68 2.659 1 17.17 ? C32 QR8 502 C 1 
HETATM 17 C C5 QR8 . . . O 3 -6.578 -52.884 3.841 1 17.44 ? C5 QR8 502 C 1 
HETATM 18 O O7 QR8 . . . O 3 -7.619 -51.997 3.62 1 17 ? O7 QR8 502 C 1 
HETATM 19 C C4 QR8 . . . O 3 -6.735 -53.531 5.184 1 17.64 ? C4 QR8 502 C 1 
HETATM 20 C C31 QR8 . . . O 3 -8.187 -53.642 5.586 1 18.24 ? C31 QR8 502 C 1 
HETATM 21 C C3 QR8 . . . O 3 -5.985 -54.868 5.246 1 17.62 ? C3 QR8 502 C 1 
HETATM 22 O O3 QR8 . . . O 3 -6.679 -55.864 4.52 1 17.4 ? O3 QR8 502 C 1 
HETATM 23 C C2 QR8 . . . O 3 -5.768 -55.268 6.695 1 18.62 ? C2 QR8 502 C 1 
HETATM 24 C C30 QR8 . . . O 3 -6.324 -56.623 7.004 1 18.83 ? C30 QR8 502 C 1 
HETATM 25 C C1 QR8 . . . O 3 -4.353 -55.199 7.183 1 19.79 ? C1 QR8 502 C 1 
HETATM 26 O O1 QR8 . . . O 3 -3.809 -56.134 7.636 1 21.85 ? O1 QR8 502 C 1 
#
_model_server_stats.io_time_ms              115 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    44 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           26 
#