data_6ZI4
#
_model_server_result.job_id            zJCTjoCbhQNcobCafny-rw 
_model_server_result.datetime_utc      '2024-10-24 04:20:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6zi4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":305}' 
#
_entry.id    6ZI4 
#
_exptl.entry_id    6ZI4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              229.402 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'LAURYL DIMETHYLAMINE-N-OXIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6ZI4 
_cell.length_a            226.4 
_cell.length_b            226.4 
_cell.length_c            113.7 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ZI4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    'P 4nw 2abw' 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 K N N 
? 8 P N N 
? 8 Q N N 
? 8 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 1 C CYS 1 1_555 I CG3 DGA . C DGA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.595 ? 
covale ? covale2 A SG CYS 87 C CYS 87 1_555 E CAB HEC . C HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.763 ? 
covale ? covale3 A SG CYS 90 C CYS 90 1_555 E CAC HEC . C HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? 
covale ? covale4 A SG CYS 132 C CYS 132 1_555 F CAB HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.784 ? 
covale ? covale5 A SG CYS 135 C CYS 135 1_555 F CAC HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? 
covale ? covale6 A SG CYS 244 C CYS 244 1_555 G CAB HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? 
covale ? covale7 A SG CYS 247 C CYS 247 1_555 G CAC HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? 
covale ? covale8 A SG CYS 305 C CYS 305 1_555 H CAB HEC . C HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.787 ? 
covale ? covale9 A SG CYS 308 C CYS 308 1_555 H CAC HEC . C HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.802 ? 
covale ? covale10 B C FME 1 H FME 1 1_555 B N TYR 2 H TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
metalc ? metalc1 A SD MET 74 C MET 74 1_555 E FE HEC . C HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc2 A NE2 HIS 91 C HIS 91 1_555 E FE HEC . C HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc3 A SD MET 110 C MET 110 1_555 F FE HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc4 A NE2 HIS 124 C HIS 124 1_555 H FE HEC . C HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc5 A NE2 HIS 136 C HIS 136 1_555 F FE HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? 
metalc ? metalc6 A SD MET 233 C MET 233 1_555 G FE HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc7 A NE2 HIS 248 C HIS 248 1_555 G FE HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc8 A NE2 HIS 309 C HIS 309 1_555 H FE HEC . C HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? 
metalc ? metalc9 C NE2 HIS 190 L HIS 190 1_555 Y FE FE . M FE 401 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.124 ? 
metalc ? metalc10 C NE2 HIS 190 L HIS 190 1_555 Y FE FE . M FE 401 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.979 ? 
metalc ? metalc11 C NE2 HIS 230 L HIS 230 1_555 Y FE FE . M FE 401 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc12 C NE2 HIS 230 L HIS 230 1_555 Y FE FE . M FE 401 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc13 D NE2 HIS 217 M HIS 217 1_555 Y FE FE . M FE 401 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc14 D NE2 HIS 217 M HIS 217 1_555 Y FE FE . M FE 401 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc15 D OE1 GLU 232 M GLU 232 1_555 Y FE FE . M FE 401 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc16 D OE1 GLU 232 M GLU 232 1_555 Y FE FE . M FE 401 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc17 D OE2 GLU 232 M GLU 232 1_555 Y FE FE . M FE 401 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc18 D OE2 GLU 232 M GLU 232 1_555 Y FE FE . M FE 401 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc19 D NE2 HIS 264 M HIS 264 1_555 Y FE FE . M FE 401 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc20 D NE2 HIS 264 M HIS 264 1_555 Y FE FE . M FE 401 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.195 ? 
#
_chem_comp.formula           'C14 H31 N O' 
_chem_comp.formula_weight    229.402 
_chem_comp.id                LDA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'LAURYL DIMETHYLAMINE-N-OXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 O1 LDA sing 712 n n 
N1 CM1 LDA sing 713 n n 
N1 CM2 LDA sing 714 n n 
N1 C1 LDA sing 715 n n 
CM1 HM11 LDA sing 716 n n 
CM1 HM12 LDA sing 717 n n 
CM1 HM13 LDA sing 718 n n 
CM2 HM21 LDA sing 719 n n 
CM2 HM22 LDA sing 720 n n 
CM2 HM23 LDA sing 721 n n 
C1 C2 LDA sing 722 n n 
C1 H11 LDA sing 723 n n 
C1 H12 LDA sing 724 n n 
C2 C3 LDA sing 725 n n 
C2 H21 LDA sing 726 n n 
C2 H22 LDA sing 727 n n 
C3 C4 LDA sing 728 n n 
C3 H31 LDA sing 729 n n 
C3 H32 LDA sing 730 n n 
C4 C5 LDA sing 731 n n 
C4 H41 LDA sing 732 n n 
C4 H42 LDA sing 733 n n 
C5 C6 LDA sing 734 n n 
C5 H51 LDA sing 735 n n 
C5 H52 LDA sing 736 n n 
C6 C7 LDA sing 737 n n 
C6 H61 LDA sing 738 n n 
C6 H62 LDA sing 739 n n 
C7 C8 LDA sing 740 n n 
C7 H71 LDA sing 741 n n 
C7 H72 LDA sing 742 n n 
C8 C9 LDA sing 743 n n 
C8 H81 LDA sing 744 n n 
C8 H82 LDA sing 745 n n 
C9 C10 LDA sing 746 n n 
C9 H91 LDA sing 747 n n 
C9 H92 LDA sing 748 n n 
C10 C11 LDA sing 749 n n 
C10 H101 LDA sing 750 n n 
C10 H102 LDA sing 751 n n 
C11 C12 LDA sing 752 n n 
C11 H111 LDA sing 753 n n 
C11 H112 LDA sing 754 n n 
C12 H121 LDA sing 755 n n 
C12 H122 LDA sing 756 n n 
C12 H123 LDA sing 757 n n 
#
_atom_sites.entry_id                     6ZI4 
_atom_sites.fract_transf_matrix[1][1]    0.004417 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004417 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008795 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 HEC C 1 401 401 HEC HEC . 
F 5 HEC C 1 402 402 HEC HEC . 
G 5 HEC C 1 403 403 HEC HEC . 
H 5 HEC C 1 404 404 HEC HEC . 
I 6 DGA C 1 405 1278 DGA DGA . 
J 7 SO4 C 1 406 7 SO4 SO4 . 
K 8 LDA H 1 701 701 LDA LDA . 
L 7 SO4 H 1 702 1 SO4 SO4 . 
M 7 SO4 H 1 703 10 SO4 SO4 . 
N 7 SO4 H 1 704 18 SO4 SO4 . 
O 7 SO4 H 1 705 21 SO4 SO4 . 
P 8 LDA H 1 706 1 LDA LDA . 
Q 8 LDA H 1 707 2 LDA LDA . 
R 9 HTO H 1 708 3 HTO HTO . 
S 10 BCB L 1 301 400 BCB BCB . 
T 10 BCB L 1 302 401 BCB BCB . 
U 11 BPB L 1 303 402 BPB BPB . 
V 10 BCB L 1 304 400 BCB BCB . 
W 8 LDA L 1 305 7 LDA LDA . 
X 9 HTO L 1 306 1 HTO HTO . 
Y 12 FE M 1 401 500 FE FE . 
Z 13 MQ7 M 1 402 501 MQ7 MQ7 . 
AA 10 BCB M 1 403 401 BCB BCB . 
BA 11 BPB M 1 404 402 BPB BPB . 
CA 14 NS5 M 1 405 600 NS5 NS5 . 
DA 7 SO4 M 1 406 3 SO4 SO4 . 
EA 7 SO4 M 1 407 5 SO4 SO4 . 
FA 7 SO4 M 1 408 6 SO4 SO4 . 
GA 7 SO4 M 1 409 9 SO4 SO4 . 
HA 7 SO4 M 1 410 15 SO4 SO4 . 
IA 7 SO4 M 1 411 19 SO4 SO4 . 
JA 7 SO4 M 1 412 20 SO4 SO4 . 
KA 15 HOH C 1 501 132 HOH HOH . 
KA 15 HOH C 2 502 67 HOH HOH . 
KA 15 HOH C 3 503 146 HOH HOH . 
LA 15 HOH H 1 801 140 HOH HOH . 
LA 15 HOH H 2 802 99 HOH HOH . 
MA 15 HOH L 1 401 52 HOH HOH . 
MA 15 HOH L 2 402 41 HOH HOH . 
MA 15 HOH L 3 403 111 HOH HOH . 
MA 15 HOH L 4 404 63 HOH HOH . 
NA 15 HOH M 1 501 42 HOH HOH . 
NA 15 HOH M 2 502 30 HOH HOH . 
NA 15 HOH M 3 503 110 HOH HOH . 
NA 15 HOH M 4 504 124 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 LDA . . . W 8 10.863 -28.191 22.757 1 141.43 ? N1 LDA 305 L 1 
HETATM 2 O O1 LDA . . . W 8 10.306 -27.205 21.923 1 127.83 ? O1 LDA 305 L 1 
HETATM 3 C CM1 LDA . . . W 8 11.117 -27.649 24.087 1 145.57 ? CM1 LDA 305 L 1 
HETATM 4 C CM2 LDA . . . W 8 12.113 -28.612 22.164 1 139.63 ? CM2 LDA 305 L 1 
HETATM 5 C C1 LDA . . . W 8 9.952 -29.326 22.856 1 125.24 ? C1 LDA 305 L 1 
HETATM 6 C C2 LDA . . . W 8 10.635 -30.563 23.445 1 107.74 ? C2 LDA 305 L 1 
HETATM 7 C C3 LDA . . . W 8 9.606 -31.687 23.506 1 96.13 ? C3 LDA 305 L 1 
HETATM 8 C C4 LDA . . . W 8 10.074 -32.856 22.637 1 94.07 ? C4 LDA 305 L 1 
HETATM 9 C C5 LDA . . . W 8 10.39 -34.017 23.585 1 98.83 ? C5 LDA 305 L 1 
HETATM 10 C C6 LDA . . . W 8 10.21 -35.404 22.965 1 97.9 ? C6 LDA 305 L 1 
HETATM 11 C C7 LDA . . . W 8 9.66 -36.318 24.062 1 110.42 ? C7 LDA 305 L 1 
HETATM 12 C C8 LDA . . . W 8 10.346 -37.686 24.085 1 118.54 ? C8 LDA 305 L 1 
HETATM 13 C C9 LDA . . . W 8 9.677 -38.594 25.128 1 117.38 ? C9 LDA 305 L 1 
HETATM 14 C C10 LDA . . . W 8 10.091 -38.209 26.553 1 120.03 ? C10 LDA 305 L 1 
HETATM 15 C C11 LDA . . . W 8 9.928 -39.403 27.498 1 116.97 ? C11 LDA 305 L 1 
HETATM 16 C C12 LDA . . . W 8 10.543 -39.088 28.865 1 110.71 ? C12 LDA 305 L 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           16 
#